mRNA_P-littoralis_Contig738.27.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig738.27.2
Unique NamemRNA_P-littoralis_Contig738.27.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: D7G827_ECTSI (40S ribosomal protein S6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G827_ECTSI)

HSP 1 Score: 434 bits (1115), Expect = 4.100e-147
Identity = 232/242 (95.87%), Postives = 236/242 (97.52%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKFEKNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKVTA 782
            MKLNIASP TGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLS NRVRLL+HKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKG+QDIPGLTDAPVPRRLGPKRANNIRKLFNL KDDDVRKYVIARKFEK GKTVTKRP+IQRLITPIRLQRKRARAAAKK+ QAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKV A
Sbjct:    1 MKLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKVVA 242
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: A0A836CDZ2_9STRA (40S ribosomal protein S6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ2_9STRA)

HSP 1 Score: 363 bits (933), Expect = 1.240e-119
Identity = 193/240 (80.42%), Postives = 213/240 (88.75%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKFEKNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKV 776
            MKLNIA P+TG+Q FIE DDEKKLRALYDKRISQEVEGEALG+EF+GY+FRISGGNDKQGFPMKQGVL  +RVRLL+ KG+SCYR RR+GERKRKSVRGCIV +DLAVLNLV+ KKG+ ++PGLTD  VPRRLGPKRAN IRKLFNLSK+DDVRKYVIARKFEK GKTVTKRP IQRLITP +LQR R RA+ KK  Q KS+ DA+EY  LYAQR KE KEARRS+ISKRRSSRKASAKV
Sbjct:    1 MKLNIAFPTTGAQKFIECDDEKKLRALYDKRISQEVEGEALGEEFSGYVFRISGGNDKQGFPMKQGVLCNHRVRLLLSKGLSCYRPRRKGERKRKSVRGCIVGSDLAVLNLVIVKKGEGEVPGLTDVTVPRRLGPKRANKIRKLFNLSKEDDVRKYVIARKFEKKGKTVTKRPKIQRLITPAKLQRTRRRASLKKQAQVKSKADAAEYGRLYAQRMKEAKEARRSIISKRRSSRKASAKV 240
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: F0YLS6_AURAN (40S ribosomal protein S6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLS6_AURAN)

HSP 1 Score: 324 bits (831), Expect = 2.720e-104
Identity = 178/242 (73.55%), Postives = 199/242 (82.23%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKFE-KNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKVT 779
            MKLNIA PSTG+Q F+EIDDEKKLRALYD+RISQEV+GEALG+EFAGY+FRI+GGNDKQGFPMKQGVL  +RVRLL+  G SCYRQRR GERKRKSVRGCIV ADLAVLNLVV K+GD DI GLTD PV  RLGPKRAN IRKLF L+KDDDVRKYVIARKFE K GK+VTK P IQRLITP+ LQRKR R   K     K++ +A EY  +   R +EQK+ARRS ISKRRSSRK+  + T
Sbjct:    1 MKLNIACPSTGAQKFLEIDDEKKLRALYDRRISQEVDGEALGEEFAGYVFRITGGNDKQGFPMKQGVLCNHRVRLLLRAGASCYRQRRAGERKRKSVRGCIVGADLAVLNLVVVKQGDADIEGLTDTPVAVRLGPKRANKIRKLFALTKDDDVRKYVIARKFENKKGKSVTKAPKIQRLITPLCLQRKRDRKRVKMAAITKAKAEAVEYNRVKTMRMQEQKDARRSAISKRRSSRKSKTQAT 242
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: A0A7S2RIP4_9STRA (40S ribosomal protein S6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIP4_9STRA)

