mRNA_P-littoralis_Contig727.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.71.1
Unique NamemRNA_P-littoralis_Contig727.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:136445..139508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791508.0781674-CDS-P-littoralis_Contig727:136446..1365271680791508.0781674-CDS-P-littoralis_Contig727:136446..136527Pylaiella littoralis U1_48CDSP-littoralis_Contig727 136447..136527 -
1680791508.0902011-CDS-P-littoralis_Contig727:139427..1395081680791508.0902011-CDS-P-littoralis_Contig727:139427..139508Pylaiella littoralis U1_48CDSP-littoralis_Contig727 139428..139508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.71.1prot_P-littoralis_Contig727.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 136447..139508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.71.1

>prot_P-littoralis_Contig727.71.1 ID=prot_P-littoralis_Contig727.71.1|Name=mRNA_P-littoralis_Contig727.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
FLKARGELVGQYMPDKAVIRLYDKGKSTVNLDRQVLMDIKYRALRAVSGR
KHLR
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mRNA from alignment at P-littoralis_Contig727:136445..139508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.71.1 ID=mRNA_P-littoralis_Contig727.71.1|Name=mRNA_P-littoralis_Contig727.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3064bp|location=Sequence derived from alignment at P-littoralis_Contig727:136445..139508- (Pylaiella littoralis U1_48)
TTTCTGAAGGCACGAGGCGAACTAGTTGGTCAGTACATGCCAGACAAGGC
GGTCATCCGACTGTACGACAAGGGCAAGTCGGTAAGAAGCTCGTTTCGGT
TTCGTCAAAGTGCATACTATACCGTGTGAAATGAATTTGGCATTTTTATA
AGAGCGGTGAGCAAAGCGCATCTCCCGTACGTAAGTAAATCTTTTCCTGG
CATCACGACTACCTACCCAACCTTTACCTACGCCCCCCCAACCCGAGGGG
GGGGGGGGGAGCAACCTAACGTAACACAACGGAGTCAACGCAACTTAACC
TAACCCCACCCAAACAATGTCAACCAAATCCCCCGCCTACGCTTGCCTGG
CCACAGAGGGCTCGAGTCACATCCGACGATTAGAGGGGGCGGGTTCCACA
CGGGCGCGGTCATAAAACCGATATTCTCGGTATTCTGCTGTTCGTATCCC
TAGCGACATTTTTGCATTTTAGTTGAGATATATGTCCCTGACATGGGCGA
GACCCTCCCCCTACCCGCTAGAGTAGATATCTGGGAATCGAGGATGACCG
GCATTCACGGAACCCCCCTTTTTTTGGGAGAATCGATTGTTTTCGGGAAA
AGCAGGGAGTGTTGCTTGCTGCCGAAAGAGCACGCCCAAAAACACGCACC
GACCCATCCTCGTACTACCCCTCGACCCCAACCGGATCCATTCTGTCACT
CCCACCCGGCGAACGCTCACAACCCGGCTGTGTTCTATAGTTTGATGTTA
GAGTAGCAGCAGTAAACGCCAGCATTTGTTCCAGGAAGAGGACGGGAGAG
GGCTGTGGGTGCTTTGCCTATCGTTAGGGGTTCAATGCTGGTGGTTGTTT
CTGCATACAGCAGTAGTACAGCAGTGTAGTATGAAGTACGATCAGTACTG
CTGACTCCACGACGAGTAGGTAGGTGACCACACACAGCAGTACCAGGACG
AGAAGGCCACTCCACCCAACCAAATGCAACCTAAAACCCCTGCCCAACCC
CCTCCCGGCAACCCAACCCAACCAAACACGACCCAAAACCCTACACAACC
