mRNA_P-littoralis_Contig714.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig714.12.1
Unique NamemRNA_P-littoralis_Contig714.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 574 bits (1479), Expect = 1.950e-191
Identity = 322/530 (60.75%), Postives = 364/530 (68.68%), Query Frame = 1
Query:    1 YAALDAYACLLLYDRITELSDPVFRDSDDLSLGDNVRLYTRGGNDCVGEGCIVEYGEETWGTAGFFLGPRRTTRGHARRWTVRLDKVHVARAKALYPDADKPRGATATAQIGDRAGSVVLWDANRLRKTS---TSAAA----------------------------------------------------------TTSPE--------GTAGGAVPGTV--------MGGGEAAFTTPSEPFFAGQLDGIEALSSESVAYSAA----AEEGGYMEQGGKEGDA----------TDKAEV--------ARLVVKLDAFHAMQRQSKLILKSHGACGAYLARLRDAFFKINAEDLAAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            YAALDAYACLLL+ RI ELSD +FRD+++L +GD VRLYTR GNDCVGEGCIVE+ +ETWGT GF+L PRR TR  ARRW VRLD+VHV RAK LYPDA  PRG  ATAQ+  R  SV+LWDA+RLRKT+   T  AA                                                          T S E        G  G  +P +V         G G   F TPSEPFF G+LDGIEALSSESVA SA     A+EG     GG + +           T  AEV        A LVVKLD FHAMQR SKLILKSHGAC AYLARLRDAFFK+NAEDLAAVEAAL QAGMS++EV+ KK K+W YFLKRCRR+IP PAEL++RFDLVN +YGGL+DKKTK+PLFRAEALEA+KRLRVHI+ DCCSD+PN+ALYFEAGKD+ET C ++RC+ GTNDLEGYHLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFYDQPMLEAI
Sbjct:  392 YAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLYTRAGNDCVGEGCIVEHTDETWGTTGFYLVPRRATRRFARRWAVRLDRVHVPRAKTLYPDATDPRGTPATAQLASRVDSVILWDASRLRKTTAILTVGAAGEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEARTAAXXXXTSSVHVETSTVSCERGGPGGGGGKEGPRLPDSVGEADARRGAGQGGTEFVTPSEPFFCGELDGIEALSSESVACSAGSGGLADEGQAATAGGDDEEEDEVPLDVTADTSSAEVEELLFLKVAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAI 921          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 480 bits (1235), Expect = 2.960e-162
Identity = 278/480 (57.92%), Postives = 323/480 (67.29%), Query Frame = 1
Query:   43 RITELSDPVFRDSDDLSLGDNVRLYTRGGNDCVGEGCIVEYGEETWGTAGFFLGPRRTTRGHARRWTVRLDKVHVARAKALYPDADKPRGATATAQIGDRAGSVVLWDANRLRKTSTSAAATTSPEGTAGGA--------------VPGTVMGGGEAA------FTTPSEPFFA---------------GQLDGIEALSSESVAYSA---------------AAEEGGYMEQGGKEGDAT---DKAEVARLV-VKLDAF----HAMQRQ-----SKLILKSHGACGAYLARLRDAFFKINAEDLAAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            RI ELSD +FRD++++ +GD+VRLYTR GNDCVGEGCIVE+ +ETWGT G +L PRR TRG ARRW V LD+VHV RAKALYPDA   RG  ATAQ+  R  SV+LWDA+RLRK       T +P   A GA                       EAA        T SE   A               G  +G   L+ E  A                  A   GG  E+     D T     AEV  L+ +KL A     +A+ R      SKLILKSHGAC AYLARLRD FFK+NAEDLAAVEAAL QAGMS++EV+ KK K+W  FLKRCRR+IP PAEL+KRFD+VN +YGGL+DKKTK+PLFRAEALEA+KRLRVHI+ DCCSDAPN+ALYFEAGKD+ET C ++RC+ GTNDLEG+HLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFYDQP+LEAI
Sbjct:   50 RIGELSDSIFRDAEEMHVGDSVRLYTRAGNDCVGEGCIVEHTDETWGTTGIYLVPRRATRGFARRWAVHLDRVHVPRAKALYPDATDRRGDPATAQLASRVDSVILWDASRLRKM------TATPSAGAAGAPXXXXXXXXXXXXXXXXXXXXXXEAARAPAEEAATSSEHVEASTVSCERSGLRATNGGGKEGAGGLTDERQAXXXXXXXXXXXXXXXXXXATARGGDDEEAEVLLDVTADMSSAEVEELLFLKLKALDQRNYALLRLAAGEVSKLILKSHGACRAYLARLRDEFFKVNAEDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRFDVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAI 523          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 1.580e-77