HSP 1 Score: 323 bits (827), Expect = 1.010e-103
Identity = 175/240 (72.92%), Postives = 201/240 (83.75%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKFE-KNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAK 773
            M  NI++P TG Q  I IDDE+KLRA+YD RI+QE++G ALG+EFAGY+FRISGGNDKQGFPMKQGVLS  RVRLL+HKG SCYRQR+ GERKRKSVRGCIV +DLAVLNLVVTKKGD +I GLTDA VPRRLGPKRA+ IR+LFNL K+DDVRK V+ R FE K GKTVTK P IQRL+TP+ LQRKRAR AAK     K++ +A+EY+ L AQR +EQKEARRS ISKRRSSRK+S K
Sbjct:    1 MMFNISNPMTGCQKCITIDDERKLRAVYDLRIAQELDGSALGEEFAGYVFRISGGNDKQGFPMKQGVLSNTRVRLLLHKGASCYRQRKTGERKRKSVRGCIVGSDLAVLNLVVTKKGDAEIEGLTDASVPRRLGPKRASKIRQLFNLDKEDDVRKVVVRRSFENKAGKTVTKSPKIQRLVTPLTLQRKRARKAAKVAAVEKARTEAAEYSKLRAQRAREQKEARRSAISKRRSSRKSSKK 240
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: W7TEA2_9STRA (40S ribosomal protein S6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEA2_9STRA)

HSP 1 Score: 318 bits (816), Expect = 4.490e-102
Identity = 169/241 (70.12%), Postives = 200/241 (82.99%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKFE-KNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKV 776
            MKLNIA+P TG Q  +EIDDEK+LRA YD+RISQEV+GE +GDEF GY+F+ISGGNDKQGFPMKQGVL+  RVRLL+ KG+SCYR RR+GERKRKSVRG IV  DL+VLNLV+ K+G++D+ GLTD+ VPRRLGPKRANNIRKLFNLSKD DV  Y + RKFE K GKTV K+P IQRLITP+RLQ KR R  AKK    K++ +A+EY  ++ QR  E+KE+RRS ISKRRSSR+ASAKV
Sbjct:    1 MKLNIANPQTGQQHVVEIDDEKRLRAFYDRRISQEVDGEHIGDEFKGYVFKISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLVLVKRGEEDVVGLTDSAVPRRLGPKRANNIRKLFNLSKDADVTTYPVERKFENKKGKTVVKKPKIQRLITPLRLQHKRRRLEAKKAATTKAKAEAAEYHRIFQQRLNERKESRRSAISKRRSSRRASAKV 241
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: A0A7S0LPA9_9EUKA (40S ribosomal protein S6 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPA9_9EUKA)

HSP 1 Score: 318 bits (814), Expect = 8.660e-102
Identity = 169/239 (70.71%), Postives = 196/239 (82.01%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKFEKNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAK 773
            MK+NIA P+TG+Q FI+IDDEKKLR LYDKRISQEV GE LGDEFAGY+FRISGGNDKQGFPMKQGVL+  RVRLL+ +GVSCYR RR GERKRKSVRGCIV +DLAVLNLV+ KKGD +I G TD  +P+RLGPKRA+ IR LFNL+K DDVRKYVIAR FEK GKT+TKRP IQRL+TP+ ++RK+ R    K     S+ +A+ Y +L  +R  EQKEARRS ISKRRSSR+AS K
Sbjct:    1 MKINIAYPATGNQKFIDIDDEKKLRTLYDKRISQEVNGEDLGDEFAGYIFRISGGNDKQGFPMKQGVLTNTRVRLLLKEGVSCYRARRVGERKRKSVRGCIVGSDLAVLNLVIIKKGDNEIEGFTDVSIPKRLGPKRASKIRNLFNLTKADDVRKYVIARTFEKKGKTITKRPKIQRLVTPVTIRRKKQREVKAKKALENSKAEAAAYTALVHKRIAEQKEARRSEISKRRSSRRASTK 239
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: A0A6A3NLQ1_9STRA (40S ribosomal protein S6 n=8 Tax=Sar TaxID=2698737 RepID=A0A6A3NLQ1_9STRA)

HSP 1 Score: 307 bits (786), Expect = 3.750e-97
Identity = 166/246 (67.48%), Postives = 195/246 (79.27%), Query Frame = 3 
