mRNA_P-littoralis_Contig726.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig726.23.1
Unique NamemRNA_P-littoralis_Contig726.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 2.340e-82
Identity = 166/273 (60.81%), Postives = 189/273 (69.23%), Query Frame = 2
Query:  308 RGTAVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSSKRPRMMDFTPRAK-EPRFASYGRGGPRRSTED-GEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAN-DIGV 1117
            R  +VLLTPSY +  +L    LT AD QHL   K HLAPT +T+ + K N  WA+IKA A +AA K +S A ++  GGQ   KR      TP  K  PRFAS  R   R  TED GEG    DSE++ L   V  E+ER+ ALY+ A+ELDTR++LPWWR TGRKMFP LAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KD PMIA KDIR CLP +F G  DADL AAEA  DV+ NT N DIGV
Sbjct:  358 RNASVLLTPSYKDTNFLQAHALTAADSQHLDQRKAHLAPTIDTEVDQKLNDCWADIKARASEAARKKHS-ARATAEGGQPPLKRL----STPATKARPRFASLARNRVRGDTEDVGEG----DSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG-DADLAAAEATFDVIENTNNSDIGV 620          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 2.610e-76
Identity = 146/273 (53.48%), Postives = 187/273 (68.50%), Query Frame = 2
Query:  308 RGTAVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSSKRPRMMDFTPRA-KEPRFASYGRGGPRRSTEDGEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTA----NDI 1111
            R  AVLLTP +N   YL  L L+ AD ++L   KK LAPT +++  AK +  WA+IK  A +AA + N R+ S   G Q   KR R    T  A ++ RF+ +GRG  R ST+D   +  EDSE+++L  +V  E+E Y +L+I+ADELD R++LPWW+ TG+ +FP+LAPVAQQVFGNQA  +QVERDFS  G LL PNRSR+DTYWVE++MFL  N+ HIP LK  PM+A K+IR CLPA+F G RDADL AAEA  DV+ NTA    NDI
Sbjct:   42 RDAAVLLTPPFNTGKYLEALRLSAADAEYLSIGKKGLAPTMDSEVTAKLDGCWADIKRRAWEAARERNRRSESLDDGVQPLHKRFRGESSTSSATRKSRFSLFGRGDARSSTDD---MADEDSEDRKLGEVVAGELEHYKSLFIKADELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARFHG-RDADLMAAEAIFDVLMNTAPPSVNDI 310          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 6.980e-62
Identity = 105/137 (76.64%), Postives = 115/137 (83.94%), Query Frame = 2
Query:  710 IERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAN-DIGV 1117
            I+R+ ALY+ A+ELDTR++LPWWR TGRKMFPYLAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KD PMIA KDIR CLP +F G  DADL AAEAA DV+ NT N DIGV
Sbjct:   87 IDRFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG-DADLAAAEAAFDVIENTNNSDIGV 222          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.530e-61
Identity = 101/138 (73.19%), Postives = 112/138 (81.16%), Query Frame = 2
Query:  686 LSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNT 1099
            L   V  EIERY++LYI A+ELDTR+ILPWWR+TGRK FPYLAPVAQQVFGNQAGAAQVERDFS C NLL  NRSR+DTYWVEM+MFL  N++HIP  KD PMIA KDI  CLP +F G  DADL AAEAA DV+ NT
Sbjct:    4 LMQHVSQEIERYHSLYITAEELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNGG-DADLAAAEAAFDVIKNT 140          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 6.030e-45
Identity = 115/265 (43.40%), Postives = 153/265 (57.74%), Query Frame = 2
Query:  317 AVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSSKRPRMMDFTPRAKE---PRFASYGR--GGPRRSTEDGEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNN 1096
            A LLTP ++   ++  + L   D+++LP++    APT + +  AK +  W EIK  AV+A +K    AASSG G     KR R      R +      FA++GR  GG   S + G+ V+ E          V  EI RY  +++ +++L   ++L +W  TGR  FP L  VAQQ FG+Q  AA VERDFS CG  LVPNRSR++ YWVEM+MFL  N+K IP   + P I  KDIRKCLPAKF G  D DL +AE ALD + N
