mRNA_P-littoralis_Contig711.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig711.25.1
Unique NamemRNA_P-littoralis_Contig711.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig711.25.1 vs. uniprot
Match: A0A6H5JJJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ3_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.370e-61
Identity = 137/253 (54.15%), Postives = 153/253 (60.47%), Query Frame = 1 
Query:  331 FSETNPLTGQDPAALNAVRLEPKKPQAVALHGWQRTVGVDDDFDPTVAVNLGVPGTGLSTA----TQGATMGPGMGRAKQPRPHQDG---------------GGDPTAGGASMLPGAVVDLSNVKITREDKREAKSLRVQPAAPGAVPLPYPRVA-AVSETESS------------SGEDDGDXXXXXXXXXXXXXXXXXXXXDMSFLVDTAAGAFFGNKQTFGRVMETRIPSTVGEERLHNSLATYFGKSRS 993
            +SE NPLT  DP+       EPKKPQAVALHGWQRTVGVDDDFD T+ V LG PGTGL+TA      GA +GP MGR K  RP Q                  G PT+     L GAVVDL NVK+T+EDKREAKSLRVQPAA GA PLPYPRVA  VSET+S             +G   G                     DMSFLV+TA+GAFFG +QTFGR +E RIP+TVGEERLHNSLA Y G  R+
Sbjct:   23 YSEQNPLTSDDPSVYYTDAGEPKKPQAVALHGWQRTVGVDDDFDATIPVCLGAPGTGLATAKVPANGGAMLGPSMGRGKPLRPQQXXXXXXXXXXXXXXXXXAGQPTSAPGLGL-GAVVDLGNVKVTKEDKREAKSLRVQPAAEGAAPLPYPRVADVVSETDSXXXXXXXXXXXXPTGRQKG-------RQESQFETSSAASSDMSFLVNTASGAFFGGRQTFGRAIEPRIPATVGEERLHNSLAQYMGSRRT 267
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BLAST of mRNA_P-littoralis_Contig711.25.1 vs. uniprot
Match: D8LJA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.670e-11
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:  847 MSFLVDTAAGAFFGNKQTFGRVMETRIPSTVGEERLHNSLATYFGKSRS 993
            MSFLV+TA+GAFFG +QTFGR +E RIP+TVGEERLHNSLA Y G  R+
Sbjct:    1 MSFLVNTASGAFFGGRQTFGRAIEPRIPATVGEERLHNSLAQYMGGRRN 49
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig711.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJJ3_9PHAE2.370e-6154.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJA5_ECTSI1.670e-1173.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig711contigP-littoralis_Contig711:102808..108320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2002
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005350.1
Cds size1785
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791486.5496109-UTR-P-littoralis_Contig711:102807..1030231680791486.5496109-UTR-P-littoralis_Contig711:102807..103023Pylaiella littoralis U1_48UTRP-littoralis_Contig711 102808..103023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791486.5603046-CDS-P-littoralis_Contig711:103023..1043131680791486.5603046-CDS-P-littoralis_Contig711:103023..104313Pylaiella littoralis U1_48CDSP-littoralis_Contig711 103024..104313 +
