mRNA_P-littoralis_Contig737.6.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE) HSP 1 Score: 124 bits (310), Expect = 7.120e-30 Identity = 71/198 (35.86%), Postives = 100/198 (50.51%), Query Frame = 3
Query: 15 TGQMTRMFIMLGRAVRVAANSVFKIVCVDAGFLKGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKARELPQSQFRNCVKHLIGNLNKGIGPNVTLALFEASKTPHSTTFNKIMEETVLSEMPHAYQHFMK-LDKALWTHHASCQTTRVADQSTTNLAE 605
TG+ +F+MLGRA A S K+V +D G LKGE+ G ++ L+ KD++N + A I KE+ Y L R KKN +M L TT + D H G A E P +Q R C++HLI NL + IG N +F A++ P I+++ VL P AY + + W H T + D T NL+E
Sbjct: 169 TGRFRSVFVMLGRAAHAAVRSPIKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSNANSWVFFAARAPTKKQCEDILKQHVLPSKPRAYVQIIDDWKRHEWAHSGGPPDTALQDVVTNNLSE 366
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE) HSP 1 Score: 120 bits (301), Expect = 1.260e-28 Identity = 65/165 (39.39%), Postives = 90/165 (54.55%), Query Frame = 3
Query: 15 TGQMTRMFIMLGRAVRVAANSVFKIVCVDAGFLKGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKARELPQSQFRNCVKHLIGNLNKGIGPNVTLALFEASKTPHSTTFNKIMEETVLSEMPHAY 509
TG+ +F+MLGRA R A S K+V +D G LKGE+ G ++ L+ KD+ N ++ A I KE+ Y L R K NP+M L TT + D H G A RE P +Q R C++HLI NL + IG N +F A++ P I+++ VL P AY
Sbjct: 211 TGRFPSVFVMLGRAARAAVRSPVKVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLLRNCK-NPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLILNLEEKIGSNANSWVFFAARAPTKKQCEDILKQHVLPSKPRAY 374
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.360e-23 Identity = 68/210 (32.38%), Postives = 100/210 (47.62%), Query Frame = 3
Query: 84 KIVCVDAGFLKGEYEGQIIVLSTKDSDNRLVM-----------------------------AAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKARELPQSQFRNCVKHLIGNLNKGIGPNVTLALFEASKTPHSTTFNKIMEETVLSEMPHAYQHFMKLDK----ALWTHHASCQTTRVADQSTTNLAESNM 614
+++CVDAG LKG++ G ++V ++KD+D +LV A +I DKEN DNY++ + K N +MA LNSP TT++ D H A P + +R C++H I L + G VT L+ A++ P T F M+ V P AY + +K WTHHA T + ++N AE NM
Sbjct: 64 QVLCVDAGHLKGDWNGMMLVATSKDADTKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVATSICDKENTDNYSWFYLMMKNNVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALPEAPGQTVTHWLYHAARAPTRTKF---MDTKVKPTKPKAYAALLDPNKPHELVKWTHHAGPTDTAIGGVVSSNAAEQNM 270
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: D7FMJ7_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ7_ECTSI) HSP 1 Score: 103 bits (257), Expect = 3.360e-22 Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 3
Query: 87 IVCVDAGFLKGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKARELPQSQFRNCVKHLIGNLN-KGIGPNVTLALFEASKTPHSTTFNKIMEETVLSEMPHAYQHFMKLDKALWTHHAS 557
+V +DAG L+G + G + VL DS+N++ + +ADKENA NY +L +E +N M L+S + T Y DGH G+P A LPQ+ + CV+HLI + N K +G + A++ A+ P F + +E Y MK D WTHHA+
Sbjct: 17 VVALDAGHLRGSWNGVMYVLCMHDSNNKITHVSTVLADKENAANYKFLLQEICQNEHMQRLLSSGEVTFYIDGHKGSPAALRVVLPQAPWCACVRHLITDQNMKAMGHAFSDAVYRAAVMPTKALFEEGIEPVK------KYGILMKNDLEKWTHHAT 168
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.220e-20 Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 3
Query: 15 TGQMTRMFIMLGRAVRVAANSVFKIVCVDAGFLKGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKARELPQSQFRNCVKHLIGNLNKGIG 404
TG+ +F+ML RA A S K+V +D G LKGE+ G ++ L+ KD++N + A I KE+ Y L R KKNP+M L TT + D H A E P +Q R+C++HLI N+ + IG
Sbjct: 172 TGRFRSVFVMLRRAAHAAVRSPMKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLILNIEEKIG 301
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: A0A6H5JAP9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP9_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.990e-16 Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 3
Query: 114 KGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKARELPQSQFRNCVKHLIGN 386
KG+++G I +S K ++N ++ A + KE AD Y YL A KNPEMAAFLN P TTI D H G+ A R L ++ C +H++ N
Sbjct: 7 KGDWDGPIGAISVKSANNNVLQVATCLHPKETADAYTYLMSNALKNPEMAAFLNKPTTTIITDKHKGSESAVPRVLQLAEHLKCAEHILKN 97
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: UPI00053AFB1C (uncharacterized protein LOC104779135 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AFB1C) HSP 1 Score: 63.2 bits (152), Expect = 4.490e-8 Identity = 47/194 (24.23%), Postives = 90/194 (46.39%), Query Frame = 3
