mRNA_P-littoralis_Contig712.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig712.1.1
Unique NamemRNA_P-littoralis_Contig712.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig712contigP-littoralis_Contig712:29055..29627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size503
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791486.8606253-UTR-P-littoralis_Contig712:29054..292331680791486.8606253-UTR-P-littoralis_Contig712:29054..29233Pylaiella littoralis U1_48UTRP-littoralis_Contig712 29055..29233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791486.8721867-CDS-P-littoralis_Contig712:29233..294941680791486.8721867-CDS-P-littoralis_Contig712:29233..29494Pylaiella littoralis U1_48CDSP-littoralis_Contig712 29234..29494 -
1680791486.882988-CDS-P-littoralis_Contig712:29564..296271680791486.882988-CDS-P-littoralis_Contig712:29564..29627Pylaiella littoralis U1_48CDSP-littoralis_Contig712 29565..29627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig712.1.1prot_P-littoralis_Contig712.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig712 29234..29627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig712.1.1

>prot_P-littoralis_Contig712.1.1 ID=prot_P-littoralis_Contig712.1.1|Name=mRNA_P-littoralis_Contig712.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
NGVGTALGAGTTKLVQQGAGTNGAGTAGSWYSGRGYNGVGTALGAGTTEL
VQQGAGTAGEYTLLYTAKLVAAGWLIVCVLLLCAYAGQRSFAGTGTALRT
WCEASAA*
back to top

mRNA from alignment at P-littoralis_Contig712:29055..29627-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig712.1.1 ID=mRNA_P-littoralis_Contig712.1.1|Name=mRNA_P-littoralis_Contig712.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig712:29055..29627- (Pylaiella littoralis U1_48)
AACGGTGTTGGTACAGCACTGGGAGCTGGTACAACGAAGCTGGTACAGCA
GGGAGCTGGTACGCTGGTACAGCAGGGAGCTGGTACAGCGAAAGGGGGTA
CAACGGTGTTGGTACAGCACTGGGAGCTGGTACAACGGAGCTGGTACAGC
AGGGAGCTGGTACAGCGGAAGGGGGTACAACGGTGTTGGTACAGCACTGG
GAGCTGGCACAACGGAGCTGGTACAGCAGGGAGCTGGTACAGCTGGAGAG
TATACATTGCTGTACACAGCGAAGCTGGTGGCAGCGGGGTGGTTGATTGT
GTGTGTATTGTTATTGTGTGCATACGCTGGTCAGCGATCATTCGCGGGAA
CTGGTACAGCATTGAGGACATGGTGTGAAGCATCCGCGGCTTAGAGGTAC
GATCAAGTCTCATCATGGTGTGGGCATCTGGATTCTTCGTGTTCATGTAC
GAAGCGGATCACGAAAAGGGGGCCAGGCATCACCGTAGAGGCGGCGATGA
AAGGGTGCCGGAGCAGCACCAGCGAAATGGCGGCATGGTTTCTGGTGGAG
GTCGTGGGCCACATTGGTCCGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig712:29055..29627-

>mRNA_P-littoralis_Contig712.1.1 ID=mRNA_P-littoralis_Contig712.1.1|Name=mRNA_P-littoralis_Contig712.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig712:29055..29627- (Pylaiella littoralis U1_48)
AACGGTGTTGGTACAGCACTGGGAGCTGGTACAACGAAGCTGGTACAGCA
GGGAGCTGGTACGAACGGAGCTGGTACAGCAGGGAGCTGGTACAGCGGAA
GGGGGTACAACGGTGTTGGTACAGCACTGGGAGCTGGCACAACGGAGCTG
GTACAGCAGGGAGCTGGTACAGCTGGAGAGTATACATTGCTGTACACAGC
GAAGCTGGTGGCAGCGGGGTGGTTGATTGTGTGTGTATTGTTATTGTGTG
CATACGCTGGTCAGCGATCATTCGCGGGAACTGGTACAGCATTGAGGACA
TGGTGTGAAGCATCCGCGGCTTAG
back to top