1680791486.571197-CDS-P-littoralis_Contig711:107825..1083201680791486.571197-CDS-P-littoralis_Contig711:107825..108320Pylaiella littoralis U1_48CDSP-littoralis_Contig711 107826..108320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig711.25.1prot_P-littoralis_Contig711.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig711 103024..108320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig711.25.1

>prot_P-littoralis_Contig711.25.1 ID=prot_P-littoralis_Contig711.25.1|Name=mRNA_P-littoralis_Contig711.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=595bp
MNPGPQPAPLPPLSPPSSNKEREPSTPRAQELSPNSSLFSETNPLTGQDP
AALNAVRLEPKKPQAVALHGWQRTVGVDDDFDPTVAVNLGVPGTGLSTAT
QGATMGPGMGRAKQPRPHQDGGGDPTAGGASMLPGAVVDLSNVKITREDK
REAKSLRVQPAAPGAVPLPYPRVAAVSETESSSGEDDGDDENGEDHQGES
RSSSSVSSSDMSFLVDTAAGAFFGNKQTFGRVMETRIPSTVGEERLHNSL
ATYFGKSRSKSLTTGPGGGGGSGESVAGGGESHACSTAGAAAGAGAGAGG
GAAGSTSSAALSTVVLTASTTSNGGGGGGGGGGSGSSGSASASAPAVGKD
ATADYRERSNVASNNNSIFAQSKIVGSGGGEGEDAKGQEEEDHLNKPAIG
SAREAEEEEGVVEPGQRLPKCNCLLIWPWKILSGLVTLAGVVALVVVIAV
SPDAAASRRRLSLFSPQLLASESHGAHSPTSRASAGRPCVGYGGGGDGDG
FAVNFRASHSRRILSSTSRRGEAGGGARGAGAAGAAGAAGAAGAAADNDD
DESRVVFPVDRTRDAGAAVAGAVDGGGGGGGGGGDEDEMRAREPP
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mRNA from alignment at P-littoralis_Contig711:102808..108320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig711.25.1 ID=mRNA_P-littoralis_Contig711.25.1|Name=mRNA_P-littoralis_Contig711.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5513bp|location=Sequence derived from alignment at P-littoralis_Contig711:102808..108320+ (Pylaiella littoralis U1_48)
CGCAGGAAAATACAGGATACAGCACACAGAAGTATGTGCTGCGCTCCTGT
CGGTCGCCTGGAATAAGAGGAAGAACACACGCTGTGTGTTTGTCTGCCTG
GACCCTCGCAGCAGGGTTCGGCACAGCACTGAGCTTCTTCTTCCGAGATA
GAGGAGAAGAGCGAGCTGCTTCCGAGAGCCCACCCCCCCCCGTGTCGACA
ACACGAATCGACAATTATGAACCCCGGACCGCAACCCGCACCACTTCCTC
CGCTTTCTCCCCCTTCCTCGAACAAGGAAAGGGAGCCATCAACACCTCGC
GCTCAAGAGCTTTCTCCCAACAGTTCGCTCTTCAGCGAGACCAACCCGCT
CACCGGGCAAGACCCTGCGGCCCTCAACGCAGTGCGATTGGAGCCGAAGA
AGCCGCAGGCGGTCGCGCTTCACGGTTGGCAGAGGACTGTGGGCGTCGAC
GATGACTTCGATCCCACTGTTGCTGTCAACCTCGGGGTGCCGGGAACGGG
CCTCTCAACCGCGACGCAGGGCGCGACGATGGGGCCGGGCATGGGCAGAG
CGAAGCAGCCTCGACCGCATCAAGACGGAGGCGGAGATCCCACCGCCGGC
GGCGCCTCGATGCTGCCGGGCGCCGTGGTAGACCTCAGCAACGTGAAGAT
