mRNA_P-littoralis_Contig726.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig726.19.1
Unique NamemRNA_P-littoralis_Contig726.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.040e-40
Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:   13 LVRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQV 267
            LVR VFP++TRDVAGR CVPLELK  VLGVLQVLGRGNCFADVA  SLMS+ TAEKSFHRFCDCF+ GLWHQWV LPEG+ LK+V
Sbjct:   89 LVRTVFPTATRDVAGRQCVPLELK--VLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKV 171
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.200e-38
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:   13 LVRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQVES 273
            +VRPVFP+   DV GR CVPLELK  VLGVLQVLGRGNCFADVANFSLMS++TAE+SFHRFC CFA GLW  W+RLPEG+ L++VES
Sbjct:  187 MVRPVFPAREHDVCGRLCVPLELK--VLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVES 271
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5KJD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.820e-31
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:   16 VRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQVES 273
            V  +FPSS RD AGR C P+ELK  VLG L+VL  G CF DVA+FSLMS++TAE SFH FC+ F+ GLW  WV+LP GD+LK+VE 
Sbjct:   36 VASIFPSSARDFAGRDCPPVELK--VLGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCENFSEGLWDTWVKLPRGDELKKVEE 119
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.870e-30
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:   88 QVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQVES 273
            QVLGVLQ LGRGNCFADVANFSLMS++TAE+SFHRFC CFA GLW  W+RLPEG+DL++VES
Sbjct:    5 QVLGVLQALGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVES 66
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5KHV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.470e-29
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:   16 VRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQVES 273
            V  +F SS RDVAGR C P+ELK  V+G L+VL  G CF DVA+FSLMS++TAE SFH FC+ F+ GLW  WV LP GD+ K+VE 
Sbjct:    4 VTSIFQSSARDVAGRDCPPVELK--VMGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCEKFSEGLWDTWVNLPGGDEFKKVEE 87
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5KGV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.560e-28
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   16 VRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQVES 273
            V  +F SS RDVAGR C P+ELK  V+G L+VL  G CF DVA+FSLMS++TAE SFH FC+ F+ GLW  WV+LP GD+ K+VE 
Sbjct:  115 VTSIFQSSARDVAGRDCPPVELK--VMGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCEKFSEGLWDTWVKLPGGDEFKKVEE 198
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5K8G0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.960e-28
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   25 VFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQV 267
            + PSS    A R     + +  VLGVLQVLGRGNCFADVA  SLMS+ TAEKSFHRFCDCF+ GLWHQWV LPEG+ LK+V
Sbjct:   83 LVPSSREAKAFRS----DFQGSVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKV 159
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5KBC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.000e-23
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:   13 LVRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQVE 270
            +V P FP++  DVAGR CVP+ELK  V   L++L   + F +VA FS MS +TAEKSFH FC+ F+  LW  WV+LP GD+LK+VE
Sbjct:   49 VVAPAFPAAAHDVAGRECVPVELK--VCAALKLLV-SDSFQNVATFSGMSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVE 131
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BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5L2S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.010e-17
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:   37 STRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQVES 273
            S   +  R C+P    KQ    L+VL  G CF DVA+FSL S++TAE SFH FC+ F+ GLW  WV+L  GD LK+VE 
Sbjct:    2 SEPQLGRRVCIPFA--KQGCDALEVLASGCCFQDVASFSLTSRTTAETSFHHFCEKFSEGLWDTWVKLLRGDSLKKVEE 78
[Close]
BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.040e-17
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   19 RPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQV 267
            R  FP+   DV GR  VP+ELK  VL  LQ+L RGN FAD+ + S +S  T   +FHRFC  FA  L+ ++V LP G+DL++V
Sbjct:  153 RDWFPTGESDVTGRQAVPVELK--VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKV 233
