mRNA_P-littoralis_Contig727.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.31.1
Unique NamemRNA_P-littoralis_Contig727.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:84394..84656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size246
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.804193-UTR-P-littoralis_Contig727:84393..844211680791507.804193-UTR-P-littoralis_Contig727:84393..84421Pylaiella littoralis U1_48UTRP-littoralis_Contig727 84394..84421 -
1680791507.8401084-UTR-P-littoralis_Contig727:84561..846561680791507.8401084-UTR-P-littoralis_Contig727:84561..84656Pylaiella littoralis U1_48UTRP-littoralis_Contig727 84562..84656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.8161142-CDS-P-littoralis_Contig727:84421..844771680791507.8161142-CDS-P-littoralis_Contig727:84421..84477Pylaiella littoralis U1_48CDSP-littoralis_Contig727 84422..84477 -
1680791507.8263848-CDS-P-littoralis_Contig727:84494..845611680791507.8263848-CDS-P-littoralis_Contig727:84494..84561Pylaiella littoralis U1_48CDSP-littoralis_Contig727 84495..84561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.31.1prot_P-littoralis_Contig727.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 84422..84561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.31.1

>prot_P-littoralis_Contig727.31.1 ID=prot_P-littoralis_Contig727.31.1|Name=mRNA_P-littoralis_Contig727.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=41bp
MFSRASAYKEEVRKTRNPFQEPQPREFALHVCGEYLGATA*
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mRNA from alignment at P-littoralis_Contig727:84394..84656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.31.1 ID=mRNA_P-littoralis_Contig727.31.1|Name=mRNA_P-littoralis_Contig727.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=263bp|location=Sequence derived from alignment at P-littoralis_Contig727:84394..84656- (Pylaiella littoralis U1_48)
TATGAGGCTGTTTAAGGTATCCATGAGCGAGCAGCACCCTAGGCATATGG
ATACAGTCGTTGGATAGTAACGGCCCTGGCCTAAACAATCAACTCATGTT
TTCGAGGGCGAGTGCGTACAAAGAAGAAGTACGGAAGACACGGAATCCTT
TCCAAGAGCCCCTAGGCATGGGAAAAGGGAACCAAGGGAATTTGCCTTGC
ACGTATGTGGTGAATACTTGGGCGCGACAGCATGAAGGGCGCCGATAGAA
GTAATATAATTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:84394..84656-

>mRNA_P-littoralis_Contig727.31.1 ID=mRNA_P-littoralis_Contig727.31.1|Name=mRNA_P-littoralis_Contig727.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=123bp|location=Sequence derived from alignment at P-littoralis_Contig727:84394..84656- (Pylaiella littoralis U1_48)
ATGTTTTCGAGGGCGAGTGCGTACAAAGAAGAAGTACGGAAGACACGGAA
TCCTTTCCAAGAGCCCCAACCAAGGGAATTTGCCTTGCACGTATGTGGTG
AATACTTGGGCGCGACAGCATGA
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