mRNA_P-littoralis_Contig737.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig737.32.1
Unique NamemRNA_P-littoralis_Contig737.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig737.32.1 vs. uniprot
Match: D8LFC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC4_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.290e-10
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:   73 RLSSIVRAAGDASEESEALPLAVFPRCVQPGCERDGSFVMVTCDICNGALHRSCGA---TTDDDDEECE-PGHRCTTCATRSGKRKHA 324
            R   + RA  D S  S  LP+   P C++P C   G+  MV+C+ICNG +HR CG    T +DD E  +  G RC+ CA  +  +K A
Sbjct:  213 RHGDLGRAEADTSAASANLPVIYCPACIEPECNMSGNMSMVSCNICNGNIHRFCGVLGGTRNDDGETNDFEGTRCSPCAAANKGKKRA 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig737.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFC4_ECTSI7.290e-1039.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig737contigP-littoralis_Contig737:123615..123944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791523.368182-UTR-P-littoralis_Contig737:123614..1236291680791523.368182-UTR-P-littoralis_Contig737:123614..123629Pylaiella littoralis U1_48UTRP-littoralis_Contig737 123615..123629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791523.3826497-CDS-P-littoralis_Contig737:123629..1239441680791523.3826497-CDS-P-littoralis_Contig737:123629..123944Pylaiella littoralis U1_48CDSP-littoralis_Contig737 123630..123944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig737.32.1prot_P-littoralis_Contig737.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig737 123630..123944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig737.32.1

>prot_P-littoralis_Contig737.32.1 ID=prot_P-littoralis_Contig737.32.1|Name=mRNA_P-littoralis_Contig737.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MRDPPPVAMPAPSVHALRDRLSSIVRAAGDASEESEALPLAVFPRCVQPG
CERDGSFVMVTCDICNGALHRSCGATTDDDDEECEPGHRCTTCATRSGKR
KHAG*
back to top

mRNA from alignment at P-littoralis_Contig737:123615..123944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig737.32.1 ID=mRNA_P-littoralis_Contig737.32.1|Name=mRNA_P-littoralis_Contig737.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig737:123615..123944+ (Pylaiella littoralis U1_48)
AACCAACTCGGCTGGATGCGCGACCCACCTCCCGTTGCAATGCCAGCGCC
GTCGGTGCATGCTCTACGTGACAGACTTTCTTCCATCGTGCGGGCAGCCG
GTGATGCATCAGAGGAATCTGAGGCTCTTCCCCTAGCGGTTTTCCCTCGG
TGTGTCCAACCTGGGTGTGAAAGAGACGGCAGCTTCGTCATGGTGACGTG
CGACATCTGCAACGGCGCCCTACACCGTTCCTGCGGAGCTACTACCGACG
ACGACGACGAGGAATGTGAACCTGGCCATCGCTGCACGACCTGCGCCACC
CGTAGCGGCAAAAGGAAGCACGCGGGATAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig737:123615..123944+

>mRNA_P-littoralis_Contig737.32.1 ID=mRNA_P-littoralis_Contig737.32.1|Name=mRNA_P-littoralis_Contig737.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig737:123615..123944+ (Pylaiella littoralis U1_48)
ATGCGCGACCCACCTCCCGTTGCAATGCCAGCGCCGTCGGTGCATGCTCT
ACGTGACAGACTTTCTTCCATCGTGCGGGCAGCCGGTGATGCATCAGAGG
AATCTGAGGCTCTTCCCCTAGCGGTTTTCCCTCGGTGTGTCCAACCTGGG
TGTGAAAGAGACGGCAGCTTCGTCATGGTGACGTGCGACATCTGCAACGG
CGCCCTACACCGTTCCTGCGGAGCTACTACCGACGACGACGACGAGGAAT
GTGAACCTGGCCATCGCTGCACGACCTGCGCCACCCGTAGCGGCAAAAGG
AAGCACGCGGGATAA
back to top