CACCCGCGAGGACAAGAGGGAGGCCAAGTCTCTGCGGGTGCAGCCGGCGG
CTCCAGGAGCGGTTCCCCTCCCGTACCCTCGGGTGGCCGCGGTTTCGGAA
ACAGAGAGCTCTTCGGGAGAGGATGACGGCGACGACGAGAACGGAGAAGA
CCATCAGGGGGAGAGCCGCAGCTCCTCGTCGGTGTCGTCCTCCGACATGA
GCTTCCTGGTCGACACCGCCGCTGGCGCCTTTTTCGGCAACAAGCAGACC
TTCGGCCGCGTTATGGAGACGAGAATCCCCTCCACCGTCGGCGAGGAACG
CCTCCACAACAGCCTCGCGACGTACTTCGGGAAGAGCAGGAGCAAGAGCC
TCACGACGGGCCCCGGTGGCGGTGGTGGCTCGGGGGAGTCGGTCGCCGGA
GGGGGTGAGAGCCACGCTTGTAGCACGGCCGGAGCGGCAGCAGGGGCAGG
AGCAGGAGCAGGGGGGGGTGCGGCGGGATCGACAAGTAGCGCGGCCTTGA
GCACGGTGGTGCTGACCGCCAGCACGACCTCGAACGGTGGCGGTGGCGGC
GGCGGCGGCGGTGGCAGCGGCAGCAGTGGCAGCGCTTCCGCGAGTGCTCC
TGCAGTTGGGAAAGACGCCACTGCCGACTACCGCGAGCGAAGTAACGTTG
CGAGCAATAATAACAGTATTTTTGCTCAGAGCAAAATTGTCGGAAGCGGC
GGCGGAGAGGGGGAGGACGCCAAAGGGCAGGAGGAGGAGGACCATCTGAA
CAAACCAGCTATTGGCAGCGCCCGTGAAGCGGAAGAGGAAGAGGGGGTAG
TGGAGCCCGGGCAGCGGCTCCCCAAGTGTAACTGCCTACTCATATGGCCT
TGGAAGGTGAGCAGCGCATAGCTTATGTCAACGCAGCGAGCAGTCGAGGT
TCCGGTTCACAACACCCTCCTGGTCTTCATACCAGAAACAACCGGTAAGA
CCCGCAAACCGGTTTACCGCAGTCTTCGAAGCACGTTTGTGCGTGTCTGA
TGCTGGTGTGATGGTAGTCCGCAATTAAAGCAGTGTTCATGCACGAGAGC
GAACTGCATCCAAATAAAAATATGGACAAATGCCTAATTTTCTCACCGTA
TTGCTCGACTGCTGTGTGATACTAACCAATCGACGCAAAGTACGAATTCG
TCATCTATTTTAGCACCATTATACTTCTCTACGCAGTACAACAACAGCAG
CTAGCTGTTACTTCTGAGCTTGCCAATATCATGGCAGTACTGGACTTGTA
TCGATAAACTTTGGCAGACCAAAAAATACCCACAATACGGCAGTACAGCT
GTACAGCTGTAACGGCACACTCCAGAAAAAAAAAATGAAGCGGTTTTAAG
TGGTGTGTGTGACAGCGAAGAGACGGGCAATACAAGAAAGCTGATGCACA
CAGCCAGATTTCGCGTACAAGCATAAATATCCTCCCAACTGGGAAGAATT
GAGAAACTCGCTGCAAAACGATTTCTTCAGCGTAAAGAACGACCTACGGG
CATCTTCCTATTGCACACCAACCAAGCTTCCTCTGCTTGGCGCTAGGTTT
AGGGTTGAGGTCAGGGTTAGAATTAGGCCGGTTGTGGCTGGTTATTGGTT
GGGCAAACCGATGACGCGTGTCTATCTCCAAAAAGAACGAAGAAATCAGC
GCAGCCAGCTTCTTAATGCTTCCCTACTGGGGAGGTATACACACAGCCAT
GGTGGTTGAGCAAGTCCAACACCGCACCATGTACCGTATTCCCCGAGACT
CTCTCCTTATTGCACGTTACAATTGCGTTACACGTGGACATGCAAGGCTG
TACCAGTTAGGAGTAAATAAACATGGCTCTGACGTAGAGCCTTCGGCCGG
TTCTGTTTGTGCGATGGCACTACCGTATGTATGTGCAGTTGTGCAGAGAA
TTGTGTGGGAGCTTATCCTGCCCCGTGAGCTGTGCGTGTGCTCCTCATCC
TGCGATGGTCGTCTAGGGCCGCGAGGCATCGAAAGGCTTTCACAAAAAAA
TTGCAGGCATCGATGACGTGAGCGTGAAGTCGAAATGGACACCACCTGCT
CGGACTCTATCGGTTCACTCTTTTGTTGCACAACCCAGGAAAACGCCCTC
TAACTTTTTTTCGAGCCAATCGATGCCTTGCGGCCTCAGATGACCGCCTC
GGGAGAAGGACCATACACACAGCTCGTGGTATGTGGCTATGGTATTGGTA
TGCCAATCCGTCGCCTCGAGCGAATGAGTCCACAGCAATACCAAAGCCAT
CGCCCGTGAGCTGCGTGAGTGGTCCTTGTGCTGCGGCAGTCATCTGAGGC
CGCGAGGAATCTAAAGCCTCGCAACAACAATTGTATGCCTCTCATCGTGA
