mRNA_P-littoralis_Contig72.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig72.96.1
Unique NamemRNA_P-littoralis_Contig72.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5L5L9_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L9_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 1.760e-73
Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 2
Query:  776 PQETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVFGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1189
            P  +RSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSV GHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD
Sbjct:  114 PALSRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 251          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5L1D8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D8_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 2.250e-73
Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 2
Query:  776 PQETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVFGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1189
            P  +RSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSV GHVETSSS GSVGDMPITTGHG LIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD
Sbjct:  114 PALSRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSYGSVGDMPITTGHGHLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 251          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5JM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM40_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.660e-27
Identity = 76/119 (63.87%), Postives = 91/119 (76.47%), Query Frame = 2
Query:  842 MARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVF---GHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1189
            +AR MGA+++RA++EK XXXXX     SSVG EV PVE  AV+LE+AP  G    GS+    G +E SSSC SVGDM I +GHGLLIEE+CSGQEM+DAEE ++D CDTSSDGFLDGLD
Sbjct:   88 LARTMGAWMQRARREKXXXXXXX---XSSVGGEVGPVENPAVDLEVAPHAGSPGGGSICADSGDLEASSSCSSVGDMSIASGHGLLIEEFCSGQEMRDAEEVLEDNCDTSSDGFLDGLD 203          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KM05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM05_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.220e-26
Identity = 73/113 (64.60%), Postives = 87/113 (76.99%), Query Frame = 2
Query:  842 MARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVF---GHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDG 1171
            +AR MGA+++RA++EK XXXXX    SSSVG EV PVE  AV+LE+AP  GP   GSV    GH+E SSSC SVGDM I +GHGLLIEE+CSGQEM+DAEE ++D CDT SDG
Sbjct:   89 LARTMGAWMQRARREKXXXXXXX---SSSVGGEVGPVENPAVDLEVAPHAGPPGRGSVCADSGHLEASSSCSSVGDMSIASGHGLLIEEFCSGQEMRDAEEVLEDNCDTLSDG 198          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5JH07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH07_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 9.810e-26
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 2
Query:  782 ETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSN-DGSVFGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSS 1165
            ++RSQ++RNRK+L+ Q+   MAR MGAFL RA   +QXXXXX      +VG EV PVEE A  LE+AP T P    G    H E  S+CGSVGDM I +GHGL IEEWCS QEM+DAEE +++ CDTSS
Sbjct:  120 KSRSQQYRNRKKLIAQQVTAMARTMGAFLSRA---RQXXXXXXXXXXXAVGGEVGPVEEPAEGLEVAPHTSPGGAGGGACEHAEAGSNCGSVGDMSIDSGHGLGIEEWCSRQEMEDAEEVLENYCDTSS 245          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KDQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.640e-23
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  487 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVDEE-GTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFA 744