Query:   36 CLRGLARMKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKFE-KNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASA 770
            CL   + MKLNIA+P TG+Q  +E+DDE KLRA YDKRISQE+EG+ LGDEF G++FR+SGGNDKQGFPMKQGVLS  R RLL+ KG +CYR RR+GERKRKSVRGCIV  DL+VLNLVV K G+ D+PGLTD  +PRRLGPKRA+NIRKLFNL+K+DDVRKYVI RKF+ K GK   K P IQRL+TP  L  KR  A  K   + K QR+A+EY  L+AQR KEQK+ R S I+KRRSSRKAS+
Sbjct:   23 CLVRFSTMKLNIANPLTGAQKVLEVDDEHKLRAFYDKRISQEIEGDVLGDEFKGFVFRVSGGNDKQGFPMKQGVLSNGRARLLLSKGKTCYRPRRKGERKRKSVRGCIVGPDLSVLNLVVVKAGEADVPGLTDVQIPRRLGPKRASNIRKLFNLTKEDDVRKYVIRRKFDSKTGKKNDKAPKIQRLVTPRTLHHKRQIALKKVQQREKVQREAAEYNRLHAQRVKEQKDRRASEIAKRRSSRKASS 268
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: A0A7S3ZJK9_9STRA (40S ribosomal protein S6 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJK9_9STRA)

HSP 1 Score: 305 bits (781), Expect = 8.090e-97
Identity = 168/243 (69.14%), Postives = 192/243 (79.01%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKF-EKNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKVTA 782
            MKLNIA PSTG+Q ++E+DDEKKLRALYD RI  EVEGEALG+EF GY+FRISGGNDKQGFPMKQGVL  +RV+LL+  G SCYRQRR GERKRKSVRGC+V  DLAVLNLVV K+GD +I GLTD  VP RLGPKRAN IRKLF LSK+DDVRKYVI RKF +KNGK VTK P IQRLITPI LQRKR     K    AK ++DA EY  +  Q  +  + +RRS +SKRRSSR++ A+ TA
Sbjct:    1 MKLNIACPSTGAQKWVEVDDEKKLRALYDNRIGAEVEGEALGEEFNGYVFRISGGNDKQGFPMKQGVLCNHRVKLLLRAGASCYRQRRSGERKRKSVRGCVVGPDLAVLNLVVVKQGDAEIEGLTDTQVPVRLGPKRANKIRKLFALSKEDDVRKYVIRRKFTKKNGKEVTKAPKIQRLITPIMLQRKRDMKRKKMAQVAKVKKDAEEYHRVQTQHIQAARASRRSAVSKRRSSRRSKAEATA 243
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: A0A7S2WN65_9STRA (40S ribosomal protein S6 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WN65_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.320e-95
Identity = 162/242 (66.94%), Postives = 194/242 (80.17%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKF-EKNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKVT 779
            MK+N+A PSTG Q  +EIDDEK+L+ALY++R++QEV+G  LGDEFAGY+FRISGGNDKQGFPM+QG+L+  RVRLL  KG  CYR R  GERKRKSVRGCIV  D+AVLNLVVTK GD+ + GLTD   PRRLGPKRANNIRKLFNL+KDDDVR+YVIAR F  K G TV K P IQRL+TP+ LQRKRAR A+K     ++Q +A+ Y+ L  QR  EQK+ARRS+ISKRRS+RK++   T
Sbjct:    1 MKINLACPSTGLQKIVEIDDEKRLQALYERRMAQEVDGSLLGDEFAGYVFRISGGNDKQGFPMRQGILTNTRVRLLCKKGDKCYRPRVTGERKRKSVRGCIVGHDIAVLNLVVTKIGDEKVAGLTDDSAPRRLGPKRANNIRKLFNLTKDDDVRQYVIARTFTNKKGHTVRKAPRIQRLVTPLTLQRKRARKASKMKSILRNQEEAAAYSKLVTQRAAEQKDARRSLISKRRSTRKSAKLAT 242
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BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Match: M4B486_HYAAE (40S ribosomal protein S6 n=23 Tax=Oomycota TaxID=4762 RepID=M4B486_HYAAE)

HSP 1 Score: 300 bits (769), Expect = 4.870e-95
Identity = 162/239 (67.78%), Postives = 190/239 (79.50%), Query Frame = 3 