Sbjct:  590 ACLLTPPFSEGLHVAAMKLAAGDDEYLPSTSTATAPTMDEEVTAKLDETWKEIKERAVEA-VKKEQAAASSGPGAAGVFKRARTAGXXXRRRPVDGDEFAAFGRSVGGVEESKQ-GDAVEQE----------VANEIMRYKGVFMTSNDLHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKFKGT-DEDLLSAEMALDPLRN 841          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.170e-44
Identity = 84/108 (77.78%), Postives = 88/108 (81.48%), Query Frame = 2
Query:  797 MFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAN-DIGV 1117
            MFPYLAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KD PMIA KDIR CLP +F G  DADL AAEAA DV+ N  N DIGV
Sbjct:    1 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG-DADLAAAEAAFDVIENINNSDIGV 107          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.240e-39
Identity = 105/246 (42.68%), Postives = 137/246 (55.69%), Query Frame = 2
Query:  317 AVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSS--KRPRMMDFTPRAK---EPRFASYGRGGPRRSTEDGEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFT 1039
            A LLTP ++   YL  + LT  ++ +L A    +APT++ D   K    WAEIK  AV A     +R A  G GGQ S   KR R     P  +   E  F+ +G      S  DG  VD  + E       V  EI RY  ++++  +L   D+L +W + G++MFP L  VAQQ FG+QA AAQ+ERDFS CG     NRSR + YW+EM+M LK NY+ IP  KD P I  KDIRKCLPAK++
Sbjct:  346 ACLLTPPFSEGNYLSAMKLTAEEDDNLAAVSTVVAPTSDEDVREKLEGIWAEIKKRAVTAVKTEQNRVAGEG-GGQGSDPFKRARTSGAVPSRRKNYEDDFSMFGCNEVAPSQSDGGDVDFVEEE-------VSGEIIRYKGVFMKPIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRKCLPAKYS 583          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.120e-37
Identity = 95/173 (54.91%), Postives = 107/173 (61.85%), Query Frame = 2
Query:  605 ASYGRGGPRRSTED-GEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAN-DIGV 1117
            +S G+   R  T+D GEG    DSE++ L   V  E+ER+ ALY+ A E                           V GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KD PMIA KDIR CLP +F G  DADL AAEAA DV+ NT N DIGV
Sbjct:  183 SSLGKNRVRGDTKDVGEG----DSEDKVLMQQVSQELERFQALYMTAGE---------------------------VLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKCIPAFKDIPMIAAKDIRTCLPPRFNGG-DADLAAAEAAFDVIENTNNSDIGV 323          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.160e-37
Identity = 105/266 (39.47%), Postives = 145/266 (54.51%), Query Frame = 2
Query:  314 TAVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSS--KRPRMM---DFTPRAKEPRFASYGRGGPRRSTEDGEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNN 1096
            ++ LLTP Y++  ++  + LT  +  +LP     L PTT+ D E K    W  IK  A++A  +  ++A  SG GG  +   KR R          A E  FA     G    +  G+  D          L V  EI+R  AL + + +L  RD+L +W+++GR  FP L  VAQQ FG+QA AAQ+ERDFS  G L   NR+R+D YWVEM++FLK N++ IP   D P +  K IR+CLPAKF G  +  L+A E ALD + N
Sbjct:  242 SSCLLTPPYSSGIHISAMKLTEEEGDYLPTGLTVLTPTTDEDVEDKKAEAWGMIKKRAIQAVKEDQAQANGSGDGGGDAGPFKRARTSGNGSARNDAGEDHFAVLCTAGAVEQSGSGDDGD----------LSVAGEIQRSRALQMNSSDLQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKFKGTNEYLLDA-EMALDPLEN 496          
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.470e-33
Identity = 100/264 (37.88%), Postives = 131/264 (49.62%), Query Frame = 2
Query:  317 AVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSSKRPRMMDFTPRAKEPRFASYGRGGP--RRSTEDGEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTA 1102