Identity = 118/143 (82.52%), Postives = 135/143 (94.41%), Query Frame = 1
Query:  865 RVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            R+IP PAEL++RFDLVN +YGGL+DKKTK+PLFRAEALEA+KRLRVHI+ DCCSD+PN+ALYFEAGKD+ET C ++RC+ GTNDLEGYHLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFYDQPMLEAI
Sbjct:  206 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAI 348          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 248 bits (632), Expect = 1.940e-71
Identity = 168/440 (38.18%), Postives = 228/440 (51.82%), Query Frame = 1
Query:    1 YAALDAYACLLLYDRITELSDPVFRD-SDDLSLGDNVRLYTRGGNDCVGEGCIVEYGEETWGTAGFFLGPRRTTRGHARRWTVRLDKVHVARAKALYPDADKPRGATATAQIGDRAGSVVLWDANRLRKTSTSAAATTSPEGTAGGAVPGTVMGGGEAAFTTPSEPFFAG-------QLDGIEALSSESVAYSAAAEEGGYMEQGGKEGDATDKAEVARLVVKLDAFHAMQRQSKLILKSHGACGAYLARLRDAFFKINAEDLAAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            YAALDAYA  L+++ I    DP      D L  G  V ++T+   +CV    IVEY E  WG       P +      +R  ++LD+V    A ++Y    + R       + +     VLWD   LR  +  + A       +   V    +   E  F TPS+ FF          ++  E L ++    S    E               + +   L V+LD FHAM R +K +LKSHGA   ++ARLRDAFF I+ +DL  V AAL  AG+S DE++ KK  +WA+FLK C R+IP   EL+KR+D V   +  ++D KT +PLFR+   + V+ LR HI   C SD P+  LYF  G+ S+    IYRC  GTN  EGYH HMR LL  +  SP L HLLLLE N+RWN+R ++ NRGL    GGFY Q +L+ I
Sbjct:  229 YAALDAYASRLVHENIVAKRDPRSEPIPDSLQPGTKVFVFTKSDAECVARATIVEYSEPKWG-------PLQLKTASKQRVVIKLDEVLNNSAISMY----RQRLDKDIKPLRELHSQTVLWDIAHLRCETQESLAWMESLAISSDRV----IQSSEQDFITPSDIFFTSIPISRGSVVESDENLFTDENDASDCESEADXXXXXXXXXXXXXRPDGFILKVRLDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFLISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRYDFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTSQG-LPIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLDEI 652          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 8.660e-59
Identity = 165/464 (35.56%), Postives = 230/464 (49.57%), Query Frame = 1
Query:    1 YAALDAYACLLLYDRITELSDPVFRDSDDLSLGDNVRLYTRGGNDCVGEGCIVEYGEETWGTAGFFLGPRRTTR-GHARRWTVRLDKV-----HVARAKALYPDADKPRGATATAQIGDRAGSVVLWDANRLRKTSTSAAATTSPEGTAGGAVPGTVMGGGEAAFTTPSEPFF------------AGQLDGIEALSSES-------------VAYSAAAEEGGYMEQGGKEGDATDKAEVARLV-VKLDAFHAMQRQSKLILKSHGACGAYLARLRDAFFKINAEDLAAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            YA LDAYA +LL+  I +  DP+F        G+        G     E   +    E WGT    LG R  TR G  +R  V++D        V   KA  P  D  R  T    + D AG  VLWD   +R  S            A  +  GT + GG A      + FF             G ++      SES             +A S A+  G        +     + E   +  V+LD FHA+ R S+ I K HGA    +ARLRDA F +N +D+  +E  L + GMS  +V   K ++W+YFL++CRR++PPP+EL+KRFD V + +G  VD  +K+ L R ++++AV  LR HIV  C SD    A+Y+  GK ++     YRCV GTND+EGYH ++R LL ++C SP LA  +LLE N+RWNL+  + NRGL   +G  Y+Q ++E I