            R KKKK G RG DGRAVPKKPKPAQQ+D  S G+GDA  DG   ADLM+VD+E G AAA+ED NDE+WCDED+SGA+ S+GGGQSIL FA
Sbjct:    3 RPKKKKTGKRGADGRAVPKKPKPAQQHDRPSRGAGDALSDGHDSADLMDVDQEQGKAAADEDGNDEDWCDEDTSGAH-SNGGGQSILSFA 91          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KB31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB31_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.900e-23
Identity = 71/111 (63.96%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  487 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASAAARAARNAEPKIPK 807
            R KKKK   RG DGRAVPKKPKPAQQ+D  S G+GDA  DG    DLM+VD EEG AAA+ED NDE+WCDED+SGA+ S+G GQSIL FA  SVASA   A   AE   P+
Sbjct:    3 RRKKKKIDKRGADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSVDLMDVDQEEGKAAADEDGNDEDWCDEDTSGAH-SNGSGQSILSFAKWSVASAGRDAGSAAEKNPPR 112          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KYZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYZ1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.410e-21
Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  487 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASA---AARAARNAEPKI 801
            R K+KK G R  DGRAVPKKPKPAQQ+D  S G+GDA  DG   ADLM+VD EEG AAA+E+ NDE+WCDED+SG + S+G G+SIL FA  SVASA   A  AA+N  P++
Sbjct:    3 RPKEKKIGKRRADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSADLMDVDQEEGKAAADENGNDEDWCDEDTSGVH-SNGRGRSILSFAKWSVASAGRDARSAAKNYPPRV 113          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KJS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-19
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 1
Query:  487 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASA 765
            R KKKK G    DGRAVPKKPKPAQQ+D  S G+GDA  DG   ADLM+VD EEG AAA+ED NDE+WCDED+SGA+ S+G GQSIL FA  SVASA
Sbjct:    3 RPKKKKIGKCEADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSADLMDVDQEEGKAAADEDGNDEDWCDEDTSGAH-SNGRGQSILSFAKWSVASA 98          
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KFA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.200e-19
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 1
Query:  469 MGKAKGRAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPV---DGADLMEVDEE-GTAAANEDANDEEWCDEDSSGANGSSGGGQSIL 735
            MGK +GR+ KK FG RG DGRAV KKP+P QQ+D  SPG+G A     DGA LM+VDEE GTAAA+ED NDE+W DED SGA+ SSGGGQSIL
Sbjct:    1 MGKPQGRSNKKTFGPRGADGRAVSKKPRPTQQHDLPSPGAGGALSGGHDGAILMDVDEEEGTAAADEDVNDEDWGDEDPSGAH-SSGGGQSIL 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L5L9_9PHAE1.760e-7397.10Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1D8_9PHAE2.250e-7395.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JM40_9PHAE2.660e-2763.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM05_9PHAE4.220e-2664.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH07_9PHAE9.810e-2657.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDQ9_9PHAE4.640e-2371.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB31_9PHAE8.900e-2363.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYZ1_9PHAE5.410e-2161.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS6_9PHAE1.100e-1969.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA3_9PHAE1.200e-1967.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig72contigP-littoralis_Contig72:513042..514264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1191
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791498.8367116-UTR-P-littoralis_Contig72:513041..5135091680791498.8367116-UTR-P-littoralis_Contig72:513041..513509Pylaiella littoralis U1_48UTRP-littoralis_Contig72 513042..513509 +
