mRNA_P-littoralis_Contig731.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig731.18.1
Unique NamemRNA_P-littoralis_Contig731.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig731.18.1 vs. uniprot
Match: A0A6H5JCQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ2_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 6.700e-61
Identity = 109/142 (76.76%), Postives = 119/142 (83.80%), Query Frame = 1 
Query:    1 RTMLAATPETARKRRAREQAAMSSAAAKDGTPKFRKNDQVRLAIIMMGEAMLAKTLASEQGPESIADFTHQKGAGKDVYREAARAFMNSSTSVDLPAEISTANGDPAGLVEMWQSIDAKAPAEKYCAIWTAAANAANERNRV 426
            RTM+A TPE ARK+R RE    SS+AAKD TPKF K DQVRLAIIMMG  M+  TLASEQ PES+ADFTHQKGAGK+VYREAARAFM SST+++L AEISTA+GDPA LVE WQSIDAKAPA KY AIWTAAA A NERNRV
Sbjct:   60 RTMMATTPEGARKKREREAVTTSSSAAKDATPKFMKEDQVRLAIIMMGGTMIENTLASEQSPESVADFTHQKGAGKNVYREAARAFMESSTNIELLAEISTAHGDPADLVEKWQSIDAKAPAAKYPAIWTAAAKATNERNRV 201
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BLAST of mRNA_P-littoralis_Contig731.18.1 vs. uniprot
Match: A0A6H5KJR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR2_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.800e-39
Identity = 69/87 (79.31%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:  166 LASEQGPESIADFTHQKGAGKDVYREAARAFMNSSTSVDLPAEISTANGDPAGLVEMWQSIDAKAPAEKYCAIWTAAANAANERNRV 426
            +  +Q PES+ADFTHQKGAGK+VYREAARAF+ SST+V+LPAEISTANGDPA LVE WQSIDAKAPA KY AIWTA A A NERNRV
Sbjct:    1 MKEDQSPESVADFTHQKGAGKNVYREAARAFLESSTNVELPAEISTANGDPADLVEKWQSIDAKAPAAKYSAIWTAVAKATNERNRV 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig731.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCQ2_9PHAE6.700e-6176.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJR2_9PHAE1.800e-3979.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig731contigP-littoralis_Contig731:111207..111632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size427
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791518.3141112-CDS-P-littoralis_Contig731:111206..1116261680791518.3141112-CDS-P-littoralis_Contig731:111206..111626Pylaiella littoralis U1_48CDSP-littoralis_Contig731 111207..111626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791518.3254278-UTR-P-littoralis_Contig731:111626..1116321680791518.3254278-UTR-P-littoralis_Contig731:111626..111632Pylaiella littoralis U1_48UTRP-littoralis_Contig731 111627..111632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig731.18.1prot_P-littoralis_Contig731.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig731 111207..111626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig731.18.1

>prot_P-littoralis_Contig731.18.1 ID=prot_P-littoralis_Contig731.18.1|Name=mRNA_P-littoralis_Contig731.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MLAATPETARKRRAREQAAMSSAAAKDGTPKFRKNDQVRLAIIMMGEAML
AKTLASEQGPESIADFTHQKGAGKDVYREAARAFMNSSTSVDLPAEISTA
NGDPAGLVEMWQSIDAKAPAEKYCAIWTAAANAANERNRV
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mRNA from alignment at P-littoralis_Contig731:111207..111632-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig731.18.1 ID=mRNA_P-littoralis_Contig731.18.1|Name=mRNA_P-littoralis_Contig731.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig731:111207..111632- (Pylaiella littoralis U1_48)
CGCACGATGTTGGCAGCCACCCCTGAAACCGCGCGCAAAAGACGCGCGCG
AGAGCAAGCCGCCATGTCGTCGGCTGCAGCGAAGGACGGCACGCCGAAGT
TCAGGAAAAACGACCAGGTCCGACTGGCAATTATCATGATGGGCGAAGCC
ATGCTTGCGAAAACACTCGCATCCGAGCAGGGCCCGGAGTCGATCGCAGA
CTTCACACACCAGAAGGGAGCAGGCAAAGACGTGTACCGGGAAGCCGCGC
GTGCCTTCATGAACTCGAGCACCAGCGTCGACCTCCCAGCGGAGATTTCC
ACCGCCAACGGGGACCCGGCGGGCCTCGTCGAGATGTGGCAAAGCATCGA
CGCCAAGGCGCCGGCGGAGAAGTATTGTGCGATTTGGACCGCAGCGGCGA
ATGCGGCGAACGAGAGGAACAGGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig731:111207..111632-

>mRNA_P-littoralis_Contig731.18.1 ID=mRNA_P-littoralis_Contig731.18.1|Name=mRNA_P-littoralis_Contig731.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig731:111207..111632- (Pylaiella littoralis U1_48)
ATGTTGGCAGCCACCCCTGAAACCGCGCGCAAAAGACGCGCGCGAGAGCA
AGCCGCCATGTCGTCGGCTGCAGCGAAGGACGGCACGCCGAAGTTCAGGA
AAAACGACCAGGTCCGACTGGCAATTATCATGATGGGCGAAGCCATGCTT
GCGAAAACACTCGCATCCGAGCAGGGCCCGGAGTCGATCGCAGACTTCAC
ACACCAGAAGGGAGCAGGCAAAGACGTGTACCGGGAAGCCGCGCGTGCCT
TCATGAACTCGAGCACCAGCGTCGACCTCCCAGCGGAGATTTCCACCGCC
AACGGGGACCCGGCGGGCCTCGTCGAGATGTGGCAAAGCATCGACGCCAA
GGCGCCGGCGGAGAAGTATTGTGCGATTTGGACCGCAGCGGCGAATGCGG
CGAACGAGAGGAACAGGGTG
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