Sbjct:  326 YACLDAYAAVLLHAEIGKFKDPIF--------GEAPSEVPAAGTKTEEEATSLL---EKWGTV-LTLGGRVGTRSGGLQRVVVKVDNALKPSSFVPHDKAPPPAQDGQRRVTVK-DVVDGAG-FVLWDIVHVRLAS------------AHRSFEGTPLPGGAADADAHQDDFFDAPRPAQAVYQNGGDVESDLEADSESDDDTFGESGAGADLASSEASSGGPSASXXXXDAAVASQEEAGDMFFVRLDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRFDKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTTDGLVN-YRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEII 762          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 2.670e-53
Identity = 169/494 (34.21%), Postives = 233/494 (47.17%), Query Frame = 1
Query:    1 YAALDAYACLLLYDRITELSDPVF--RDSDDLSLGDNVRLYTRGGNDCVGEGCIVEYGE-----ETWGTAGFFLGPRRTTR-GHARRWTVRLDKVHVARAKALYPDAD----------KPRGATATAQIGDRAG--SVVLWDANRLRKTSTS--------AAATTSPEGTAGG------AVPGTVMGGGEAAFTTPSEPFFAGQLDGIEALSS-------------ESVAYSAAAEEGGYMEQGGKEGDATDKAEVARLV--VKLDAFHAMQRQSKLILKSHGACGAYLARLRDAFFKINAEDL-------------AAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            YA LDAYA ++L+  I +  DP+F    SD    G  VRLYT     CVG G + +        E WGT    L  R  TR G  +R  V++  V V +  +L P  D          +PR A +   +    G    VLWD   +R  S           AA+  P+                    G+       EP  +   D ++  ++                A SAA                    E    V  V+LD FH + R S++  KSHGA   ++ARLRDA F +N +D+              +VE  L   GM  +EV     +NW++FL+  RR++P    L+KRFD V + +GG VD  + + L R +A++AV++LR HI  DC SD    A+YF  GK+     T YRCV GTND+EGYH ++R LL ++C SP LA  +LLE NYRWNLR  I NRGL  A+GG Y+Q ++E+I
Sbjct:  229 YACLDAYAAVVLHAEIGKSKDPIFCMAPSDIPIAGTEVRLYTNNHESCVGVGQVQDEEAARSLVEKWGTD-LKLAQREGTRSGGLKRVVVKV--VDVLKPASLTPHQDAPPXXXXXXGQPRVAVSMNDVHSGKGFEGFVLWDLVHVRLASDHHPFQGIPVPAASADPDAHVDNFFDEPRPAQAVYQNDGDVESALGGEPDGSSDDDTLDESAAGVGAXXXXXXXXXXKGAASAAXXXXXXXXXXXXXXXXXXAPEEPHGVFSVRLDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKHG-LTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESI 718          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 9.930e-53
Identity = 108/224 (48.21%), Postives = 145/224 (64.73%), Query Frame = 1
Query:  634 LVVKLDAFHAMQRQSKLILKSHGACGAYLARLRDAFFKINAEDL---AAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            L V+LD FHA+QR SKL  KSHGA   ++ARLRDA F +N +D+   +AVE AL   GM+ + V   K KNW +F++ CRR++P    L++RF+LV + +  +VD K+ + L R  A +AV+ LR HI   C SD     LY+ +GK+S    T  RCV GTN  EGYH ++R LL  +C SP LAH +LLE NYRWN+R ++ NRGL   VG F+DQ  +E I
Sbjct:  176 LKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNS-AGITTRRCVRGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEII 398          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.030e-49
Identity = 106/224 (47.32%), Postives = 141/224 (62.95%), Query Frame = 1
Query:  634 LVVKLDAFHAMQRQSKLILKSHGACGAYLARLRDAFFKINAEDL---AAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            L V+LD FHA+QR SKL  KSHGA   ++ARLRDA F +N +D+   +AVE AL   GM+ + V   K KNW +F++ CRR++P    L++RF+LV + +  +VD K+ + L R  A +AV+ LR HI   C SD     LY+       TR    RCV GTN  EGYH ++R LL  +C SP LAH +LLE NYRWN+R ++ NRGL   VG F+DQ  +E I