AAGGCCTGGTGTGGGGTGTTCAAACTTTTCCAATAGCAGGTTTCTGATAG
GTGCAGGCCATCAGAAAAAAATTCCTTCTGATCGTTTGGGGCTATCGAAT
TTTTTTATCAAATATAGCGCCGTTTCTGATCACATAAAATGCCCGATCTC
TTGACCAATATATCTAAAAAGCTCTTTTTTGGTAGCGGCTTTTCGACACG
TAAACAACCCTATCCCCGTATTTCTATTTTCTGACCGATGGGGGCGATGA
GAAAATTATCAGCAAATTATTCAAAAAAAGGTGGTTTCCGACACGTGACA
TGGCTCATCTTCGTATGACGTTTGATCAGCAAATCCCTTCCTTTTCTGAC
AGCATCTGTCATAGTTTTCATTTTATTTTCACGAAACGAGTGGTCTCCAT
CCCATCAGTTTTGGACGCTAGTGTTCACCGTTCGGTGAAAGTTGTGTGGG
CGCGTTAACCGGGGTAACACAGAAAAAGAAGGTCAACACTGCTGTACGTT
TGGGGATTTCCGAACGGTGGTTCCTTGGGTGGCAGCTTCGTGTATACCAC
TACCACCCTCCCCCCCCCTTCCCCTCCGCTTTTCCTTTGGGACCGAATTT
GTTTTTGCACGCCGCACCCTGACGACCGTCAAACTCCCTCGACATGGCAC
GTGAAGTAAAGCCTGCTTCGCTCTCATGGCGGGGGTCTTGCTTGAGAAGC
TATGACGGCATTGATTGCTGGATCATTCGGCTTTACTTTATATTTTTTTC
AATCATGATCTATTTCATCCAGACTTTTTAGAAAAAAAAACGCCGCCTGC
CTGTGTGCTACTCTGACGCGCTCGCGCTGAATGTAGGTAGGCTGTGCGGC
AGTACAACCCTGGTGTGCGTTGTGAGATTCGACGCGTTTGGGGTGGCATT
CTTTTTGTTGGTCTTTTGATTCACAGTACTCGCTGGTGGTTGCGGACTAC
AAACAACGTGAAGCGTGTGGAGATCACTGCTGTTGTAGAGTATTCATACA
GAAACGTGGTTGAGAGGAATTATTTCCCTGGGCACGGCGCCTACCTCCCA
GGCATCATGGCGAGCGAGCTTGTCGGGCGATACCGTTCCCACTTCAGCAT
CAACAAGTGAAAAAACTGAGGTTGCCATAGGTCGCATGAGAAATACCACA
CGGGATTCTCTCGGACCCATTCGATTTTGTGAAAGCTTGATCTATTGCTC
CACAACTTCATACCAAAAGTTTATGAGCCACAACAATACAAAAAAACGAT
GTACGGTCTATCATGCAGCGATACCTTTTCGGAAATCTCTCTGTTTACTC
TCTCGATCTGAAGGTTCCATGATTTCAACACCGTTCAGTGACCCTTTTCT
GTGCGGCACGGACGTGACACCTTTTATAGTCGTTCAAGGGGATCCCGTGA
TATCTTATGCGACCTACAGCAGCAAGACACCCGTCTCTGATAGTCTAAAA
AGTCGAATCTTGCGTCTGATTCATTGACTGTTTTGATGGGATAGTGCCGG
AACCGACCGGAGGCTGTTCCTGTGTTGATGACTCATTTGTTGTTTTGGTG
TCACGAATGTGCCTCTCTAGGCACAAACAAAGCCTCCTCCTTGGCGATAA
TACGCCTCTCTCAGGCTCAAGCACGACTCTTCTTGGCACAAACAAAGCCT
CCTCCTTGGCAAAAACACGCCTCTCTCAGGCTCAATCACGACTCTTCTTG
GCACAATTCAGCCTCCTTATTGGCAAAAACACGCCTCTCCTCGACACGAA
AACGGCCCTCCTTCGTGATCGATCGGTGGAACCTCTTGTCATACTTGACG
CTCCCCCGCCCCCGCTACATGTTAGTCTTGTATTTTTCTGTCTGTCATGT
ACATACAACAGCGGCAGGCAGATTTTTTTGACTTGACTCCCGAGTCGAGG
AGCCTGTACCAAATGACTCGATGGCTTTGACACGCCCTCATCCGAAACGT
ACACGCGTCTGCACTTTCTGAAAAACTCGTGTCTTCTCACACCTGCGCGC
GTTCGTGCGTACGGGCAGATACTCTCGGGCTTGGTGACGCTGGCTGGAGT
TGTGGCGTTGGTGGTCGTGATCGCGGTTTCGCCAGACGCCGCGGCGAGTC
GAAGGAGGCTCTCGTTGTTCTCGCCGCAGCTGCTCGCGTCGGAGAGCCAC
GGAGCGCATTCTCCCACGAGCCGTGCGTCGGCGGGGAGACCCTGTGTAGG
CTACGGTGGGGGTGGCGATGGGGATGGCTTTGCTGTAAACTTCAGGGCCT
CTCACTCTCGGCGAATACTTTCGTCTACGAGCAGACGTGGGGAAGCCGGC
GGTGGTGCCCGTGGTGCCGGTGCTGCCGGTGCTGCTGGTGCCGCTGGTGC