            A LLTP ++   ++  + LT  D  +LP S   +APT + +  AK +  W EI+  AV++      RA  S +GG                          GGP  R  T  G    +    ++       A +E       R       ++L +W  TG+  FP L  VAQQ FGNQA AA VERDFS CG  +VPNRSR+D YWVEM+MFLK N+     + + P I  KDIRKCLPAKF G  +  LNA E AL  ++N A
Sbjct:  268 ACLLTPPFSEGRHVSAMRLTAEDAMYLPNSSNIIAPTADFEVTAKLDWAWTEIRKRAVESVKTEQDRAGGSDAGGG-------------------------GGPFKRAHTSGGRSARNPTDPDEFTDSGRTAAVEEAR----RMTSCSRSEVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRI-NIPQIDPKDIRKCLPAKFEGTDEDHLNA-EMALYPLSNDA 500          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig726.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KZ46_9PHAE2.340e-8260.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE2.610e-7653.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE6.980e-6276.64Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KSA7_9PHAE2.530e-6173.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE6.030e-4543.40Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE1.170e-4477.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE1.240e-3942.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM2_9PHAE1.120e-3754.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE6.160e-3739.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE1.470e-3337.88Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig726contigP-littoralis_Contig726:128679..130686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size1723
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.31e-06
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size762
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.5245998-UTR-P-littoralis_Contig726:128678..1292811680791507.5245998-UTR-P-littoralis_Contig726:128678..129281Pylaiella littoralis U1_48UTRP-littoralis_Contig726 128679..129281 -
1680791507.563753-UTR-P-littoralis_Contig726:130328..1306861680791507.563753-UTR-P-littoralis_Contig726:130328..130686Pylaiella littoralis U1_48UTRP-littoralis_Contig726 130329..130686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.5426059-CDS-P-littoralis_Contig726:129281..1296531680791507.5426059-CDS-P-littoralis_Contig726:129281..129653Pylaiella littoralis U1_48CDSP-littoralis_Contig726 129282..129653 -
1680791507.5535939-CDS-P-littoralis_Contig726:129938..1303281680791507.5535939-CDS-P-littoralis_Contig726:129938..130328Pylaiella littoralis U1_48CDSP-littoralis_Contig726 129939..130328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig726.23.1prot_P-littoralis_Contig726.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig726 129282..130328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig726.23.1

>prot_P-littoralis_Contig726.23.1 ID=prot_P-littoralis_Contig726.23.1|Name=mRNA_P-littoralis_Contig726.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=254bp
MDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKA
NSRAASSGSGGQSSSKRPRMMDFTPRAKEPRFASYGRGGPRRSTEDGEGV
DSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPY
LAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVN
YKHIPALKDTPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAND
IGV*
back to top

mRNA from alignment at P-littoralis_Contig726:128679..130686-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig726.23.1 ID=mRNA_P-littoralis_Contig726.23.1|Name=mRNA_P-littoralis_Contig726.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2008bp|location=Sequence derived from alignment at P-littoralis_Contig726:128679..130686- (Pylaiella littoralis U1_48)
