mRNA_P-littoralis_Contig720.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.800e-39 Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR +HY +L+TTHHRLLLRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGEDPG+G
Sbjct: 114 ALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 211
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 153 bits (387), Expect = 6.170e-39 Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR +HY +L+TTHHRLLLRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGEDPG+G
Sbjct: 165 ALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 262
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.410e-38 Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR +HY +L+TTHHRLLLRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGEDPG+G
Sbjct: 133 ALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 230
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE) HSP 1 Score: 154 bits (390), Expect = 5.930e-38 Identity = 76/98 (77.55%), Postives = 88/98 (89.80%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR DHY LL+TTHHRLLLRVIGYRR GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGEDPG+G
Sbjct: 255 ALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 352
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.050e-37 Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 2
Query: 413 MTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
MTW+PR DHY LL+TTHHRL LRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQR LLFAGA+ARQ DGRLPKRLMFG+LVGGE+PGRG
Sbjct: 1 MTWSPRRDHYRLLQTTHHRLPLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRG 92
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 155 bits (391), Expect = 1.420e-36 Identity = 75/98 (76.53%), Postives = 89/98 (90.82%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR +HY +L+TTHHRLLLRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGEDPGRG
Sbjct: 913 ALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRG 1010
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.600e-36 Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR +HY +L+TTHHRLLLRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGE+PGRG
Sbjct: 416 ALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRG 513
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE) HSP 1 Score: 153 bits (387), Expect = 2.490e-36 Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR +HY +L+TTHHRLLLRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGEDPG+G
Sbjct: 528 ALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 625
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE) HSP 1 Score: 153 bits (387), Expect = 4.540e-36 Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR +HY +L+TTHHRLLLRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGEDPG+G
Sbjct: 857 ALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 954
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 153 bits (387), Expect = 5.200e-36 Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 2
Query: 398 ALVF-CMTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLVGGEDPGRG 688
AL++ CMTW+PR +HY +L+TTHHRLLLRVIGYRR +GTY+QLSYA+AL++ G Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+LVGGEDPG+G
Sbjct: 1200 ALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 1297 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig720.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig720.23.1 >prot_P-littoralis_Contig720.23.1 ID=prot_P-littoralis_Contig720.23.1|Name=mRNA_P-littoralis_Contig720.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp MTWAPRADHYALLRTTHHRLLLRVIGYRRVQGTYQQLSYAKALEKTGSQCback to top mRNA from alignment at P-littoralis_Contig720:109204..112348+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig720.23.1 ID=mRNA_P-littoralis_Contig720.23.1|Name=mRNA_P-littoralis_Contig720.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3145bp|location=Sequence derived from alignment at P-littoralis_Contig720:109204..112348+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig720:109204..112348+ >mRNA_P-littoralis_Contig720.23.1 ID=mRNA_P-littoralis_Contig720.23.1|Name=mRNA_P-littoralis_Contig720.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig720:109204..112348+ (Pylaiella littoralis U1_48)back to top |