Query:   57 MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKDDDVRKYVIARKFE-KNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASA 770
            MKLNIA+P TG+Q  +E+DDE KLRA YDKRISQE++G  LG+EF G++FR+SGGNDKQGFPMKQGVLS  R RLL+ KG SCYR RR+GERKRKSVRGCIV  DL+VLNLVV K G+ D+PGLTD  +PRRLGPKRA+NIRKLFNL+K+DDVRKYVI RKFE K GK   K P IQRL+TP  L  KR  A  K   + K QR+A+EY  L+AQR KEQK+ R S ++KRRSSRK S+
Sbjct:    1 MKLNIANPLTGAQKVLEVDDEHKLRAFYDKRISQEIDGAVLGEEFKGFIFRVSGGNDKQGFPMKQGVLSNGRARLLLSKGKSCYRPRRKGERKRKSVRGCIVGPDLSVLNLVVVKAGEADVPGLTDVQIPRRLGPKRASNIRKLFNLTKEDDVRKYVIRRKFESKTGKKNDKAPKIQRLVTPRTLHHKRQIALKKVQQREKVQREAAEYNRLHAQRVKEQKDRRASEVAKRRSSRKVSS 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig738.27.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G827_ECTSI4.100e-14795.8740S ribosomal protein S6 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CDZ2_9STRA1.240e-11980.4240S ribosomal protein S6 n=1 Tax=Tribonema minus T... [more]
F0YLS6_AURAN2.720e-10473.5540S ribosomal protein S6 n=1 Tax=Aureococcus anoph... [more]
A0A7S2RIP4_9STRA1.010e-10372.9240S ribosomal protein S6 n=1 Tax=Rhizochromulina m... [more]
W7TEA2_9STRA4.490e-10270.1240S ribosomal protein S6 n=2 Tax=Monodopsidaceae T... [more]
A0A7S0LPA9_9EUKA8.660e-10270.7140S ribosomal protein S6 n=1 Tax=Coccolithus braar... [more]
A0A6A3NLQ1_9STRA3.750e-9767.4840S ribosomal protein S6 n=8 Tax=Sar TaxID=2698737... [more]
A0A7S3ZJK9_9STRA8.090e-9769.1440S ribosomal protein S6 n=1 Tax=Pelagomonas calce... [more]
A0A7S2WN65_9STRA1.320e-9566.9440S ribosomal protein S6 n=1 Tax=Eucampia antarcti... [more]
M4B486_HYAAE4.870e-9567.7840S ribosomal protein S6 n=23 Tax=Oomycota TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig738contigP-littoralis_Contig738:127679..133252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G827
Preferred nameRPS6
PFAMsRibosomal_S6e
Model size1843
Max annot lvl2759|Eukaryota
KEGG koko:K02991,ko:K07611,ko:K13022,ko:K14498,ko:K17284
KEGG Pathwayko01521,ko03010,ko03320,ko04016,ko04066,ko04075,ko04150,ko04151,ko04210,ko04214,ko04371,ko04714,ko04910,ko05205,map01521,map03010,map03320,map04016,map04066,map04075,map04150,map04151,map04210,map04214,map04371,map04714,map04910,map05205
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000028,GO:0000075,GO:0000082,GO:0000184,GO:0000278,GO:0000281,GO:0000462,GO:0000910,GO:0000956,GO:0001775,GO:0001776,GO:0001890,GO:0002181,GO:0002252,GO:0002260,GO:0002262,GO:0002263,GO:0002285,GO:0002286,GO:0002309,GO:0002366,GO:0002376,GO:0002520,GO:0002521,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0005938,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006924,GO:0006955,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007369,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022