mRNA_P-littoralis_Contig72.96.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5L5L9_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L9_9PHAE) HSP 1 Score: 246 bits (627), Expect = 1.760e-73 Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 2
Query: 776 PQETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVFGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1189
P +RSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSV GHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD
Sbjct: 114 PALSRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 251
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5L1D8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D8_9PHAE) HSP 1 Score: 239 bits (609), Expect = 2.250e-73 Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 2
Query: 776 PQETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVFGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1189
P +RSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSV GHVETSSS GSVGDMPITTGHG LIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD
Sbjct: 114 PALSRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSYGSVGDMPITTGHGHLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 251
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5JM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM40_9PHAE) HSP 1 Score: 124 bits (312), Expect = 2.660e-27 Identity = 76/119 (63.87%), Postives = 91/119 (76.47%), Query Frame = 2
Query: 842 MARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVF---GHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1189
+AR MGA+++RA++EK XXXXX SSVG EV PVE AV+LE+AP G GS+ G +E SSSC SVGDM I +GHGLLIEE+CSGQEM+DAEE ++D CDTSSDGFLDGLD
Sbjct: 88 LARTMGAWMQRARREKXXXXXXX---XSSVGGEVGPVENPAVDLEVAPHAGSPGGGSICADSGDLEASSSCSSVGDMSIASGHGLLIEEFCSGQEMRDAEEVLEDNCDTSSDGFLDGLD 203
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KM05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM05_9PHAE) HSP 1 Score: 119 bits (297), Expect = 4.220e-26 Identity = 73/113 (64.60%), Postives = 87/113 (76.99%), Query Frame = 2
Query: 842 MARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVF---GHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDG 1171
+AR MGA+++RA++EK XXXXX SSSVG EV PVE AV+LE+AP GP GSV GH+E SSSC SVGDM I +GHGLLIEE+CSGQEM+DAEE ++D CDT SDG
Sbjct: 89 LARTMGAWMQRARREKXXXXXXX---SSSVGGEVGPVENPAVDLEVAPHAGPPGRGSVCADSGHLEASSSCSSVGDMSIASGHGLLIEEFCSGQEMRDAEEVLEDNCDTLSDG 198
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5JH07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH07_9PHAE) HSP 1 Score: 120 bits (300), Expect = 9.810e-26 Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 2
Query: 782 ETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSN-DGSVFGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSS 1165
++RSQ++RNRK+L+ Q+ MAR MGAFL RA +QXXXXX +VG EV PVEE A LE+AP T P G H E S+CGSVGDM I +GHGL IEEWCS QEM+DAEE +++ CDTSS
Sbjct: 120 KSRSQQYRNRKKLIAQQVTAMARTMGAFLSRA---RQXXXXXXXXXXXAVGGEVGPVEEPAEGLEVAPHTSPGGAGGGACEHAEAGSNCGSVGDMSIDSGHGLGIEEWCSRQEMEDAEEVLENYCDTSS 245
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KDQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ9_9PHAE) HSP 1 Score: 102 bits (253), Expect = 4.640e-23 Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 487 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVDEE-GTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFA 744
R KKKK G RG DGRAVPKKPKPAQQ+D S G+GDA DG ADLM+VD+E G AAA+ED NDE+WCDED+SGA+ S+GGGQSIL FA
Sbjct: 3 RPKKKKTGKRGADGRAVPKKPKPAQQHDRPSRGAGDALSDGHDSADLMDVDQEQGKAAADEDGNDEDWCDEDTSGAH-SNGGGQSILSFA 91
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KB31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB31_9PHAE) HSP 1 Score: 102 bits (255), Expect = 8.900e-23 Identity = 71/111 (63.96%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 487 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASAAARAARNAEPKIPK 807
R KKKK RG DGRAVPKKPKPAQQ+D S G+GDA DG DLM+VD EEG AAA+ED NDE+WCDED+SGA+ S+G GQSIL FA SVASA A AE P+
Sbjct: 3 RRKKKKIDKRGADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSVDLMDVDQEEGKAAADEDGNDEDWCDEDTSGAH-SNGSGQSILSFAKWSVASAGRDAGSAAEKNPPR 112
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KYZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYZ1_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 5.410e-21 Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 1
Query: 487 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASA---AARAARNAEPKI 801
R K+KK G R DGRAVPKKPKPAQQ+D S G+GDA DG ADLM+VD EEG AAA+E+ NDE+WCDED+SG + S+G G+SIL FA SVASA A AA+N P++
Sbjct: 3 RPKEKKIGKRRADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSADLMDVDQEEGKAAADENGNDEDWCDEDTSGVH-SNGRGRSILSFAKWSVASAGRDARSAAKNYPPRV 113
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KJS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS6_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.100e-19 Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 487 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASA 765
R KKKK G DGRAVPKKPKPAQQ+D S G+GDA DG ADLM+VD EEG AAA+ED NDE+WCDED+SGA+ S+G GQSIL FA SVASA
Sbjct: 3 RPKKKKIGKCEADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSADLMDVDQEEGKAAADEDGNDEDWCDEDTSGAH-SNGRGQSILSFAKWSVASA 98
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Match: A0A6H5KFA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA3_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.200e-19 Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 469 MGKAKGRAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPV---DGADLMEVDEE-GTAAANEDANDEEWCDEDSSGANGSSGGGQSIL 735
MGK +GR+ KK FG RG DGRAV KKP+P QQ+D SPG+G A DGA LM+VDEE GTAAA+ED NDE+W DED SGA+ SSGGGQSIL
Sbjct: 1 MGKPQGRSNKKTFGPRGADGRAVSKKPRPTQQHDLPSPGAGGALSGGHDGAILMDVDEEEGTAAADEDVNDEDWGDEDPSGAH-SSGGGQSIL 92 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig72.96.1 >prot_P-littoralis_Contig72.96.1 ID=prot_P-littoralis_Contig72.96.1|Name=mRNA_P-littoralis_Contig72.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp MGKAKGRAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDGADLback to top mRNA from alignment at P-littoralis_Contig72:513042..514264+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig72.96.1 ID=mRNA_P-littoralis_Contig72.96.1|Name=mRNA_P-littoralis_Contig72.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1223bp|location=Sequence derived from alignment at P-littoralis_Contig72:513042..514264+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig72:513042..514264+ >mRNA_P-littoralis_Contig72.96.1 ID=mRNA_P-littoralis_Contig72.96.1|Name=mRNA_P-littoralis_Contig72.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig72:513042..514264+ (Pylaiella littoralis U1_48)back to top |