mRNA_P-littoralis_Contig734.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig734.5.1
Unique NamemRNA_P-littoralis_Contig734.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: A0A6H5JX66_9PHAE (PDEase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX66_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 8.540e-55
Identity = 84/97 (86.60%), Postives = 93/97 (95.88%), Query Frame = 2
Query:    2 PHFHNFVVEVEQGYGSGKGAGVGNIYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            PHF+ F+V+VEQGYGSG GAGV N+YH+R+HAADVTQAVHYFL+VCNLG+HLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGH LA+TYNDVSVLE
Sbjct:   64 PHFNTFMVKVEQGYGSGTGAGVTNVYHSRRHAADVTQAVHYFLKVCNLGQHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHKLAITYNDVSVLE 160          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: D8LHP5_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHP5_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 4.450e-52
Identity = 84/97 (86.60%), Postives = 93/97 (95.88%), Query Frame = 2
Query:    2 PHFHNFVVEVEQGYGSGKGAGVGNIYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            PHF+NF+V+VEQGYGSGKGAGV N+YH+R+HAADVTQAVHYFL+VCNLG+HLQD EVAALLLGSLIHDFKHPGRSNAFLTR GH LA+TYNDVSVLE
Sbjct:   77 PHFNNFMVKVEQGYGSGKGAGVTNVYHSRRHAADVTQAVHYFLKVCNLGQHLQDAEVAALLLGSLIHDFKHPGRSNAFLTRIGHKLAITYNDVSVLE 173          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: A0A836CMF4_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF4_9STRA)

HSP 1 Score: 139 bits (350), Expect = 6.380e-37
Identity = 62/96 (64.58%), Postives = 80/96 (83.33%), Query Frame = 2
Query:    5 HFHNFVVEVEQGYGSGKGAGVGNIYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            HF N++V++E GYGSG G G  ++YHNR+H ADVTQAVHYF++VC+LG  L D+E++ LLLG+++HDFKHPGRSNAFL +T   L+L YNDVSVLE
Sbjct:  172 HFTNYIVQIEAGYGSGLGKGSVSVYHNRRHMADVTQAVHYFMQVCHLGASLTDIEMSGLLLGAIVHDFKHPGRSNAFLIKTFSELSLVYNDVSVLE 267          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: A0A836CJS2_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.290e-27
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = 2
Query:   74 IYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            +YHNR+HAADVTQAVHYF++VC+LG  L D+E+ +LLLG+++HDFKHPGRSNAFL +T   L+L YNDVSVLE
Sbjct:  541 VYHNRRHAADVTQAVHYFMQVCHLGASLTDIEMISLLLGAIVHDFKHPGRSNAFLIKTFSELSLVYNDVSVLE 613          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: A0A1R2ATU2_9CILI (Phosphodiesterase n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ATU2_9CILI)

HSP 1 Score: 90.9 bits (224), Expect = 2.950e-19
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 2
Query:    8 FHNFVVEVEQGYGSGKGAGVGNIYHNRQHAADVTQAVHYFLRVCNLGE--HLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            F NF+  ++ GY         N+YHN  HAADV Q+++YFL  C   E   L D ++A  L+ + IHD+ HPG +N FL  T H+LALTYND SVLE
Sbjct:  336 FLNFIQAIQNGYHKD------NLYHNSIHAADVVQSIYYFLSTCQAIEICQLTDSDIAVCLISAAIHDYDHPGLNNIFLINTTHSLALTYNDKSVLE 426          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: A0A7S1KLP0_9EUKA (Phosphodiesterase n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KLP0_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 9.380e-18
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 2
Query:    2 PHFHNFVVEVEQGYGSGKGAGVGNIYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            P   +F++ +E GY       + N YHN+ HAADVTQ VH  L+  N+  +L D+++ +++L +L+HDFKHPGR+NAF  +     AL +ND S+LE
Sbjct:  582 PRLKHFLLSLENGY-------LLNPYHNKLHAADVTQCVHSILQTGNILSYLTDLDIFSIILAALVHDFKHPGRTNAFEMKKLTERALMFNDQSILE 671          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: UPI0012D4AB5C (calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1-like isoform X1 n=5 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D4AB5C)