AATTACCCGCGGTACGGGTAAACATTTGTGGAACTACCCTCCACATTTGT GATTACCCCGGGATGCTGACGTCAGTCCAACTTGAAGAATACCCTCAAAA AACACCACACAACACACAGAGCAAGACCCTCCTTCAGCAGAGAAACAGAA CACATCTGGTACATACAGCAGAACAAACACACCGTACGACACGCGGTATC GGGTTCAGCGGGAGCATGAGCGATGCAGACCTCAGCGGTAATACGCCAGA GCCCGCGGGCGATGTTCAGGTGGAGGCAGGTGCAGGCGCAGGCCCAGGTG GCGCCGGCGAGGAACCGCCGTGCTTCTCACCCCGTCATACAACAACAAAG GCTACTTGATGGACCTCGGACTCACGTTGGCCGACGAGCAGCACCTCCCC GCCAGTAAGAAGCACTTGGCTCCTACGACCGAGACAGACGCGGAAGCAAA GTACAACAGGCGCTGGGCGGAGATCAAAGCTTGGGCTGTGAAGGCCGCGC TCAAGGCAAACTCGCGCGCTGCATCAAGCGGCAGCGGCGGTCAATCGTCT TCCAAGCGCCCCCGCATGATGGACTTCACCCCTCGCGCCAAGGAGCCTAG GTTTGCATCGTACGGGCGAGGCGGGCCCCGCCGCAGCACTGAAGACGGGG AGGGCGTCGACAGTGAGGACAGTGAGGAGCAGCAGTTGTCCCTGCTAGTG GACGCAGAGATCGAGCGGTACAACGCACTGTACATCAGAGCAGACGAGGT ATGCAGTGTTGAAAATGGGTGTGCTGAGGAAGAGAAACCAAAAATGCAAG GGCGATGTGGGGCGCATGTGTTGCATACAATAGGTCTAGACGCGATTGAT TGTTGTTTTTGTCTGTTGATGTGTTACCTTGTCGGTGCAGATCTGTTTTG TTTTGCCTCGTATCCTCGTATGCCATCATTCTACTTTCTGTGCGCAGCAT TTTCATTTTGGTATAAAACGTTAATCTATTTGTATTTGTATTTTTATTTT CGTTGCCCTATGCCTCATGTTTCTTTTTTGCAGTTGGACACTCGGGACAT ACTTCCTTGGTGGCGGGAGACCGGCCGGAAGATGTTCCCCTACCTCGCAC CCGTGGCGCAGCAGGTGTTCGGGAATCAGGCCGGTGCGGCGCAGGTTGAG CGCGACTTCAGTGCTTGCGGTAACCTACTCGTGCCCAACAGGAGCCGCAT CGACACCTACTGGGTGGAGATGCTGATGTTCCTCAAGGTCAACTACAAGC ACATCCCCGCGTTGAAGGACACTCCCATGATCGCCGATAAGGACATCCGC AAGTGTCTGCCGGCAAAGTTCACCGGCGCGAGGGACGCTGACCTGAACGC CGCTGAGGCCGCCTTGGACGTGGTGAACAACACCGCGAACGACATTGGCG TGTAGACTGACTGTCGGGGGGGTTGTTCAGGAGAGACCCCTCTTTGCTTC TCGCTACTGCTGTTGTGTTGGGAAAAAGTCGGATGGGAACGGAGTTTGCC CCTTGCCTGCTGGCGAGGAGTAGTCGTGGGGGCGCACCACGAAATCCTAA TCCTTTGCACTCAGGTTCCTAGCAACGTGAAGTTTTCAGTCTTGATCTTT TTTTCGTCGTGCAGGTTTTTCCCCTCTGGGAAGTGGAGAGGGTAGATGAA AACGTAACAAAGTCTAAACGTGAAATGCTTTTTTTTTATGTTCCATGTTT TTTTTTTAGCAGTAGTCCTCCGCTGTCACCTGGGAAGTTGAGGACTGGGA TACATAGGGGCCGTACGCAAGCACGCTTCATCTTTTCAAGTCTTGGTTTA GTACCTTGAAACCGAGTCGAACCAAGGCAAACAGCAGTGTGCAAATACAG AGACTCGCGCGGGTACCGAGGGTAATGACCGTCTGTAGTTACCCTACAGA TACCCTACAGAGCCTACCCTGTGAGTTCTGTGACGGTTGCACCACAGTAC CCTACACTTCTGTGAGTTCTGTAGCACACACGGTACCCCACAGATTACCC TCTTGGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig726:128679..130686-

>mRNA_P-littoralis_Contig726.23.1 ID=mRNA_P-littoralis_Contig726.23.1|Name=mRNA_P-littoralis_Contig726.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=762bp|location=Sequence derived from alignment at P-littoralis_Contig726:128679..130686- (Pylaiella littoralis U1_48)
ATGGACCTCGGACTCACGTTGGCCGACGAGCAGCACCTCCCCGCCAGTAA
GAAGCACTTGGCTCCTACGACCGAGACAGACGCGGAAGCAAAGTACAACA
GGCGCTGGGCGGAGATCAAAGCTTGGGCTGTGAAGGCCGCGCTCAAGGCA
AACTCGCGCGCTGCATCAAGCGGCAGCGGCGGTCAATCGTCTTCCAAGCG
CCCCCGCATGATGGACTTCACCCCTCGCGCCAAGGAGCCTAGGTTTGCAT
CGTACGGGCGAGGCGGGCCCCGCCGCAGCACTGAAGACGGGGAGGGCGTC
GACAGTGAGGACAGTGAGGAGCAGCAGTTGTCCCTGCTAGTGGACGCAGA
GATCGAGCGGTACAACGCACTGTACATCAGAGCAGACGAGTTGGACACTC
GGGACATACTTCCTTGGTGGCGGGAGACCGGCCGGAAGATGTTCCCCTAC
CTCGCACCCGTGGCGCAGCAGGTGTTCGGGAATCAGGCCGGTGCGGCGCA
GGTTGAGCGCGACTTCAGTGCTTGCGGTAACCTACTCGTGCCCAACAGGA
GCCGCATCGACACCTACTGGGTGGAGATGCTGATGTTCCTCAAGGTCAAC
TACAAGCACATCCCCGCGTTGAAGGACACTCCCATGATCGCCGATAAGGA
CATCCGCAAGTGTCTGCCGGCAAAGTTCACCGGCGCGAGGGACGCTGACC
TGAACGCCGCTGAGGCCGCCTTGGACGTGGTGAACAACACCGCGAACGAC
ATTGGCGTGTAG
back to top