mRNA_P-littoralis_Contig736.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 144 bits (364), Expect = 4.960e-35 Identity = 84/219 (38.36%), Postives = 122/219 (55.71%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQLRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQG-HTYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKN--VDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGG 657
D+G++ H+ ++ Y C++ +RVA+G I G GD+ V S G + L VAH P Y+L+SL + G T + + + G+ + P GNL+ G+R + E CA +APG + VDIN +H + H+HE+LLR +A QQG L +L C+GCS AKG+S PI T+ R+ KKL RVFVDL+GK V+S+GG
Sbjct: 372 DTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFR--THTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGG 586
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 144 bits (364), Expect = 5.000e-35 Identity = 84/219 (38.36%), Postives = 122/219 (55.71%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQLRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQG-HTYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKN--VDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGG 657
D+G++ H+ ++ Y C++ +RVA+G I G GD+ V S G + L VAH P Y+L+SL + G T + + + G+ + P GNL+ G+R + E CA +APG + VDIN +H + H+HE+LLR +A QQG L +L C+GCS AKG+S PI T+ R+ KKL RVFVDL+GK V+S+GG
Sbjct: 385 DTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFR--THTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGG 599
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 144 bits (364), Expect = 5.030e-35 Identity = 84/219 (38.36%), Postives = 122/219 (55.71%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQLRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQG-HTYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKN--VDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGG 657
D+G++ H+ ++ Y C++ +RVA+G I G GD+ V S G + L VAH P Y+L+SL + G T + + + G+ + P GNL+ G+R + E CA +APG + VDIN +H + H+HE+LLR +A QQG L +L C+GCS AKG+S PI T+ R+ KKL RVFVDL+GK V+S+GG
Sbjct: 528 DTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFR--THTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGG 742
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5L8P7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P7_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.340e-33 Identity = 82/218 (37.61%), Postives = 121/218 (55.50%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQLRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQGHTYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKN--VDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGG 657
D+G++ H+ ++ Y C++ +RVA+G I G GD+ V S G + L VAH P Y+L+SL + G ++ + G+++ P NL+ G+R + E CA +APG + VDIN +H + H+HE+LLR +A QQG L +L C+GCS AKG+S PI T+ R+ KKL RVFVDL+GK V+S+GG
Sbjct: 192 DTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKYDLELERGGESVRFPRYSNLYVQNGFR--THTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGG 405
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5KSX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX8_9PHAE) HSP 1 Score: 129 bits (323), Expect = 9.010e-32 Identity = 78/205 (38.05%), Postives = 115/205 (56.10%), Query Frame = 1
Query: 61 YRPCNKFLRVASGAQLRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQGH-TYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKN--VDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGGSSI 666
Y+ C++ +RVA+G + G GD+ V S G + L VA+ + +L+ L + G T D + + + G+++ P GNL+ G+R + E CA +APG + VDIN +H + H+HE+LLR +A QQG L +L C+GCS AKG+S PI T+ R+ KKL RVFVDL+GK V+S+GG I
Sbjct: 11 YQECDRRVRVAAGETFPVVGYGDVTVTLSSRDGITDLILKWVAYVTRSDDNLVFLTSLFDDGFKTKTLDKHELELEKEVGESVYFPRCGNLYVQNGFR--THTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKCI 211
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.300e-31 Identity = 81/219 (36.99%), Postives = 119/219 (54.34%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQLRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQG-HTYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKN--VDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGG 657
D+G++ H+ ++ Y C++ +RVA+G I G GD+ V S G + L VAH P Y+L+SL + G T + + + G+ + P GNL+ G+R + E+ A +APG + VDIN +H + H+HE+LLR +A QQG L +L C+ CS AK +S PI T R+ KKL RVFVDL+GK V+S+GG
