mRNA_P-littoralis_Contig708.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig708.37.1
Unique NamemRNA_P-littoralis_Contig708.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig708.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig708contigP-littoralis_Contig708:142548..143503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size958
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791476.7364213-UTR-P-littoralis_Contig708:142547..1429631680791476.7364213-UTR-P-littoralis_Contig708:142547..142963Pylaiella littoralis U1_48UTRP-littoralis_Contig708 142548..142963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791476.7502558-CDS-P-littoralis_Contig708:142963..1435031680791476.7502558-CDS-P-littoralis_Contig708:142963..143503Pylaiella littoralis U1_48CDSP-littoralis_Contig708 142964..143503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig708.37.1prot_P-littoralis_Contig708.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig708 142964..143503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig708.37.1

>prot_P-littoralis_Contig708.37.1 ID=prot_P-littoralis_Contig708.37.1|Name=mRNA_P-littoralis_Contig708.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MSSSTTIPVEPAAGSSAATVAKIQPAAVSTSSGKQVRDKQRRFSSVDPRA
GSFLGTSKNNPVTSMNQVGRQNVDKQSSSRTAKRIRKSSCLTVAPQAQHV
VSRMNVSNQDDDLNVSESNLTAPQYAVFQASALSRYPRYPTAINTLSKRV
HIPARVHDCPVSDVTVDTAADVPCISAKFL
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mRNA from alignment at P-littoralis_Contig708:142548..143503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig708.37.1 ID=mRNA_P-littoralis_Contig708.37.1|Name=mRNA_P-littoralis_Contig708.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=956bp|location=Sequence derived from alignment at P-littoralis_Contig708:142548..143503+ (Pylaiella littoralis U1_48)
AACTTATCTCCAGGAATCATCGGAACGGCACGGAGCCACCGAGCTGGCTC
ATGCACCTCCTTATGCCCTCCGGAGACGAACAGCTGCGTGCCTCTGTGGC
AACGCAAGCTACGGAGATCGCTCACTTAGCTTCTGCAGTCAAGACACTTC
AGCAGCAGCGAAAGACAACACGCCCGCGGAGCCGCAGCACCGACAAAGCG
GGAAGAAAGGACGGAGCACAGCGGGATGGAAAGCAGGCCAAAACGGGTAA
AACCAATTTTGGCCCATGCACCTACCCGGGGTGCCACCGCCCTGAAACCC
ACTCCACTGATCGCTGCCGTGTCCGTAAGGAAGACATAAACAGGGGTTAC
CTACGCCAGCCCACTACAAAATCGGATGAATGATGGGGCCCGGTTTGGGT
TCCCTCGCCCAAAGGGATGAGTAGCAGTACCACGATACCAGTAGAGCCAG
CAGCCGGTAGTTCAGCAGCAACAGTTGCGAAAATACAACCAGCAGCAGTT
TCAACTAGTAGTGGGAAACAAGTGAGGGATAAGCAACGCCGTTTTAGTAG
CGTTGACCCTCGGGCAGGCAGTTTTCTAGGAACATCAAAAAATAACCCGG
TCACTAGCATGAACCAGGTGGGAAGACAAAATGTTGACAAGCAGAGTAGC
AGTCGAACAGCGAAACGTATTCGTAAGTCAAGTTGCTTGACAGTAGCTCC
GCAAGCTCAACATGTTGTATCCCGAATGAATGTTTCTAATCAAGATGACG
ATTTGAATGTCTCTGAATCAAATTTGACTGCGCCACAGTACGCAGTATTC
CAGGCATCTGCGTTGAGTAGATATCCACGCTACCCAACTGCAATCAATAC
GTTATCGAAAAGGGTGCATATCCCTGCCCGAGTACATGATTGCCCCGTGT
CCGATGTGACCGTTGACACGGCTGCTGATGTGCCTTGCATATCCGCAAAA
TTTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig708:142548..143503+

>mRNA_P-littoralis_Contig708.37.1 ID=mRNA_P-littoralis_Contig708.37.1|Name=mRNA_P-littoralis_Contig708.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig708:142548..143503+ (Pylaiella littoralis U1_48)
ATGAGTAGCAGTACCACGATACCAGTAGAGCCAGCAGCCGGTAGTTCAGC
AGCAACAGTTGCGAAAATACAACCAGCAGCAGTTTCAACTAGTAGTGGGA
AACAAGTGAGGGATAAGCAACGCCGTTTTAGTAGCGTTGACCCTCGGGCA
GGCAGTTTTCTAGGAACATCAAAAAATAACCCGGTCACTAGCATGAACCA
GGTGGGAAGACAAAATGTTGACAAGCAGAGTAGCAGTCGAACAGCGAAAC
GTATTCGTAAGTCAAGTTGCTTGACAGTAGCTCCGCAAGCTCAACATGTT
GTATCCCGAATGAATGTTTCTAATCAAGATGACGATTTGAATGTCTCTGA
ATCAAATTTGACTGCGCCACAGTACGCAGTATTCCAGGCATCTGCGTTGA
GTAGATATCCACGCTACCCAACTGCAATCAATACGTTATCGAAAAGGGTG
CATATCCCTGCCCGAGTACATGATTGCCCCGTGTCCGATGTGACCGTTGA
CACGGCTGCTGATGTGCCTTGCATATCCGCAAAATTTTTG
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