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig726.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE3.040e-4081.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE2.200e-3875.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJD5_9PHAE7.820e-3162.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE2.870e-3080.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHV5_9PHAE1.470e-2960.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGV3_9PHAE1.560e-2860.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8G0_9PHAE3.960e-2866.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KBC8_9PHAE3.000e-2354.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2S9_9PHAE1.010e-1750.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE6.040e-1749.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig726contigP-littoralis_Contig726:125169..127481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size275
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.4824257-CDS-P-littoralis_Contig726:125168..1252521680791507.4824257-CDS-P-littoralis_Contig726:125168..125252Pylaiella littoralis U1_48CDSP-littoralis_Contig726 125169..125252 +
1680791507.492479-CDS-P-littoralis_Contig726:127290..1274791680791507.492479-CDS-P-littoralis_Contig726:127290..127479Pylaiella littoralis U1_48CDSP-littoralis_Contig726 127291..127479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig726.19.1prot_P-littoralis_Contig726.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig726 125169..127479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig726.19.1

>prot_P-littoralis_Contig726.19.1 ID=prot_P-littoralis_Contig726.19.1|Name=mRNA_P-littoralis_Contig726.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
FVCGLVRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANF
SLMSQSTAEKSFHRFCDCFAGGLWHQWVRLPEGDDLKQVES
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mRNA from alignment at P-littoralis_Contig726:125169..127481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig726.19.1 ID=mRNA_P-littoralis_Contig726.19.1|Name=mRNA_P-littoralis_Contig726.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2313bp|location=Sequence derived from alignment at P-littoralis_Contig726:125169..127481+ (Pylaiella littoralis U1_48)
TTCGTTTGTGGACTGGTGAGGCCGGTCTTCCCATCTTCTACAAGAGACGT
CGCTGGGCGTCCCTGCGTCCCCTTGGAGTTGAAGGTGGGTGCGATTGAGA
CTGAAGCTTTGTCATGTTGGACTCGGCAGTCTCTTCTCCATGTGAATGCG
TTGGTGTGGATGTGTGTTCAAGGTCATGTCGCACATGGGAATACAGCAGT
ACAGCATATTACCAGGTACCGGTATGTATCATATGATGATAAATCGTATA
CCGCTACAAACTAATGATACGTGTGCAGACTGGGAAACCGCTCCGCATCA
ACAACAGCGCTACGATCTCTTTTCACAGCACTCCCTACAGCAGGTCCTGG
TGTCGCGTTGAAAAATGGTACGCTACAGCAGTACCGTAGTATATTGCTGT
ACTCGTAGCACTCGCGCCCACAGAAAAAACAGCACCATTATATGCGAATG
TATGCGTACGTACGTAGTACTTCGAAGTACGTAAACAGCAGTCCACGCCA
CAGAGACATGTTGTAGTGTCCCGGCCAAGGACTGCGTGTCAACAGCAGTA
CACCTCTACCACAGTTGTCCCCGTTATTATCCACAGGCCTCGGTCTGCGG
AAGTGCGTGTGGGATCGAATTCGACGCGTAGCACCGCTGTAGACGCGCAG
TCTATCAGACGTACATGATACTTCGAAGTATGAAAAATACAGCATACAGC
AGTACGACGTTTGTACGAGTACGTGATACGCTGAGCGCAAGGAGGCATGT
TTTTTTCCATCGGCTGCGTGTCGAAGCACAAGCTCGTGCCACTTTTTCTC
CTCGTACTCATCGACGGACACCAGTCTGCTGAAGGGCGCGAGCTTGTATT
TTGGTTAAGCTACTGCTGTAAACGTGAACACGCAGTGGATGACACCGGAG
ATTAGGTTTGCGCCAGCTACTTCTGTAGACACGATACCAGCAGTGGTAGA
TGCTCGTATGCCCGTATAAAATCTAGTCGTACTGACTATGGTAGCGTTTT
TCTGTTGAAATATAACCTCTGGATGAGGTGCAATCAAATGTTGCCGTCTT
CGCAGCCAGCGTACCGTAATTGTGCGGGTCATCGCACCGGGTGCGATCGC
GATTTTAAATGTTTCTTTCTTTATTTTTTTATCGCACCCCGGTGCGATAA
CCCCGATGGGTGCGATAACCCCGGCAGGGGTGCGATAATACAATTAAATG
TTTCGTTCTTGGTGGTTTTTGCGCATCCCGGTGCGATGACCCCGATGGGT
GCGGAGCTGAATCAAATATTCCGGCCCTACTGGGGCATGGGTGCTACACA
CATGCACCCCGGTGCGATAACCCCGATGGGTGCGATACTGAATACCACCA
CAGCGGCTCACTGGCCCCCAGCTACCACCCGCTCTGTTGTAAATGAACGG
CGTAGTAACGCACACCTTCAGACCGCCAAACGCTGTGTCGGCGCATTAGA
GACTCGACTCGGCGAAATACGGCACAATATACCATTCAATATGCCGACAA
ACGCGGCGGAATACCGCAGCGAGCGCAGCGTCCACACACAACCACTTGCA
TCACACACCACCCCCTGTAGCATCATGTCAGAGGGTGGAGGATGAACACT
GATGGTGCGGAGTGTTGTTTACCTTATGTAAATGTCCCGTGCAATATCGG
TTTTGTATCGGTGTGTGTTGAACCAATCGCTCCTCGTTGTCGGAACGGCG
TTTGTCAGGTTGGCAGGTACCGGTACCTAGTTTTAATACGACGACTTGCG
GTATTTGAACGCGTGCGTCGGCGCGATAATGATACGTGATGGATTGATCT
TTCACCGATCGCAACTATCTGGAAGAAACATACGGTAGGTTTGCATACGG
TACATACATACGATGTTGGCGTGGCGCGTCACCGCAGCACTCAATTTTGA
ATTTTTGTCGGGGTTATCACACCCGGGTGCGATAACCCCAACGGGGGTGC
GAAAATACAATTAAATATTTTTTTCTCGTGTTTTTTTTCGCACCCCGGTG
CCATAACCCCGATGGGTGCCAAAACCCCGAGGGGTGCGATGACCCGCACA
ATTACGGTATCTAACGAATACCTCCATTACTTACCGCTGCCTCTGTAACA
CCTACTCTTGGTTTGTCGAAATAAACAGGTGCTGGGGGTGCTGCAGGTAT
TGGGTAGAGGCAACTGCTTCGCGGATGTTGCGAACTTTTCGCTGATGAGC
CAATCTACGGCGGAGAAGTCCTTTCACCGTTTCTGCGACTGCTTCGCGGG
GGGCTTGTGGCATCAGTGGGTTCGGCTGCCTGAGGGCGATGACCTCAAGC
AAGTGGAGAGCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig726:125169..127481+

>mRNA_P-littoralis_Contig726.19.1 ID=mRNA_P-littoralis_Contig726.19.1|Name=mRNA_P-littoralis_Contig726.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig726:125169..127481+ (Pylaiella littoralis U1_48)
TTCGTTTGTGGACTGGTGAGGCCGGTCTTCCCATCTTCTACAAGAGACGT
CGCTGGGCGTCCCTGCGTCCCCTTGGAGTTGAAGAAACAGGTGCTGGGGG
TGCTGCAGGTATTGGGTAGAGGCAACTGCTTCGCGGATGTTGCGAACTTT
TCGCTGATGAGCCAATCTACGGCGGAGAAGTCCTTTCACCGTTTCTGCGA
CTGCTTCGCGGGGGGCTTGTGGCATCAGTGGGTTCGGCTGCCTGAGGGCG
ATGACCTCAAGCAAGTGGAGAGC
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