1680791498.8752499-UTR-P-littoralis_Contig72:514009..5142641680791498.8752499-UTR-P-littoralis_Contig72:514009..514264Pylaiella littoralis U1_48UTRP-littoralis_Contig72 514010..514264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791498.847714-CDS-P-littoralis_Contig72:513509..5138301680791498.847714-CDS-P-littoralis_Contig72:513509..513830Pylaiella littoralis U1_48CDSP-littoralis_Contig72 513510..513830 +
1680791498.857787-CDS-P-littoralis_Contig72:513862..5140091680791498.857787-CDS-P-littoralis_Contig72:513862..514009Pylaiella littoralis U1_48CDSP-littoralis_Contig72 513863..514009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig72.96.1prot_P-littoralis_Contig72.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig72 513510..514009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig72.96.1

>prot_P-littoralis_Contig72.96.1 ID=prot_P-littoralis_Contig72.96.1|Name=mRNA_P-littoralis_Contig72.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MGKAKGRAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDGADL
MEVDEEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASAA
ARAARNAEPKIPKQKKASRTRNEGHGTIHGSILAAGAAGKAATVGAGRGG
ELLCR*
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mRNA from alignment at P-littoralis_Contig72:513042..514264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig72.96.1 ID=mRNA_P-littoralis_Contig72.96.1|Name=mRNA_P-littoralis_Contig72.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1223bp|location=Sequence derived from alignment at P-littoralis_Contig72:513042..514264+ (Pylaiella littoralis U1_48)
GGCGCATCGCGTGACGGAGAGTTTTTGTTTTTTTTTTCCTTGACTTTTTA TCTCCGATAAACCGGAAAATCTTGTTTTGTTTTTCGAGAGGTGTGTTGTT TGTTGATGCCACCAAACTCAACGGTTTTGGACAGATCTCGGAATTTGCCA GGTGGGATTTTTTTTTTTTTTGAAATATTCGAAATTGACGGAGATATACA GGGAAAACTTGATTTAAAGGGTCAACTTGTTTTGTTTTATATGCAATAAC TAATCGACCGATTTCAAAATAGAGTGCGGCAAACGATTCCTCTCGACCAT CCCCAGGTGGGAATTTCTTGGTTTTGCTGGGAAAAATCTGGTTCTCGAGA TATTCGCGTTGTTGTTGTTCCGCGCCATGCGGTGACTTTTTTTTTTCCTG GGCGCACGCGGTGCCCAACAACTGCGCACGCGGCAACCCGAACAACACAA AACACGCACACAAGCACCATGGGGAAGGCTAAGGGACGGGCAAAGAAGAA GAAATTCGGAAATCGCGGACCCGATGGCAGGGCGGTTCCTAAAAAGCCGA AGCCGGCGCAGCAAAATGATAACTCATCGCCCGGCTCTGGTGATGCACCA GTCGACGGCGCGGATTTGATGGAGGTGGATGAAGAAGGGACGGCAGCGGC AAACGAGGACGCCAACGATGAGGAGTGGTGCGATGAGGATTCCAGCGGTG CAAACGGCAGCAGTGGTGGAGGTCAGTCGATACTGCGTTTTGCGCACCGG TCTGTAGCGTCCGCAGCAGCGCGCGCCGCAAGAAACGCGGCGAAAAAAAT CTCGCCGCCTGCACTGTCCAGGAGCCAAAAATTCCGAAACAGAAAAAGGC TTCTCGGACAAGAAACGAAGGACATGGCACGATTCATGGGAGCATTCTTG CGGCGGGCGCAGCAGGAAAAGCAGCAACAGTCGGAGCAGGAAGAGGTGGA GAGCTCCTCTGTCGGTAACGAGGTTCGTCCTGTAGAGGAATCGGCGGTGA ATTTAGAGATTGCACCGCCTACTGGTCCCTCGAACGACGGCAGCGTGTTC GGACATGTAGAGACCAGCAGTAGCTGTGGCAGTGTCGGCGACATGCCCAT AACCACGGGTCACGGGCTTCTGATAGAGGAGTGGTGTAGCGGTCAGGAGA TGAAGGACGCCGAAGAAGCGATGGATGACATTTGCGATACCTCATCAGAC GGGTTTCTTGACGGTTTGGATTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig72:513042..514264+

>mRNA_P-littoralis_Contig72.96.1 ID=mRNA_P-littoralis_Contig72.96.1|Name=mRNA_P-littoralis_Contig72.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig72:513042..514264+ (Pylaiella littoralis U1_48)
ATGGGGAAGGCTAAGGGACGGGCAAAGAAGAAGAAATTCGGAAATCGCGG
ACCCGATGGCAGGGCGGTTCCTAAAAAGCCGAAGCCGGCGCAGCAAAATG
ATAACTCATCGCCCGGCTCTGGTGATGCACCAGTCGACGGCGCGGATTTG
ATGGAGGTGGATGAAGAAGGGACGGCAGCGGCAAACGAGGACGCCAACGA
TGAGGAGTGGTGCGATGAGGATTCCAGCGGTGCAAACGGCAGCAGTGGTG
GAGGTCAGTCGATACTGCGTTTTGCGCACCGGTCTGTAGCGTCCGCAGCA
GCGCGCGCCGCAAGAAACGCGGAGCCAAAAATTCCGAAACAGAAAAAGGC
TTCTCGGACAAGAAACGAAGGACATGGCACGATTCATGGGAGCATTCTTG
CGGCGGGCGCAGCAGGAAAAGCAGCAACAGTCGGAGCAGGAAGAGGTGGA
GAGCTCCTCTGTCGGTAA
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