Sbjct:  176 LKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTKSAGITTR----RCVRGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEII 395          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.570e-40
Identity = 147/479 (30.69%), Postives = 207/479 (43.22%), Query Frame = 1
Query:   46 ITELSDPVFRDSD-DLSLGDNVRLYTRGGNDCVGEGCIVEYGEETWGTAGFFLGPRRTTRGHARRWTVRLDKVHVARAKALYPDADKPRGATATAQI-------GDRAGSVVLWDANRLR-----KTSTSAAATTSPEGTAGGAVPGTVMGGGEAAFTTPSEPFFAGQLDGIEALSSESVAY---------SAAAEEGGY---MEQGGKEGDATDKA--------------------------------------EVARLVVKLDAFHAMQRQSKLILKSHGACGAYLARLRDAFFKINAEDLAAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGGFYDQPMLEAI 1293
            + +  DP+F     +L  G  VRLY+     CVG G + +        AG+F G RR  +G   +  V L  V    A   +     P  A+   ++       GDR   +VLWD   +R     K S +AAA +S E  +               FT+P  P      D  +    +   Y         S+A  + G+   +E GG  G A +                                        E   L V+LD FHA+QR S+L  KSHGA   ++ARLRDA F +N +D+  VE AL   GM+ + V   K KNW YFL+ CRR++P    L++RF+ V   +  +VD K+ + L R +A++AV +LR HI  DC SD     LY+  G+++    T  RCV GTN  E                          NYRWN+R ++ NRGL   VG F+DQ  +E I
Sbjct:  252 VAKFQDPIFSPPPVELHPGTKVRLYSNNHASCVGVGEVQDDDTAAEALAGWFPGARR--KGRLTQVVVGLSGVFKPAAYTAHKGT--PSAASGVGRVTMDEAYKGDR---LVLWDVAHVRLVSDWKPSPAAAAPSSNENAS------EAYNDNAQFFTSPRPPHVVRLQDDEDPDDGDEEEYDGHDCGDLGSSARGDHGFWAGVEAGGGGGGAVNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVDMDDWLGDEQCALQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKNWTYFLRNCRRLVPERQRLLERFNSVINQFCNVVDAKSGEVLIRPKAMQAVDQLRKHIESDCLSDPHGVPLYYTTGQNA-AGITTRRCVRGTNYTE-------------------------FNYRWNIRMAVKNRGLPREVGEFFDQFEIEII 691          
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.040e-37
Identity = 144/438 (32.88%), Postives = 196/438 (44.75%), Query Frame = 1
Query:    1 YAALDAYACLLLYDRITELSDPVFRD--SDDLSLGDNVRLYTRGGNDCVGEGCIVEYGE-----ETWGTAGFFLGPRRTTR-GHARRWTVRLDKVHVARAKALYPDADKPRG-ATATAQIGDRAGSV---------VLWDANRLRKTSTSAAATTSPEGTAGGAVPGTVMGGGEAAFTTPSEPFFAGQLDGIEALSSESVAYSAAAEEGGYMEQGGKEGDATDKAEVARLVVKLDAFHAMQRQSKLILKS------HGAC-GAYLARLRDAFFKINAEDLAAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRFDLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYFEAGKDSETRCTIYRCV*GTNDLEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNR 1239
            YA LDAYA +LL+  I    DP+F +  S+  + G  VRLYT     CV  G +    E     E WGT    LG R  TR G  RR  V+++        AL P +  P   A   AQ G    S+         VLWD   +R  S            A  +  GT + GG A        FF                                  DA   A+          +H ++    LI ++      H A  G   A   DA    +A   + VE  L   GM+  + +  K  NW++FLKRCRR++PPP+EL+K FD V + +G  VD  +K+ L R ++++AV+ LR HIV  C SD    A+Y+  GK ++     YRCV GTND+EGYH     L ++  SP LA  +LLE N+RWNL+  + NR