Query: 30 RMFIMLGRAVRVAANSVFKIVCVDAGFLKGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKARELPQSQFRNCVKHLIGNLNKGIGP-NVTLALFEASKTPHSTTFNKIMEETVLSEMPHAYQHFMKLDKALWTHHASCQTTRVADQSTTNLAES 608
R+FI N+ I+ ++ FLK + +G ++ + +D DNR+V A+A+ + EN DN+ + R+ ++ + + I +D G A +PQS+ R C +H++ N + + L++ +++ F ME + S P AY +K + W+ A + + + NL+ES
Sbjct: 286 RLFICFNSQRDAWNNTCRPIIGINGAFLKWDVKGHLLAVVGRDGDNRIVPIAWAVVEIENDDNWDWFLRQLSAKLDLQ---DGKNIAIISDKQSGLVKAIHEIIPQSEHRQCARHIMDNWKRNSHDMELQRLLWKIARSYTVGEFGGHME-ALRSYNPSAYDSLLKTNPRTWSR-AFFRIGSCCNDNLNNLSES 474
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: UPI0007EF2E94 (uncharacterized protein LOC108221853 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF2E94) HSP 1 Score: 60.8 bits (146), Expect = 2.700e-7 Identity = 48/183 (26.23%), Postives = 86/183 (46.99%), Query Frame = 3
Query: 87 IVCVDAGFLKGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKAREL-----PQSQFRNCVKHLIGNLNKGI-GPNVTLALFEASKTPHSTTFNKIMEETVLSEM-PHAYQHFMKLDKALWTHHASCQTTRVA--DQSTTNLAES 608
++ +D FLKG+Y G+++V DS+N FA+ D+E +N+++ R +++ + I +D G A E P R C+ H+ N +K G ++ + ++ A TP ++ M++ + E+ P + + + ALWT C T A Q+TTN+ ES
Sbjct: 89 VISIDGTFLKGKYNGKLLVAVGVDSNNHQYPICFALVDEETTENWSWFLRLLRRH----VCRDRLGVCIISDRATGILAAMNDEASGFTPPMGYHRFCLHHVRSNFSKAFPGKDLKMYMWLAGNTPQIRKYDAYMKK--IGELSPQGLRWLLGISPALWT---ICHDTGHARFGQATTNITES 262
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: UPI0007F01DAE (uncharacterized protein LOC108201701 n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F01DAE) HSP 1 Score: 60.8 bits (146), Expect = 3.030e-7 Identity = 48/183 (26.23%), Postives = 85/183 (46.45%), Query Frame = 3
Query: 87 IVCVDAGFLKGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKAREL-----PQSQFRNCVKHLIGNLNKGI-GPNVTLALFEASKTPHSTTFNKIMEETVLSEM-PHAYQHFMKLDKALWTHHASCQTTRVA--DQSTTNLAES 608
++ +D FLKG+Y G+++V DS+N FA+ D+E +N+++ R +++ + I +D G A E P R C+ H+ N +K G + + ++ A TP ++ M++ + E+ P + + + ALWT C T A Q+TTN+ ES
Sbjct: 517 VISIDGTFLKGKYNGKLLVAVGVDSNNHQYPICFALVDEETTENWSWFLRLLRRH----VCRDRLGVCIISDRATGILAAMNDEASGFTPPMGYHRFCLHHVRSNFSKAFPGKELKMLMWLAGNTPQIRKYDAYMKK--IGELSPQGLRWLLGISPALWT---ICHDTGHARFGQATTNITES 690
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Match: UPI000539E983 (uncharacterized protein LOC104763362 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI000539E983) HSP 1 Score: 60.5 bits (145), Expect = 3.780e-7 Identity = 48/193 (24.87%), Postives = 85/193 (44.04%), Query Frame = 3
Query: 33 MFIMLGRAVRVAANSVFKIVCVDAGFLKGEYEGQIIVLSTKDSDNRLVMAAFAIADKENADNYAYLFREAKKNPEMAAFLNSPDTTIYADGHLGTPVAKARELPQSQFRNCVKHLIGNLNKGIGPNVTLALFEASKTPHSTTFNKIMEETVLSEMPHAYQHFMKLDKALWTH-HASCQTTRVADQSTTNLAES 608
+FI G ++ + K++ VD FLKG+YEG ++V + +D + ++ AF I D E+ + + F ++ +SPD I +D H A + P ++ C HL N+ + L L + + +S + + + P + K LW+ H S V +T+N+AES
Sbjct: 254 LFISFGACIQ-GFKFLRKVIVVDGSFLKGKYEGLLLVATAQDGNYKIFPIAFGIVDSEDNAAWEWFFNRLRE-----VIPDSPDLVIISDRHKSIAKAITKVYPAARRGICTYHLKKNIITKFRGSENLGLVKQAANAYSLPEFEDAFRQIRHDNPRLANYLEKAGVTLWSRAHFSGNRYNV---TTSNIAES 437 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig737.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig737.6.2 >prot_P-littoralis_Contig737.6.2 ID=prot_P-littoralis_Contig737.6.2|Name=mRNA_P-littoralis_Contig737.6.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=207bp MTRMFIMLGRAVRVAANSVFKIVCVDAGFLKGEYEGQIIVLSTKDSDNRLback to top mRNA from alignment at P-littoralis_Contig737:45533..47693- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig737.6.2 ID=mRNA_P-littoralis_Contig737.6.2|Name=mRNA_P-littoralis_Contig737.6.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2161bp|location=Sequence derived from alignment at P-littoralis_Contig737:45533..47693- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig737:45533..47693- >mRNA_P-littoralis_Contig737.6.2 ID=mRNA_P-littoralis_Contig737.6.2|Name=mRNA_P-littoralis_Contig737.6.2|organism=Pylaiella littoralis U1_48|type=CDS|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig737:45533..47693- (Pylaiella littoralis U1_48)back to top |