HSP 1 Score: 84.3 bits (207), Expect = 6.100e-17
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 2
Query:   17 FVVEVEQGYGSGKGAGVGNIYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            F+V++E+GY         N YHN  HAADV Q +HY L    +  +L D+E+ A+L+ +LIHD++H G +N+F   TG  +A+ YND +VLE
Sbjct:  706 FLVKIEEGY-----CRYQNPYHNNLHAADVAQTIHYMLSQTGVMHYLTDLEIFAILIAALIHDYEHTGTTNSFHINTGSDMAMLYNDRAVLE 792          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: A0A0M3K1V1_ANISI (3',5'-cyclic-nucleotide phosphodiesterase n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3K1V1_ANISI)

HSP 1 Score: 82.4 bits (202), Expect = 1.740e-16
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 2
Query:   71 NIYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            N YHN  HAADV QA  YFL    +  H+QD    A L+ + +HD  HPGR NAFL  T  +LAL YND SVLE
Sbjct:  104 NPYHNATHAADVLQATSYFLDSPAVAHHVQDTHATAALIAAAVHDLDHPGRGNAFLINTRQSLALLYNDQSVLE 177          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: A0A7R9G958_9CRUS (3',5'-cyclic-AMP phosphodiesterase n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9G958_9CRUS)

HSP 1 Score: 82.8 bits (203), Expect = 2.080e-16
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 2
Query:   11 HNFVVEVEQGYGSGKGAGVGNIYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            HN++  +E  Y +       N YHN  HAADV QA+ YFL    + E ++ ++ AA L+ ++IHD  HPG+++AFL  T H LA+ YND SVLE
Sbjct:  422 HNWLQMIEAHYHAS------NPYHNATHAADVMQAIGYFLEFPVIKEAMEPLDNAACLIAAVIHDLDHPGKNSAFLVNTRHDLAVLYNDTSVLE 509          
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Match: A0A7E5WSF1_TRINI (high affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8 isoform X3 n=12 Tax=Noctuidae TaxID=7100 RepID=A0A7E5WSF1_TRINI)

HSP 1 Score: 82.8 bits (203), Expect = 2.100e-16
Identity = 46/93 (49.46%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   14 NFVVEVEQGYGSGKGAGVGNIYHNRQHAADVTQAVHYFLRVCNLGEHLQDVEVAALLLGSLIHDFKHPGRSNAFLTRTGHTLALTYNDVSVLE 292
            +++  +E  Y SG      N YHN  HAADV QAV YFL    L   L+ +E AA LL +  HD  HPG S+AFL    H LA+ YNDVSVLE
Sbjct:  587 HWLTIIETNYHSG------NTYHNSTHAADVLQAVAYFLEKDRLKSVLEPLEAAAALLAAAAHDVDHPGTSSAFLCNARHPLAVLYNDVSVLE 673          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig734.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX66_9PHAE8.540e-5586.60PDEase domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LHP5_ECTSI4.450e-5286.60Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CMF4_9STRA6.380e-3764.58Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A836CJS2_9STRA1.290e-2769.86Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A1R2ATU2_9CILI2.950e-1947.42Phosphodiesterase n=1 Tax=Stentor coeruleus TaxID=... [more]
A0A7S1KLP0_9EUKA9.380e-1843.30Phosphodiesterase n=1 Tax=Percolomonas cosmopolitu... [more]
UPI0012D4AB5C6.100e-1743.48calcium/calmodulin-dependent 3',5'-cyclic nucleoti... [more]
A0A0M3K1V1_ANISI1.740e-1654.053',5'-cyclic-nucleotide phosphodiesterase n=1 Tax=... [more]
A0A7R9G958_9CRUS2.080e-1644.683',5'-cyclic-AMP phosphodiesterase n=1 Tax=Notodro... [more]
A0A7E5WSF1_TRINI2.100e-1649.46high affinity cAMP-specific and IBMX-insensitive 3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig734contigP-littoralis_Contig734:31035..32062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size296
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791519.7607107-CDS-P-littoralis_Contig734:31034..311671680791519.7607107-CDS-P-littoralis_Contig734:31034..31167Pylaiella littoralis U1_48CDSP-littoralis_Contig734 31035..31167 +
1680791519.7725532-CDS-P-littoralis_Contig734:31900..320611680791519.7725532-CDS-P-littoralis_Contig734:31900..32061Pylaiella littoralis U1_48CDSP-littoralis_Contig734 31901..32061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig734.5.1prot_P-littoralis_Contig734.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig734 31035..32061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig734.5.1