Sbjct: 237 DTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFR--THTERARAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLV--GELRECLRCSAAKWLSKPIPNKTWTRAVKKLQRVFVDLSGKARVQSLGG 451
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE) HSP 1 Score: 129 bits (325), Expect = 6.900e-30 Identity = 76/217 (35.02%), Postives = 118/217 (54.38%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQLRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQG-HTYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKNVDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGG 657
D+G++ H+ ++ Y C++ +RVA+G I G GD+ V S G + L VAH P Y+L+SL + G T + + + G+++ +P GNL+ G R +E T + S+ V+IN +H + H+HE+LLR +A QQG L +L C+GCS AKG+S I T+ R+ K+L RVF+DL+GK V+S+ G
Sbjct: 398 DTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRGGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFQTKTLNKHELELERGGGESVYSPRCGNLYVHNGCRTHTEHAYTAIAPGDAKASSAPVEINDFHYAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVG 612
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5JS61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS61_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.040e-29 Identity = 78/218 (35.78%), Postives = 116/218 (53.21%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQL-RIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQGHTYNG-DSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKNVDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGG 657
D+G++ H+ + Y+ CN+ +RVA+G I G GD+ V S G + L VAH P Y L+ L + G N + + + +G+++ P GNL+ R +E T V + S+ VD+N +H + H+HE+LLR +A Q+G L KL C+GCS AK +S PI T+ R+ KKL RVF DL+GK V+S+GG
Sbjct: 337 DTGTTTHMFASSNGFVRYQECNRRVRVAAGENFFPIAGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYKLVFLTSLFDGGFETNTLNKHELELERGAGESVYFPRCGNLYVQNRVRTHTEHAYTAIVSGNAKASSAPVDVNDFHCTHDHSHEVLLRTTAKQKGTTLV--GKLRECLGCSTAKRLSKPIPNKTSTRAAKKLQRVFADLSGKARVESLGG 552
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE) HSP 1 Score: 127 bits (319), Expect = 4.680e-29 Identity = 76/198 (38.38%), Postives = 111/198 (56.06%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQ-LRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQGH-TYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKN--VDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRS 591
D+G++ H+ A NY C++ L VA+G Q I G GD+ V S G + L VAH P +Y+L+SL A +KQ D R + + + G+++ PL G+L G+R+ S E CA++APG VDIN +H + H+HE+LL+ +A QQGV L +L C+GCS AKG+S PI T+ R+
Sbjct: 961 DTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRINSGRELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLV--GQLRECMGCSTAKGLSKPIPNRTSTRA 1156
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE) HSP 1 Score: 127 bits (318), Expect = 5.820e-29 Identity = 76/198 (38.38%), Postives = 111/198 (56.06%), Query Frame = 1
Query: 10 DSGSSGHVSFDATKMTNYRPCNKFLRVASGAQ-LRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTASYHLLSLPACVKQGH-TYNGDSRGITMHLKSGQTLLAPLVGNLHYAYGYRLGSEIEQTCAVLAPGRLSTKN--VDINAYHRSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRS 591
D+G++ H+ A NY C++ L VA+G Q I G GD+ V S G + L VAH P +Y+L+SL A +KQ D R + + + G+++ PL G+L G+R+ S E CA++APG VDIN +H + H+HE+LL+ +A QQGV L +L C+GCS AKG+S PI T+ R+
Sbjct: 483 DTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLV--GQLRECMGCSTAKGLSKPIPNRTSTRA 678 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig736.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig736.1.1 >prot_P-littoralis_Contig736.1.1 ID=prot_P-littoralis_Contig736.1.1|Name=mRNA_P-littoralis_Contig736.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=207bp MTNYRPCNKFLRVASGAQLRIEGRGDLLVDFQSGPGQVRVKLMSVAHAPTback to top mRNA from alignment at P-littoralis_Contig736:12763..13667- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig736.1.1 ID=mRNA_P-littoralis_Contig736.1.1|Name=mRNA_P-littoralis_Contig736.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=905bp|location=Sequence derived from alignment at P-littoralis_Contig736:12763..13667- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig736:12763..13667- >mRNA_P-littoralis_Contig736.1.1 ID=mRNA_P-littoralis_Contig736.1.1|Name=mRNA_P-littoralis_Contig736.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig736:12763..13667- (Pylaiella littoralis U1_48)back to top |