Sbjct:  621 YACLDAYAAVLLHTEIGNFKDPIFSEAPSEVPAAGTKVRLYTNNHASCVAVGHVQTEDEASSLLEKWGTV-LTLGGRVGTRSGGLRRVVVKVNN-------ALKPFSFVPHDTAPPPAQHGQGRVSIKDVVAGDGFVLWDLVHVRLAS------------AHRSFEGTPLPGGAADADAYQHDFF----------------------------------DAPRPAQAV--------YHNVRSMQVLIWRAVEQAVEHAASSGGPSASGADA----DAAVASQVEKVLECRGMTPAQAEQVKDHNWSFFLKRCRRLVPPPSELLKPFDKVVEEFGNCVDNVSKEALLRPKSMKAVRLLRKHIVAGCLSDPDGVAMYYAIGKTTDG-LVRYRCVRGTNDVEGYH-----LASYSASPALAQSVLLEFNFRWNLKMMVKNR 986          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig714.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE1.950e-19160.753'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE2.960e-16257.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE1.580e-7782.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2A9B5_9FUNG1.940e-7138.183'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI8.660e-5935.563'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE2.670e-5334.213'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JPK9_9PHAE9.930e-5348.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE3.030e-4947.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV1_ECTSI4.570e-4030.69Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
A0A6H5K4M0_9PHAE2.040e-3732.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig714contigP-littoralis_Contig714:136771..138491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3Q9
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size1293
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons3
Evalue7.09e-35
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size651
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.3074002-UTR-P-littoralis_Contig714:136770..1369591680791489.3074002-UTR-P-littoralis_Contig714:136770..136959Pylaiella littoralis U1_48UTRP-littoralis_Contig714 136771..136959 -
1680791489.360305-UTR-P-littoralis_Contig714:138038..1384911680791489.360305-UTR-P-littoralis_Contig714:138038..138491Pylaiella littoralis U1_48UTRP-littoralis_Contig714 138039..138491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.3231502-CDS-P-littoralis_Contig714:136959..1371971680791489.3231502-CDS-P-littoralis_Contig714:136959..137197Pylaiella littoralis U1_48CDSP-littoralis_Contig714 136960..137197 -
1680791489.3342743-CDS-P-littoralis_Contig714:137355..1375971680791489.3342743-CDS-P-littoralis_Contig714:137355..137597Pylaiella littoralis U1_48CDSP-littoralis_Contig714 137356..137597 -
1680791489.3499525-CDS-P-littoralis_Contig714:137867..1380381680791489.3499525-CDS-P-littoralis_Contig714:137867..138038Pylaiella littoralis U1_48CDSP-littoralis_Contig714 137868..138038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig714.12.1prot_P-littoralis_Contig714.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig714 136960..138038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig714.12.1

>prot_P-littoralis_Contig714.12.1 ID=prot_P-littoralis_Contig714.12.1|Name=mRNA_P-littoralis_Contig714.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=217bp
MGGGEAAFTTPSEPFFAGQLDGIEALSSESVAYSAAAEEGGYMEQGGKEG
DATDKAEVARLVVKLDAFHAMQRQSKLILKSHGACGAYLARLRDAFFKIN
AEDLAAVEAALLQAGMSQDEVDIKKTKNWAYFLKRCRRVIPPPAELVKRF
DLVNKVYGGLVDKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPNQALYF
EAGKDSETRCTIYRCV*
