mRNA_P-littoralis_Contig729.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig729.1.1
Unique NamemRNA_P-littoralis_Contig729.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.350e-44
Identity = 84/124 (67.74%), Postives = 97/124 (78.23%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
            +D +G R+EAE LVSKCLLQ +GG G+RVHDLVLEFV + I+A+ E+ E+A  LQAQYL R DV++ Y +PEHGAG QGLFFLDALWRSVEKLSGD ELEV SYR SL E ESC AT   A  Y
Sbjct:  301 EDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSY 424          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.080e-42
Identity = 81/125 (64.80%), Postives = 98/125 (78.40%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFYS 823
            +D +G RDEAE LV+KCLL  +G GG+RVHD+VLEF  + I+AD E  E+A  LQAQ+L R DV++ YR+PEHGAG++GLFFLD+LWRSVEKLSGD ELEV +YR SLRE ESC AT   A  YS
Sbjct:  518 EDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYS 642          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.360e-42
Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
            +D +G RD+AE LVSKCLL  +GGGG+RVHDLVLEF  + I+A+ E  ++A  LQAQYL R DV+EGY +PEHGAG QGLFFLDALWRSVEKLSGD ELEV SY  SL E ESC AT   A  Y
Sbjct:  560 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSY 683          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.140e-41
Identity = 81/126 (64.29%), Postives = 100/126 (79.37%), Query Frame = 2
Query:  446 SQDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFYS 823
            ++DT G R++AE LVSKCLLQD+GGGG+RVHDLVL+FV  +IKAD+E+A++   LQAQ+L R +V++ Y +PEHGAG QGLF LDALWRSVE+LSGD +LEV SY TSL   ESC AT   A  YS
Sbjct:  436 TEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYS 561          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.210e-41
Identity = 81/124 (65.32%), Postives = 94/124 (75.81%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
            +D +G RD+AE LVSKCLL  +GGGG+RVHDLVLEF  + I+A+ E  ++A  LQAQYL R DV+E Y +PEHG G+QGLFFLDALWRSVEKLSGD  LEV SYR SL E ESC AT   A  Y
Sbjct:  543 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSY 666          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.490e-36
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
            +D +G RDEAE LVSKCLL  +GGGG+RVHDLVLE+  +RI+AD E+  +   LQA +L R DV++ YR+PEHGAG Q LFFLDALWRSVEKLSGD ELEV          ESC AT   A  Y
Sbjct:  535 EDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVAL--------ESCEATEAVARSY 650          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.190e-35
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
            +D +G   EAE LVSK LL  +GGGG+R+HDLVL+F  + I+A+ E  + A  LQAQYL R DVVE Y +PEHGAG+QG+FFLDALWRSVEKLSGD +LEV SYR SL   E   AT   A  Y
Sbjct:  344 EDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSY 467          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5KFQ0_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 7.360e-27
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 3
Query:    3 VIELCGRLPLVLAIAGSMPVVKGKGLTADAWRQLTKDLENVAKKMRISGEQLTSLSVVLETSFVALAQERQEELLKMAVLAAGAVAPIEMLRNLWQTEV 299
            V+  CGR PL L +A SMP+VKGKGLTA AW +L K+LENVAKKMR  GEQ TSL +V+ETSF AL   ++EE   M+V+AAGAVAPIEML NLW  +V
Sbjct:  322 VVTRCGRPPLGLGMAVSMPIVKGKGLTAGAWTKLFKELENVAKKMRARGEQSTSLKLVIETSFDALLARKREE---MSVMAAGAVAPIEMLLNLWGIQV 417          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.570e-25
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    3 VIELCGRLPLVLAIAGSMPVVKGKGLTADAWRQLTKDLENVAKKMRISGEQLTSLSVVLETSFVALAQERQEELLKMAVLAAGAVAPIEMLRNLWQTE 296
            V++ CGRLPLVLAIAGSMPVVKGKGL   AW +L ++ ENV   M   GE+  +L +VL  SF ALA  ++EE L+MAVLA GAVAP EMLRNLW+ +
Sbjct:  440 VVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQ 537          
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.960e-23
Identity = 52/79 (65.82%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  587 VAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFYS 823
            + E+A  LQA +L   DV++ Y NPEHGA  QGLF LDALWRSVEKLSGDSELEV SY TSL E ESC AT   A  YS