605,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030098,GO:0030099,GO:0030154,GO:0030217,GO:0030218,GO:0030425,GO:0030490,GO:0030587,GO:0030684,GO:0030686,GO:0031929,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032943,GO:0032991,GO:0033036,GO:0033077,GO:0033365,GO:0033500,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0035690,GO:0035770,GO:0036464,GO:0036477,GO:0042098,GO:0042110,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042592,GO:0042593,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043029,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0045047,GO:0045184,GO:0045321,GO:0045471,GO:0045786,GO:0045930,GO:0046483,GO:0046649,GO:0046651,GO:0046677,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048598,GO:0048608,GO:0048609,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060255,GO:0060548,GO:0061458,GO:0061515,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070227,GO:0070231,GO:0070661,GO:0070727,GO:0070887,GO:0070925,GO:0070938,GO:0070972,GO:0071236,GO:0071310,GO:0071361,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071887,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090702,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0099120,GO:0099568,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1901888,GO:1901889,GO:1903047,GO:1903347,GO:1990904,GO:2000810
Exons6
Evalue5.71e-153
EggNOG OGsCOG2125@1|root,KOG1646@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S6e
Ec32 orthologEc-00_010570.1
EC2.7.11.1
Descriptionstructural constituent of ribosome
Cds size729
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko01002,ko03011,ko04147,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig738.27.2prot_P-littoralis_Contig738.27.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig738 128737..133196 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791525.2168293-UTR-P-littoralis_Contig738:127678..1287361680791525.2168293-UTR-P-littoralis_Contig738:127678..128736Pylaiella littoralis U1_48UTRP-littoralis_Contig738 127679..128736 -
1680791525.300587-UTR-P-littoralis_Contig738:133196..1332521680791525.300587-UTR-P-littoralis_Contig738:133196..133252Pylaiella littoralis U1_48UTRP-littoralis_Contig738 133197..133252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791525.229519-CDS-P-littoralis_Contig738:128736..1288361680791525.229519-CDS-P-littoralis_Contig738:128736..128836Pylaiella littoralis U1_48CDSP-littoralis_Contig738 128737..128836 -
1680791525.2390704-CDS-P-littoralis_Contig738:129662..1298441680791525.2390704-CDS-P-littoralis_Contig738:129662..129844Pylaiella littoralis U1_48CDSP-littoralis_Contig738 129663..129844 -
1680791525.2560835-CDS-P-littoralis_Contig738:130136..1304391680791525.2560835-CDS-P-littoralis_Contig738:130136..130439Pylaiella littoralis U1_48CDSP-littoralis_Contig738 130137..130439 -