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mRNA from alignment at P-littoralis_Contig714:136771..138491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig714.12.1 ID=mRNA_P-littoralis_Contig714.12.1|Name=mRNA_P-littoralis_Contig714.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1721bp|location=Sequence derived from alignment at P-littoralis_Contig714:136771..138491- (Pylaiella littoralis U1_48)
TACGCGGCGCTTGATGCGTACGCGTGTCTTCTGCTCTATGATCGCATCAC GGAGCTGTCGGACCCTGTTTTCCGAGATAGTGATGACCTCAGCCTGGGAG ACAATGTGCGTCTCTACACCCGCGGGGGGAATGACTGCGTAGGAGAGGGG TGCATTGTCGAGTACGGGGAGGAGACGTGGGGGACAGCAGGCTTCTTCTT GGGGCCTCGTCGGACAACACGAGGCCACGCACGACGGTGGACTGTGCGCT TGGATAAGGTGCACGTAGCCCGTGCAAAAGCTTTGTATCCAGACGCTGAT AAACCCCGAGGAGCTACCGCAACGGCGCAGATTGGGGATCGGGCGGGCAG CGTCGTGTTGTGGGACGCAAATCGTTTGCGGAAGACTTCCACGTCAGCAG CAGCGACTACCAGCCCGGAGGGGACTGCGGGGGGTGCAGTACCCGGGACT GTGATGGGGGGCGGGGAGGCGGCGTTCACTACCCCATCCGAGCCCTTCTT CGCCGGACAATTAGACGGCATTGAAGCGCTCAGCTCCGAGTCCGTGGCTT ATTCGGCAGCTGCTGAAGAAGGGGGCTACATGGAACAAGGGGGCAAGGAG GGGGATGCCACTGACAAGGCAGAGGTTGTTGACGTGACGGGAGACTTGCC TGCCGCAGAGCTTGAAGATTTTCAATTTCTCAAGGTGCGAACCATAACGA TAAACTGTTGAACCTACATTTTTTGTTTTCAAGTCTAAGAAGTTCATGTG TTTGACAACATGCATGCCCTAGGTTCGGTGAAATATTGTTTTGTACAACG ATGTTTTCTTTTTTCAGGTTGCTGGGCTCGTTGTGCGTTCTCATCTAAGT TCGGTGAAGGTAGTGTTTTTGACAACAACCTTTTTTTTTTTCAGGTTGCT AGGCTCGTTGTGAAGCTTGATGCTTTCCATGCAATGCAGCGGCAAAGCAA GCTCATCCTCAAGAGCCACGGCGCGTGCGGTGCATACTTGGCACGGTTGA GAGATGCCTTTTTCAAGATAAACGCAGAAGATCTCGCTGCCGTGGAAGCG GCGCTATTGCAGGCGGGGATGAGCCAAGATGAGGTAGACATCAAAAAGAC GAAGAACTGGGCTTACTTCCTCAAACGGTGCCGAAGGTGACCCATTTGTT CCCTAGCAATGAATCTGTAATTTGTTTTGGCAGTACTCACCGTATTCACC ACAGCATGTGAAAGGAAAACTGAATGTCCGAGCACGTTGTCCCTCGCGAA TGCGCTGCTGTCTTGCTCCTCCCTCTCGCTTTTGCGGTCGGCAGGGTGAT CCCGCCACCAGCAGAGCTTGTCAAGCGCTTTGACTTAGTGAACAAGGTTT ATGGTGGGCTTGTTGACAAGAAGACGAAGAAGCCCCTGTTTCGGGCGGAG GCGCTGGAGGCCGTCAAGCGTCTCCGAGTACACATAGTGGAAGATTGCTG TAGTGACGCCCCGAACCAAGCGCTGTACTTTGAGGCGGGCAAGGATTCAG AAACTCGTTGTACAATTTATCGCTGTGTTTGAGGCACTAACGACCTAGAG GGGTACCACTTGCACATGCGCTTGTTGGTCGCATGGTGTTTGTCGCCCAG GCTGGCTCACCTCCTGCTTCTTGAGCACAACTACAGGTGGAACCTACGCC AGAGCATCAACAACCGCGGACTTAGCGAGGCTGTTGGGGGATTCTACGAC CAACCAATGCTCGAGGCCATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig714:136771..138491-

>mRNA_P-littoralis_Contig714.12.1 ID=mRNA_P-littoralis_Contig714.12.1|Name=mRNA_P-littoralis_Contig714.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig714:136771..138491- (Pylaiella littoralis U1_48)
ATGGGGGGCGGGGAGGCGGCGTTCACTACCCCATCCGAGCCCTTCTTCGC
CGGACAATTAGACGGCATTGAAGCGCTCAGCTCCGAGTCCGTGGCTTATT
CGGCAGCTGCTGAAGAAGGGGGCTACATGGAACAAGGGGGCAAGGAGGGG
GATGCCACTGACAAGGCAGAGGTTGCTAGGCTCGTTGTGAAGCTTGATGC
TTTCCATGCAATGCAGCGGCAAAGCAAGCTCATCCTCAAGAGCCACGGCG
CGTGCGGTGCATACTTGGCACGGTTGAGAGATGCCTTTTTCAAGATAAAC
GCAGAAGATCTCGCTGCCGTGGAAGCGGCGCTATTGCAGGCGGGGATGAG
CCAAGATGAGGTAGACATCAAAAAGACGAAGAACTGGGCTTACTTCCTCA
AACGGTGCCGAAGGGTGATCCCGCCACCAGCAGAGCTTGTCAAGCGCTTT
GACTTAGTGAACAAGGTTTATGGTGGGCTTGTTGACAAGAAGACGAAGAA
GCCCCTGTTTCGGGCGGAGGCGCTGGAGGCCGTCAAGCGTCTCCGAGTAC
ACATAGTGGAAGATTGCTGTAGTGACGCCCCGAACCAAGCGCTGTACTTT
GAGGCGGGCAAGGATTCAGAAACTCGTTGTACAATTTATCGCTGTGTTTG
A
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