>prot_P-littoralis_Contig734.5.1 ID=prot_P-littoralis_Contig734.5.1|Name=mRNA_P-littoralis_Contig734.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
AALPQFCSRGGAGVRVGQGCRSRQHLPQQTARCRCHAGGALFSQSVQSGG
APPGRRGGSPSSRLPDPRLQAPREKQRLPHQDRAHLGSHVQRRQRTRE
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mRNA from alignment at P-littoralis_Contig734:31035..32062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig734.5.1 ID=mRNA_P-littoralis_Contig734.5.1|Name=mRNA_P-littoralis_Contig734.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1028bp|location=Sequence derived from alignment at P-littoralis_Contig734:31035..32062+ (Pylaiella littoralis U1_48)
GCCGCACTTCCACAATTTTGTAGTCGAGGTGGAGCAGGGGTACGGGTCGG GCAAGGGTGCCGGAGTCGGCAACATCTACCACAACAGACAGCACGCTGCC GATGTCACGCAGGCGGTGCACTATTTTCTCAGAGTGAGGTCCTGAGATGA GATTTTGGCTCCTTTTTTTCTCTCTGCGGGTTACTTTACTTTTAGCATGC ACACACTGTACATCGAGTTTTTTTTTGTTTGCTCCTTGTGTATCTGATGG GTACTGTGTATGATACGGGGGAGAGGGAGCAAGGAAGGACTACAACAACA GTAGTGCTCTCGTATTTGTGGAGGGGTGGGGAATTCACACATCGCATACA AACGTGGTATTTGACAGGATACCCGTCTGAGAGTCTGCCAGGTGACGGGC ACTCTTGCTGGTAATGCTAGACATCGGATGCCTGTTAGTTGAAAGTGATG TTATGCCGGGGGAAGCTTGTGCCGAGATGCGGTTGGCTCCAAATTATTGC GGATTTTATCGTGGGGGGGGCAGAAGAAGCGTTTGACAGATCTGCTTCGA GCGATTCCTGTTCTGAAACCGACCAATCATTTCGCGAAGCACCGTTTTGT GTCGCGCCAGGGCTGGACATCTCATACTTCAAAGCGCCTCTCTGCAGGAG CCACACAAAGTCTCCTTGTTATTTTCATAGTTCCGACAGGTGTCTTCGTG CCCTTCTTTTTGAGTTTTGTAGCAAAGGATCTCACAAGCGGGGGGTGGCT CTGGCGTGACAAGATCGAGGGATCCTGAATATCGGGCGGTATCCCTTGTT GATAGATCGTGAAATAGTAATGATGTATGTACGCACGCACACGTGGAATG CACACACGCCACTCAGGTGTGCAATCTGGGGGAGCACCTCCAGGACGTCG AGGTGGCAGCCCTTCTTCTCGGCTCCCTGATCCACGACTTCAAGCACCCC GGGAGAAGCAACGCCTTCCTCACCAGGACAGGGCACACCTTGGCTCTCAC GTACAACGACGTCAGCGTACTCGAGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig734:31035..32062+

>mRNA_P-littoralis_Contig734.5.1 ID=mRNA_P-littoralis_Contig734.5.1|Name=mRNA_P-littoralis_Contig734.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig734:31035..32062+ (Pylaiella littoralis U1_48)
GCCGCACTTCCACAATTTTGTAGTCGAGGTGGAGCAGGGGTACGGGTCGG
GCAAGGGTGCCGGAGTCGGCAACATCTACCACAACAGACAGCACGCTGCC
GATGTCACGCAGGCGGTGCACTATTTTCTCAGAGTGTGCAATCTGGGGGA
GCACCTCCAGGACGTCGAGGTGGCAGCCCTTCTTCTCGGCTCCCTGATCC
ACGACTTCAAGCACCCCGGGAGAAGCAACGCCTTCCTCACCAGGACAGGG
CACACCTTGGCTCTCACGTACAACGACGTCAGCGTACTCGAGAA
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