CAACTCAAATACAAACACCAACCCAACCATACGGTACCCCTCCCAACCCC
CCCCAAAGGGGGGGGCGCAACCCTACCCTACCCAACCAAACTAACCAACC
CCGCCAAACACAACCCAACTCAACCCAACATCTTCCAACCCCCCCCCCAC
AGGGGCCCCTTGGTGGAATGTTTTTTCACTAATTGATTTGTGTTTTATTT
TAACTCAGAAAAATTGTTTGCAGTGCACTCGCGCGATTCAGTGGTTTATT
GAGGCCTAGCTCCGATTCGTTTTGTTGAAATCAGGGCGTCTACGACATGG
AACCCTAACCCCTACCAGAAGCTTTCGTGAAGAAAAAGCTACTTTGCTTG
ATCAAGCGGGAACTCTGCAACTTAAAAGATCCTCCCAAACCCTGCTATAT
TTAGATGCCGAAGGAAGGAAAAATTGCCCTTTGTTTCACACTTGTAAAGC
TATATCGCCCATTTCTCGGAATGTTTGGGATTAAGAGCCTAATATTGGCT
ACGATCATGCAAGGTCTCGATTTTTTATGACGTGTCTAGGGGGGCACGCG
ACCCAACCCAACCCGCCAACCGTACGGTATCCCCCCCAACCCCCTCAACC
CCCCCCAGAGGGGAGGGCGCAACCCTACACAACTCAACCCAACCCAACCC
TCCCCAACCCAGCCCTACCCAATCGAATCAAACCCAACCAAACGGTACCC
CTCCCAATCCCCCCACCCAACCCAGCCCAACACAACCCCACACAACACAA
CACAACACAACACAGCCCAACCGTACGGTACCCCCCCCAAGCCCCCGAGG
GGGGGGCGCAACCCTACCCTACCCAACCCAATCGTGGGGGGGGGAGGCGC
AACCCTACCCTTCCCAACACAATCATGGCGAGGGGCGTAATCCTACCAAC
CCAACCCAACCGTACGGTACCCCCCCCAACCCTCCCCAGAGGGGGGGGGG
GCGCAACCCGACACAACCCAACCCAACCCAACCGTACGGTATCCCCCCCA
GCCTCCCCCATAGGGGGGGGCGCAACCATACCGTACTCCCCCCCAACCCC
CTCCCGAGGGGGGGGCGCAACCCAAGACAACCAAACACAACCCAAAACCC
TACACAACCCAACTCAATTGAAAACACCACACAACCAAACACAACCCAAA
ACCCTACACAACCCAACTCAATTGAAAACACCACCCAACCAAACACAACC
CAAAACCCTACACAACCCAACTCAATTATAAACACCACCCCAACCCAACC
ATACGGTTCCCCTCCCAACCCCCCGGGCGCAACCCTACCCTACCCAACCA
AACCAACCAACCCAACGAAACACAACCCAACTCAACCCAACACCTCACCA
ACCCTCCCCCCCCGACAGGGGCCCCGTGGTGGAATATTTTTTCACAAATA
GTTTTGTGTTATTTTTTGACTCAGAAAAATTGTTTGCAGTGCACTCGCGT
GATTCAGTGGTTTAATGAGGCCTAGCTCCGATTCGTTTTGTTGAAATCAG
GGCGTCTACGACATGTACCTGACCGAACAGAAGGGGCTACATGGCAACAT
TTCCGGAGCCTGCAGCGCCTCGCACTTCAACAGGATTTGGAGGGAAGAAT
GCCAGTTTCTGAAGCTCACACAAGGGAGAGACTTTATGCTCTGCAATGTT
TGTACGCTAGCGAACCAAACCCTTCATGGAACACCCGGGGGAGAGGCTAC
GACTGACTCGTCGATCAGAGAGTCGACAGAAGCGGCTCTCGCTACACATC
TAAAGGTAAATAGTCACCCGTTCAACCCAGGCAAAAAAAGATAATTAAAG
ACAACAAATACTAAATTGTCACGTCGAGTTCATGCGTCATCGTCCTCTGA
TAATAACCTCCGGCGCAACCTGCGTGAAGAAACGTGTGCTTTGTCCGATG
ACAAACCGTTCTGTCCCCTGCAACACTGCAGACCGTCAATCTTGATCGCC
AGGTACTGATGGACATCAAGTATCGTGCCCTTCGCGCGGTTTCCGGAAGA
AAACATTTGCGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:136445..139508-

>mRNA_P-littoralis_Contig727.71.1 ID=mRNA_P-littoralis_Contig727.71.1|Name=mRNA_P-littoralis_Contig727.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig727:136445..139508- (Pylaiella littoralis U1_48)
TTTCTGAAGGCACGAGGCGAACTAGTTGGTCAGTACATGCCAGACAAGGC
GGTCATCCGACTGTACGACAAGGGCAAGTCGACCGTCAATCTTGATCGCC
AGGTACTGATGGACATCAAGTATCGTGCCCTTCGCGCGGTTTCCGGAAGA
AAACATTTGCGT
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