mRNA_P-littoralis_Contig739.4.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig739.4.1 vs. uniprot
Match: A0A6H5KF31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF31_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 8.680e-8 Identity = 125/416 (30.05%), Postives = 173/416 (41.59%), Query Frame = 1
Query: 1594 WQGAEESLRWTQPWGRTA--TTAPGTSTAGAVTPHPGHQA--------RRRGAHSSVGCNT-----PAFGGSSAASISRSSPCDPKTSNEMAAGAEEVDIPSSSLSPARPQQELDSYNPFHEEDLVSIAVVSSGINIPKNVS--------SPPPS----VQNTGSTRPGFVVQQQLAAGAAGGLPFA--SSSQPSIKSRTSGRQTSRSPSFFSSSTPMPSSASSPGATGTXXXXSRSSHETTTR---AEAEQGATSGGRENCDGRGGASATTPLLARGQGDVVSLSPWPKPPSSPASSVRSHPQRPSVSRAIGAASGNGQRHRDEQQSTPKAPSVQLLAPPSLDTSPSRTSHSGPPEDNPIHAGVRGTPVLENGTRAASRPPPVFSPSRAGDEDEE-EDSFGGPGLTVEAYMAKRH 2742
WQGA+ESLRWTQPWG A TA + V P H +R H G P+ GG+S++ S + P + + S + AE VD+PSSSL P E DS+NPF + DLV I S G P NVS SPP + + + R G V+ A ++G P A +++ P++ S +S +S+ P ++ + GA S S TR A QG GR G G A + ++ Q S + PS+ R A+S G E ++ +L S+ T+ S + I + R TP E+G R P DE E+ EDS GGPGLTVEAYMA++H
Sbjct: 284 WQGADESLRWTQPWGGEAGPATAAAAGASSRVRRSPRHDPETPRGVLEQRNSCHGGSGGEREERFPPSTGGASSSFASSAVPYNNRNSQRVVDDAE-VDMPSSSL----PLCEADSFNPFQDADLVPITTGSIGAKAPGNVSTSRRQGSRSPPAPNTFPAEQSATMRSGLAVRP-AARDSSGKSPIADATAAAPTVSSSSS-----------TSTRPTSTAGTRGGAVAGEPSFSGSHTRMITRKAKAGLRQGDGGAGRTQASGAGDAPVGHMVQSQ-QXXXXXXXXXXXXXXXXXXSGNPFSRGPSMDRGDPASSVGGVHTAAESKAN-----CELSHDVSVRTNRRNVSGLDQAQAGLIRSDGR-TPHEESGKRK----PTSADVGVIEDEIEDYEDSLGGPGLTVEAYMAEKH 671
BLAST of mRNA_P-littoralis_Contig739.4.1 vs. uniprot
Match: D8LHD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD9_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 6.870e-7 Identity = 58/149 (38.93%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 1582 GDESWQGAEESLRWTQPWGRTATTAPGTSTA-GA---VTPHP--------GHQARRRGAHSSVGCN-----TPAFGGSSAASISRSSPCDPKTSNEMAAGAEEVDIPSSSLSPARPQQELDSYNPFHEEDLVSIAVVSSGINIPKNVSS 1977
G+ SWQGA+ESLRWTQPWG T P T+ A GA V P G +R H G + + GG+S++ S + P + + S +A AE VD+PSSSL P E DS+NPF + DL I S G P N ++
Sbjct: 63 GESSWQGADESLRWTQPWG--GETGPATAAAVGAPSRVRQSPRNDPEIPRGVLEQRNSCHDGSGGERVEPFSSSAGGASSSFKSSAVPHNNRNSQRVADDAE-VDMPSSSL----PLCEADSFNPFQDADLAPITTGSIGAKAPGNATN 204 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig739.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig739.4.1 >prot_P-littoralis_Contig739.4.1 ID=prot_P-littoralis_Contig739.4.1|Name=mRNA_P-littoralis_Contig739.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1004bp MDRTTRTSSSGRRRNVVKPGRIDTILGHDRQGLRLNFGLAMHQQRSYTVAback to top mRNA from alignment at P-littoralis_Contig739:46936..57843+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig739.4.1 ID=mRNA_P-littoralis_Contig739.4.1|Name=mRNA_P-littoralis_Contig739.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10908bp|location=Sequence derived from alignment at P-littoralis_Contig739:46936..57843+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig739:46936..57843+ >mRNA_P-littoralis_Contig739.4.1 ID=mRNA_P-littoralis_Contig739.4.1|Name=mRNA_P-littoralis_Contig739.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=3012bp|location=Sequence derived from alignment at P-littoralis_Contig739:46936..57843+ (Pylaiella littoralis U1_48)back to top |