1680791525.268188-CDS-P-littoralis_Contig738:132083..1321561680791525.268188-CDS-P-littoralis_Contig738:132083..132156Pylaiella littoralis U1_48CDSP-littoralis_Contig738 132084..132156 -
1680791525.2789562-CDS-P-littoralis_Contig738:132731..1327961680791525.2789562-CDS-P-littoralis_Contig738:132731..132796Pylaiella littoralis U1_48CDSP-littoralis_Contig738 132732..132796 -
1680791525.2887335-CDS-P-littoralis_Contig738:133190..1331961680791525.2887335-CDS-P-littoralis_Contig738:133190..133196Pylaiella littoralis U1_48CDSP-littoralis_Contig738 133191..133196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig738.27.2

>prot_P-littoralis_Contig738.27.2 ID=prot_P-littoralis_Contig738.27.2|Name=mRNA_P-littoralis_Contig738.27.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=243bp
MKLNIASPSTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMF
RISGGNDKQGFPMKQGVLSTNRVRLLMHKGVSCYRQRRRGERKRKSVRGC
IVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLSKD
DDVRKYVIARKFEKNGKTVTKRPNIQRLITPIRLQRKRARAAAKKVCQAK
SQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKVTA*
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mRNA from alignment at P-littoralis_Contig738:127679..133252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig738.27.2 ID=mRNA_P-littoralis_Contig738.27.2|Name=mRNA_P-littoralis_Contig738.27.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5574bp|location=Sequence derived from alignment at P-littoralis_Contig738:127679..133252- (Pylaiella littoralis U1_48)
ACATCCTAAAGCCCGTAGACCCCTGCAGGCTCAAGTGCCTGAGAGGTCTA
GCAAGAATGAAGGTGCGTGCGCTCCTGTTGTAGACGCCAAAGGTCTGTTC
CGTGATTCTTGCAAGATGCATGGTTATGGAAAGGACAGGTTTGGTTTGCT
GGCGTTTGGGAGAAGAGAGCGCAGTGCTTGGCGAGGAAGCGAGAGGGAGA
GGGACAGAGGGACAGAGGCACGCACGGGGTGCGGAAGGATGGCAAGGCTT
GGAAGAGTGTTTGTACTGAATTACGTGGTGGATACGTTTGGTGACAAGCG
ATCGGCGGCCTCCCTTTTCCACTTTTTCACATCACCCCCTCTCTGTATCG
ATCTGCTTTGCGTTCCCCATTGCTGGCTGCTCGTTGGCTGCTGGATTTGG
TCCCCGTGTGGCTACACTCTCGCTGCCGGTGGCTGTGTGTTTGGCGGTGG
CAACAGCTTAACATTGCTTCGCCCTCCACGGGCTCCCAGATGTTCATCGA
GATCGATGACGAGAAGAAGCTGTGAGTGTACTCCGCTTTGTCTACCCGTT
GTTACTGCTTTCTCGTTCAGCAGTTTTGTCTATCTGTTTGGCAGAACTCT
ACTGTTGAATACGGTTAACTTCGTACGTAGAATACCGTAATACTCTCGAG
ACAGAGAGCAGTATTAGTAAATGCAGTACTGTACTGCTGTCGTGTCGAGA
ATTATCCCCCCCGGTGTATCACTTGCACACCAACAGCAGCAGTAGATGCG
GCACATCCGTCACATGAGCTACACATCTGCTAATCAATGCAACGCATGGC
TCTCTCTCACTTCGTGTCTCAGACTCGGGTCGGACATGGAATAATCTTCG
GAAGACAATGATTTCTTGCATTCCAACTATGTGCCGTATGGTACAAGTAT
TCATTGTCAAATTTGACACTACTTTTCGCACTCGACACACCAGCTACCTC
TGAACTATCGCTGGCACTTCCTTGGATTACTCCTTCTTACCTTGTATCTC
TTTTCGACGTGTCCACGTGATGTCACTCCTTCTCCTCATTACTCCCCCCT
GTCGGTCTGGCACCGCATTATTGCTCTTGCATGGTGAAATCATCAGCCGT
GCCTTGTACGACAAGCGCATCTCTCAGGAGGTGGAGGGAGAGGCTCTTGG
AGACGAGTTCGCTGGATACGTGAGTGCCTTTGACGCTTCCTGCACTCTGA
