mRNA_P-littoralis_Contig706.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig706.47.1
Unique NamemRNA_P-littoralis_Contig706.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig706.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig706contigP-littoralis_Contig706:119609..121106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791474.0474-CDS-P-littoralis_Contig706:119608..1196981680791474.0474-CDS-P-littoralis_Contig706:119608..119698Pylaiella littoralis U1_48CDSP-littoralis_Contig706 119609..119698 +
1680791474.059783-CDS-P-littoralis_Contig706:120905..1211061680791474.059783-CDS-P-littoralis_Contig706:120905..121106Pylaiella littoralis U1_48CDSP-littoralis_Contig706 120906..121106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig706.47.1prot_P-littoralis_Contig706.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig706 119609..121106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig706.47.1

>prot_P-littoralis_Contig706.47.1 ID=prot_P-littoralis_Contig706.47.1|Name=mRNA_P-littoralis_Contig706.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
RGREAQDTYNCCPFDAGFCGDIRHSRVINKVPFKKNLAAAEKANPLEACS
GSTTMADHATQLETVEEFTEDPEESPLISGCVDRGRSGTEDCGNGKT
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mRNA from alignment at P-littoralis_Contig706:119609..121106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig706.47.1 ID=mRNA_P-littoralis_Contig706.47.1|Name=mRNA_P-littoralis_Contig706.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1498bp|location=Sequence derived from alignment at P-littoralis_Contig706:119609..121106+ (Pylaiella littoralis U1_48)
CGGGGAAGAGAAGCACAAGATACTTACAACTGCTGTCCTTTCGATGCTGG
GTTTTGCGGTGACATTCGTCATTCCAGAGTGATCAATAAGGTGAGTGGGT
ACACCTCTGCTCTCTCTCTCTCTCTCTCTCTCTCGTGGTTTCCGAAAGGC
TCTTCTGAGAGAGGGCAAATACGAACACAGGACTGCTGCTGGTGCTGGTG
CTGGTGCTGCTACTGCTGGTGCTACTGAGTGTAGATCCATGTGGACTATC
ATCCACGATAAATATACCACTCAAACAGCTGGCTGTGAGTTGTCTCCAGT
GAGTGGCGGATATTCATTTATCATGTTCTGCTGTACGCTTGTCCAGCACT
CTTTTCTCGCAAGAATTCGTCAGAGTTTGGTGTGAATAGTACCTCCTGTA
GGCCAACGTCGCTTGTTCGCTGCAAGGGCCCACACCAACGACTACACTAC
AGCAGTACTTCTCCCTGCTCGTACGTGGGACGCGTTTTTCATTAGGGTTT
GTATCAATGTAACATGGTTGGATACGCATAAAATGTGATCGACAACAAAA
AGATGCTACAGAGTATACTTTGGAATACGTAGCCCAGGGCAAAATTATAC
CAGTATGTAACAAGATATCCGAGAACGGTGCTTCTTACTGATGTACAGTG
ACACTCGTATGCCCTGGTGACTGCAAGTACGCGGATCATTGTCGGACTGC
GTGCCGGCACAATCGATGCAGAGTGCATACGGCTTCGTGCGCATTCGCGT
CTCTCCTTTGAAGTTGACGACTCAAATACGACAGTGATAAACAGAGTGCA
AACACAATCGCCTCGAGTACTTTGAAGCGTAAGTTGAGATTTCCGGCCCT
TCGTCAGGACGCCTCAATCGTGAATCTTTTTGAAAGAATCTAGACCGGCG
CGGCCCATTCGCTGAAGTTTCGGATGGCGCCGATTTTGACAATAGTCCAG
CTTTGCCTACCACAGCAAATAGTTGGTTCATCGCGGCTTTTTCTAGGACC
TTGATGCAACTACACTCTTGTGCCCAAAACGATTGATACGGTAAGAAAGT
CTGGATGCGGTGAGAAAGTCGGGTGCGCTCAGCAATCCGAACAATCGCGC
ATCTACAGTAAGGTAACGTCGTAGCGTGTCTCTGCTAGGCAATGGCGAGA
ATGTACGGGAAAAAACTCGACGTAGAATGCCGCAACCACAAAACTGCTGT
GTTCCCGCTCTGTGGCTCTAGAGCACGAATGCCGCCTCCATTGTTGTCGT
TGGGTCCTGGTCAATCCCAATGTGCGCCCGATCGTTTCTGTGTCCAGGTG
CCTTTCAAGAAAAATCTGGCGGCGGCTGAGAAGGCAAACCCTCTGGAAGC
CTGCAGCGGCTCAACAACAATGGCTGACCATGCTACCCAACTCGAAACTG
TGGAAGAATTCACGGAAGACCCTGAAGAGTCGCCCTTGATTAGCGGTTGC
GTCGACCGCGGACGGTCTGGAACGGAAGACTGTGGAAATGGAAAGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig706:119609..121106+

>mRNA_P-littoralis_Contig706.47.1 ID=mRNA_P-littoralis_Contig706.47.1|Name=mRNA_P-littoralis_Contig706.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig706:119609..121106+ (Pylaiella littoralis U1_48)
CGGGGAAGAGAAGCACAAGATACTTACAACTGCTGTCCTTTCGATGCTGG
GTTTTGCGGTGACATTCGTCATTCCAGAGTGATCAATAAGGTGCCTTTCA
AGAAAAATCTGGCGGCGGCTGAGAAGGCAAACCCTCTGGAAGCCTGCAGC
GGCTCAACAACAATGGCTGACCATGCTACCCAACTCGAAACTGTGGAAGA
ATTCACGGAAGACCCTGAAGAGTCGCCCTTGATTAGCGGTTGCGTCGACC
GCGGACGGTCTGGAACGGAAGACTGTGGAAATGGAAAGACC
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