Sbjct:    1 MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGDSELEVASYSTSLGELESCKATTDVASSYS 79          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5LJA6_9PHAE1.350e-4467.74NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LGG5_ECTSI1.080e-4264.80NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G722_ECTSI1.360e-4266.94NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KU94_9PHAE1.140e-4164.29NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G720_ECTSI1.210e-4165.32NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE1.490e-3660.48NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FUD7_ECTSI1.190e-3560.48NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KFQ0_9PHAE7.360e-2764.65NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LPV9_ECTSI2.570e-2561.22NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5JY23_9PHAE1.960e-2365.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig729contigP-littoralis_Contig729:4394..5216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGG5
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size824
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.91e-46
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size384
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.504702-CDS-P-littoralis_Contig729:4393..47771680791510.504702-CDS-P-littoralis_Contig729:4393..4777Pylaiella littoralis U1_48CDSP-littoralis_Contig729 4394..4777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.5229626-UTR-P-littoralis_Contig729:4777..52161680791510.5229626-UTR-P-littoralis_Contig729:4777..5216Pylaiella littoralis U1_48UTRP-littoralis_Contig729 4778..5216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig729.1.1prot_P-littoralis_Contig729.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig729 4394..4777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig729.1.1

>prot_P-littoralis_Contig729.1.1 ID=prot_P-littoralis_Contig729.1.1|Name=mRNA_P-littoralis_Contig729.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MISQDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEV
AEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDS
ELEVRSYRTSLRESESCGATFHTAEFYS
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mRNA from alignment at P-littoralis_Contig729:4394..5216-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig729.1.1 ID=mRNA_P-littoralis_Contig729.1.1|Name=mRNA_P-littoralis_Contig729.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=823bp|location=Sequence derived from alignment at P-littoralis_Contig729:4394..5216- (Pylaiella littoralis U1_48)
AGGTTATCGAACTCTGTGGGCGCCTTCCACTGGTGCTCGCCATCGCGGGT TCCATGCCCGTCGTTAAAGGGAAGGGCTTGACCGCCGATGCCTGGAGACA ACTGACCAAAGACTTGGAGAACGTGGCAAAGAAGATGCGCATTTCCGGAG AGCAGTTAACGTCGCTCAGTGTGGTCCTGGAGACAAGCTTTGTTGCTTTG GCACAAGAGAGACAGGAGGAGTTGCTGAAGATGGCTGTGCTGGCCGCAGG TGCTGTTGCGCCAATCGAGATGCTGCGTAACCTCTGGCAGACGGAGGTAC GCTGATATGCTCTGCGCGTCGTCCAGAGTCGGAAGGACTGGATGGTTTTC AACAACAAAGCAACAATCACAAATGCTCTGTTTTTTTAAGTGAAACCTCT TTTTCTTTGTGTCAAACTCGATGCACATCTGACCTGACGATGATATCGCA GGACACACAGGGCGCCCGAGACGAAGCTGAGTGTCTGGTGAGCAAGTGTT TGCTGCAAGATATGGGTGGAGGCGGGCACCGTGTCCACGACCTCGTTCTC GAGTTTGTGACAAGCAGGATCAAGGCTGACGTTGAGGTGGCGGAAGAGGC TATAATGCTGCAGGCGCAATACCTCGCCAGAGCAGACGTGGTCGAGGGCT ACCGAAACCCGGAGCATGGTGCTGGTGAACAAGGATTGTTCTTTTTGGAT GCCCTGTGGCGCTCGGTGGAGAAGCTCTCCGGGGACTCAGAACTGGAAGT TCGCTCGTACCGCACCAGCCTCAGGGAGTCGGAGTCATGCGGGGCGACTT TCCACACGGCAGAGTTCTACTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig729:4394..5216-

>mRNA_P-littoralis_Contig729.1.1 ID=mRNA_P-littoralis_Contig729.1.1|Name=mRNA_P-littoralis_Contig729.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig729:4394..5216- (Pylaiella littoralis U1_48)
ATGATATCGCAGGACACACAGGGCGCCCGAGACGAAGCTGAGTGTCTGGT
GAGCAAGTGTTTGCTGCAAGATATGGGTGGAGGCGGGCACCGTGTCCACG
ACCTCGTTCTCGAGTTTGTGACAAGCAGGATCAAGGCTGACGTTGAGGTG
GCGGAAGAGGCTATAATGCTGCAGGCGCAATACCTCGCCAGAGCAGACGT
GGTCGAGGGCTACCGAAACCCGGAGCATGGTGCTGGTGAACAAGGATTGT
TCTTTTTGGATGCCCTGTGGCGCTCGGTGGAGAAGCTCTCCGGGGACTCA
GAACTGGAAGTTCGCTCGTACCGCACCAGCCTCAGGGAGTCGGAGTCATG
CGGGGCGACTTTCCACACGGCAGAGTTCTACTCG
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