TCCGTGTGACTTTAGCACGACATGACTGATATGATTCGCAGCAGCATTGC
TGCATTAGTTTGTCCGAGGTGTCGTGTTTTAATCGGCATATGATGGTGTT
TTCTGTACCCGCCGTTCAAGACAGGTGTTCCAAGTGGCTGTTCTCCGTTA
GGTACCAGTACATGTCAGCGGCGGGAGTTGGTTTGCGCTTTGATAATTGC
ACCGCGTTTTTGAACGCACAGGAGGCATCACACCCAGCACGCTAACGAAC
GGGCGGCGCATGAAACGACATGAAAGCATGAACACAATAATATCCCGATG
TCTAGTGACTGATCAACGGCGCGTACTGCGATCATACATCGAACATGAGA
CTCTAGTCCACGGCAAGCATGAGAAAGACTCGCTCGCCGTATGTCTTAGG
CAGCACTCGTGCGCACTCGGTGCGAAGACAACCCACTCGTTTTCACCGTG
AATGGTACTCAACACGGACCCCACCAAATTTCCTAACAGCTTTTTTCTCG
GCCGACGGGTTCCCTGTACCGTGACAGTGTTCCTGATCTTCGTGGTTCCA
AGGATCGCCTGTTCACGATTTTGGGTGACTCTGTGGCTCTGTAAACTTTG
GTGTACTCACAATCTTTGGCTTGTCTTGGATCTCTTAACGATAGCTCGAG
AAAACTATTTGCACCTACAGTCTAGGATTGACCTTGGGGAACCGTAGTGT
GTGCGGCGAAACGCTCGTGGTTGATGCTCATGGAATGTAAATTGTGAGTT
CATGGCGTAAAGAAGCATGTGGACACCGCACGAAGAATGGTATCCATCCA
GACCCCCCGGAAATGCCGTCAAGGCTGTTGCTCAGTAAGCGCCGACGGAC
GAAGTGAACGTTTCTGCTGGAAAGGGCGGCGTTGTTTGATAGTCGACTCT
CGAGGGAAGCCGCAAAAGCATGGATCTCATTTGTCGGGTTGAAGACCTGT
TGCGACTGTATGGTCGAAATCTATCTTTTTCAGCGGTTGAAACGTTCTTT
GGACAAAAGCTGTACTGGTAATTGAAACGTCCTTGGGTAATGGCCGGCAA
CATCTGATCAAAACATGAGACCTCTTGAACACCTGCAGTGCGTGGTTGCG
CGTTTCACACGTTTCAGTAATACGTCGTTTGTGCTCGCGTTGCTTGGTAT
ACAGTAGCGAGTGAAATATTCGCGGTCGTGTATTACGAGTGCTCGGTCAT
CCACTTTTCTCCTCAGTTGCCTTTTTTCCGAATTGTGTCCGGTGTGTCAC
CTTCAAACCGTCTCGAAATTTTTGGTTTATCTCGAAACAGCGAATCGTTT
TTGTAGGCAACCATTCCTCACCGAAAGCCGTTTCGCGAAACACCGGCCAC
TTTCTCCTGTGTGCCCTCGTGTACAATAACTGGTTTCTTCCATCCGCTGC
ACTGCATGCTTCGAAGCACATGGCACTGGTTAAAGTCTCTCTGCCGTACT
CTTTCGTCCCTGCCAATTCTTGGACCTCGCTGAAGTTTGAAAAAACTGAA
AAATACTACTTCCGTACTTCGCATTCAAGAGTATAGTTTTCAAGTTCAAA
TTTCCGCACATCCACCCCCACGTTCCCTCGTCCTCCTGTACATAAATTTC
TTCCTTTTCACAGATGTTCCGCATCTCCGGCGGCAACGACAAGCAGGGCT
TTCCCATGAAGCAGGGTGTCCTCTCGACCAACCGCGTCCGCCTTCTGATG
CACAAGGGTGTGTCCTGCTACCGCCAGCGCCGCCGCGGAGAGCGCAAAAG
GAAGTCGGTGCGCGGCTGCATCGTCGCCGCCGACCTCGCCGTGCTCAACC
TTGTGGTGACCAAGAAGGGCGACCAGGACATCCCCGGACTCACGGACGCC
CCCGTGCCCCGCCGCCTGGGCCCCAAGCGCGCGAACAACATCCGCAAGCT
GTTCAACCTCAGCAAGGTGAAAAAGACCGGGACGCGGTCGGTTGGTTCCG
AGTTCAGGATTGGCTCGAAGTGCTGTTGAAGTGATTGTTGATCAAGGTCA
ATATTGCTCTGCAATCCGCGTGCGGCCAGTGAGGGCCGTTTGTAAGAACT
GCCTGCTGAGTTGTGTTGACCTTTCCGGTCGTTGGCCACAGTAAAACAGT
GGACCGGTTTTTCGCCTCTGGTGAACTCCGTCATCTGTTGACACTGCCTA
CTGCTCGCTTTTTTCTGTGTTTTGCCCACGTTTTGGTGGTGATTTCTATT
TTCCTCAGGACGACGACGTGAGGAAGTACGTGATCGCTCGTAAGTTTGAG
AAGAACGGCAAGACCGTGACCAAGCGCCCCAACATCCAGCGCCTGATCAC
CCCCATCCGCCTCCAGCGCAAGCGCGCGCGCGCCGCGGCCAAGAAGGTCT
GCCAGGCAAAGAGCCAGCGCGATGCGTCGGAGTACGCCAGGTGCGTCCCA
TCCCATCATACCGCTGTGGATTTCATCTGATGGTGGAATGAAGTTTTCCG
TGTTTGACCCCCATTCCACGACAACTTGGTGTACCTCGCTTCGTCGGGAA
GTTCTGAACATCTACGTAAATTGTTGGGAGTTGTCGGTGTCCATTTTTTT
AGAACGCCTTGCATCCCTTCTCGCTTCTCCCTCGTGCACGACGCACGTCT
TTCCTCCTTAGTTTTCGTGTGTGTTTTGGTACTCGTTGTGTTCAACAGCG
TTTTTCTGTGTCGTGCCCACCGAAAAGCAAGCCCGACGTCTTTCTTTGCG
CCTGCCTCGTTTCACTACACGATTGCGTACAGTGTCTATCCACCGCTCTG