CGCTGGTGCTGCTGCTGATAATGATGATGATGAATCCCGGGTAGTGTTTC
CGGTAGACCGCACCCGGGATGCTGGTGCTGCCGTGGCTGGTGCTGTTGAC
GGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGATGAGGATGAGATGCGCGC
GAGAGAACCACCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig711:102808..108320+

>mRNA_P-littoralis_Contig711.25.1 ID=mRNA_P-littoralis_Contig711.25.1|Name=mRNA_P-littoralis_Contig711.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1785bp|location=Sequence derived from alignment at P-littoralis_Contig711:102808..108320+ (Pylaiella littoralis U1_48)
ATGAACCCCGGACCGCAACCCGCACCACTTCCTCCGCTTTCTCCCCCTTC
CTCGAACAAGGAAAGGGAGCCATCAACACCTCGCGCTCAAGAGCTTTCTC
CCAACAGTTCGCTCTTCAGCGAGACCAACCCGCTCACCGGGCAAGACCCT
GCGGCCCTCAACGCAGTGCGATTGGAGCCGAAGAAGCCGCAGGCGGTCGC
GCTTCACGGTTGGCAGAGGACTGTGGGCGTCGACGATGACTTCGATCCCA
CTGTTGCTGTCAACCTCGGGGTGCCGGGAACGGGCCTCTCAACCGCGACG
CAGGGCGCGACGATGGGGCCGGGCATGGGCAGAGCGAAGCAGCCTCGACC
GCATCAAGACGGAGGCGGAGATCCCACCGCCGGCGGCGCCTCGATGCTGC
CGGGCGCCGTGGTAGACCTCAGCAACGTGAAGATCACCCGCGAGGACAAG
AGGGAGGCCAAGTCTCTGCGGGTGCAGCCGGCGGCTCCAGGAGCGGTTCC
CCTCCCGTACCCTCGGGTGGCCGCGGTTTCGGAAACAGAGAGCTCTTCGG
GAGAGGATGACGGCGACGACGAGAACGGAGAAGACCATCAGGGGGAGAGC
CGCAGCTCCTCGTCGGTGTCGTCCTCCGACATGAGCTTCCTGGTCGACAC
CGCCGCTGGCGCCTTTTTCGGCAACAAGCAGACCTTCGGCCGCGTTATGG
AGACGAGAATCCCCTCCACCGTCGGCGAGGAACGCCTCCACAACAGCCTC
GCGACGTACTTCGGGAAGAGCAGGAGCAAGAGCCTCACGACGGGCCCCGG
TGGCGGTGGTGGCTCGGGGGAGTCGGTCGCCGGAGGGGGTGAGAGCCACG
CTTGTAGCACGGCCGGAGCGGCAGCAGGGGCAGGAGCAGGAGCAGGGGGG
GGTGCGGCGGGATCGACAAGTAGCGCGGCCTTGAGCACGGTGGTGCTGAC
CGCCAGCACGACCTCGAACGGTGGCGGTGGCGGCGGCGGCGGCGGTGGCA
GCGGCAGCAGTGGCAGCGCTTCCGCGAGTGCTCCTGCAGTTGGGAAAGAC
GCCACTGCCGACTACCGCGAGCGAAGTAACGTTGCGAGCAATAATAACAG
TATTTTTGCTCAGAGCAAAATTGTCGGAAGCGGCGGCGGAGAGGGGGAGG
ACGCCAAAGGGCAGGAGGAGGAGGACCATCTGAACAAACCAGCTATTGGC
AGCGCCCGTGAAGCGGAAGAGGAAGAGGGGGTAGTGGAGCCCGGGCAGCG
GCTCCCCAAGTGTAACTGCCTACTCATATGGCCTTGGAAGATACTCTCGG
GCTTGGTGACGCTGGCTGGAGTTGTGGCGTTGGTGGTCGTGATCGCGGTT
TCGCCAGACGCCGCGGCGAGTCGAAGGAGGCTCTCGTTGTTCTCGCCGCA
GCTGCTCGCGTCGGAGAGCCACGGAGCGCATTCTCCCACGAGCCGTGCGT
CGGCGGGGAGACCCTGTGTAGGCTACGGTGGGGGTGGCGATGGGGATGGC
TTTGCTGTAAACTTCAGGGCCTCTCACTCTCGGCGAATACTTTCGTCTAC
GAGCAGACGTGGGGAAGCCGGCGGTGGTGCCCGTGGTGCCGGTGCTGCCG
GTGCTGCTGGTGCCGCTGGTGCCGCTGGTGCTGCTGCTGATAATGATGAT
GATGAATCCCGGGTAGTGTTTCCGGTAGACCGCACCCGGGATGCTGGTGC
TGCCGTGGCTGGTGCTGTTGACGGTGGTGGTGGTGGCGGCGGCGGCGGCG
GTGATGAGGATGAGATGCGCGCGAGAGAACCACCA
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