TAAGTTTTGATCGTCCGGTACGCTCAGCGTCAACAGGCGCAAAATCTGCG
CGGTGTCTCGCGTGCAGTTCCCCGTCACCAGTCTCTCCCAGCACGTCTCT
CGAAGCCCGTACTGCACTTGACCTATTTGTTTTTCCATGTTTTTTTTTTA
CGAAAACTTCAATGTGTCGCCTCTCGCTAGAACAAGGATCTAGAGAAGTT
AGCAAGGAACACAGAGAGCGATACATCTGTTTCTGCAACTCAACATAAGA
CAAAACGATGCAGCTCCCCTGAGGGTACCAGGCTCAACACGACAATCTGA
GAGTCTTGTGTTACAAGAAATTTCATCGTTTGTGGTGGGAACCATTCAGG
CCGAGCCGAATGGTATGACATGAAAAGGTGTCGAGATGTATACAGGTATA
GAACGAAGGCTTCGGAGCTCACGGTTTTCCTTTCCCTCGTCCCGTCTTTC
TCTCGTCCTCCCCCAGCCTGTACGCCCAGCGCCAAAAGGAGCAGAAAGAG
GCCCGCCGCTCCATGATCTCCAAGAGGCGCAGCTCCCGCAAGGCCTCGGC
CAAGGTCACGGCATAAGAGTTGCCGCAGACAGTGCACGCTAAGGCGCAGC
ATGACTCGTATTGTGCGGACTGGTTGCGCTGGAGTAATACTGCTGTGACG
TCGCTGACCCGTACTTAGCCATTGAGCTGCCACAGGATTAGGACCCCTGG
CGGATTCGGCTTGACGGGGTTTGCGGACCTTGCGCTGTGCGCGTTGCCGC
GTCGTTTTTAGGCGGTTTCGCGGTTTGCGTTCAATTAACGGGGGACATTA
AAAACCTGTTTTTGTTGTTGCGTGTGGTGGTGGTCGCGGCGATGGTGGTG
TTTTCGCCTGAGGCAGCAGCAAACATCGACCAGCCACGCCCCACTCGCGT
GGCTCCTTGGAGGTGTGCTCCTACTGTACCGGGCTTTTCCAATTTTTTAT
GTGCACACACATGGATCACGCGCGGGTGAAATCATGTGCGATGTTCCTTA
TCATCCTCAAAGCTCCACACACCCCGTTGGGTGGTCTTGGACAATAACTC
TTGCGACTCCCCGAGGTTAGATACACTGATACAGTAGAGGAGTCTCTGTT
CTGGGCACCTTCGACGGGTGAGCCTGCCTCGAACAGAAGACACGAGAGAC
CCCCACTCTGTATCGCCCGAAAATCATGCGGTTGGTTTCTATACCTACTG
TAAAACATTTCACAGCTGTTGAAGTTTCCCCACTGCTGTTCTGATGATTG
CGTTGCGCTGCCCTTGCGAGTGGATGCAAACCAGATCTTGTCGGAGTACG
GACAGTGAACTCGATCATTTTGTGGGGTGGGTCCAACGTAAAGCGCGGCC
CTGGCTAAACATTTCCCGGGTACCCGGTACCGGGCACTACCCGGTATGTT
CTGGGTAGCATAATGCCACCCGGGCAGTTGAAATCGCAATACGGTGCCCT
TTCGGTATTGGGATTCCCCCATGAACACGGCAAACGGCGACCCCTAACAA
TTTTTTTGGCGCACGGTATCTTTGCGGGATCTTATGGCACACCGGTTTTA
AGCCACAGGTCTTCAAACCTCGTTGAAAAAATAAACTGGTCAACGTTATG
GATACAGATTTTGGGCAAAACGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig738:127679..133252-

>mRNA_P-littoralis_Contig738.27.2 ID=mRNA_P-littoralis_Contig738.27.2|Name=mRNA_P-littoralis_Contig738.27.2|organism=Pylaiella littoralis U1_48|type=CDS|length=729bp|location=Sequence derived from alignment at P-littoralis_Contig738:127679..133252- (Pylaiella littoralis U1_48)
ATGAAGCTTAACATTGCTTCGCCCTCCACGGGCTCCCAGATGTTCATCGA
GATCGATGACGAGAAGAAGCTCCGTGCCTTGTACGACAAGCGCATCTCTC
AGGAGGTGGAGGGAGAGGCTCTTGGAGACGAGTTCGCTGGATACATGTTC
CGCATCTCCGGCGGCAACGACAAGCAGGGCTTTCCCATGAAGCAGGGTGT
CCTCTCGACCAACCGCGTCCGCCTTCTGATGCACAAGGGTGTGTCCTGCT
ACCGCCAGCGCCGCCGCGGAGAGCGCAAAAGGAAGTCGGTGCGCGGCTGC
ATCGTCGCCGCCGACCTCGCCGTGCTCAACCTTGTGGTGACCAAGAAGGG
CGACCAGGACATCCCCGGACTCACGGACGCCCCCGTGCCCCGCCGCCTGG
GCCCCAAGCGCGCGAACAACATCCGCAAGCTGTTCAACCTCAGCAAGGAC
GACGACGTGAGGAAGTACGTGATCGCTCGTAAGTTTGAGAAGAACGGCAA
GACCGTGACCAAGCGCCCCAACATCCAGCGCCTGATCACCCCCATCCGCC
TCCAGCGCAAGCGCGCGCGCGCCGCGGCCAAGAAGGTCTGCCAGGCAAAG
AGCCAGCGCGATGCGTCGGAGTACGCCAGCCTGTACGCCCAGCGCCAAAA
GGAGCAGAAAGAGGCCCGCCGCTCCATGATCTCCAAGAGGCGCAGCTCCC
GCAAGGCCTCGGCCAAGGTCACGGCATAA
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