mRNA_P-littoralis_Contig701.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig701.3.1
Unique NamemRNA_P-littoralis_Contig701.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig701.3.1 vs. uniprot
Match: D8LSZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ0_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 2.660e-102
Identity = 164/214 (76.64%), Postives = 183/214 (85.51%), Query Frame = 1 
Query:  217 TMEEMRVIINNDMPGMYSRMQGEDDILKVLELEGAMELECERRDTDARVMIRNAIDRLEQQQRAIVEPSEQAFVAKVRGVEHERAQAASHIQEQAEEAAARERDIERMQEAVEKTQAEIENTVDAHIVEMPRVQNSIGLYANITGIKWNYETEGEITAGWLIPPETGAGARAREGDGRAVVQGFQFDAAGKDDFEVAHKLWDIIDGKTRAMVEA 858
            T+EEMR I+NNDMP +Y R  G DD+ +VLELE AME+ECERR+ DAR MIR+ ID LEQ+ RAIVEPSEQAFVA++R VEHERAQAASHIQEQAEEAAARERDIERMQ  VE TQ EIENTVDAH +EMPRVQN+IGLY NIT IKWNYETEGEI AGWL+PPE G G +    +G AVV+GFQFDAAGKDDFEVA+KLWD+IDGK RAMVEA
Sbjct:    8 TLEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERREMDARAMIRDTIDVLEQRHRAIVEPSEQAFVARIRVVEHERAQAASHIQEQAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAGVGMKGA--NGTAVVEGFQFDAAGKDDFEVANKLWDVIDGKARAMVEA 219
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BLAST of mRNA_P-littoralis_Contig701.3.1 vs. uniprot
Match: A0A7S4N5F9_9STRA (Kinetochore protein Spc24 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5F9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.490e-5
Identity = 32/86 (37.21%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:  601 EMPRVQNSIGLYANITGIKWNYETEGEITAGWLIPPETGAGARAREGDGRAVVQGFQFDAAGKDDFEVAHKLWDIIDGKTRAMVEA 858
            E+ +++  I LYANI+GIKW+Y+ EGEI  G +  P      R            F  D    D+F+VA+ LWD++DGK   +  A
Sbjct:  204 EVRKIKYQISLYANISGIKWDYD-EGEILKGEVNVPSKNQTRR------------FCIDPLDYDEFDVANALWDLMDGKEPTLTAA 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig701.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSZ0_ECTSI2.660e-10276.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4N5F9_9STRA5.490e-537.21Kinetochore protein Spc24 n=1 Tax=Odontella aurita... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig701contigP-littoralis_Contig701:2725..6855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr38049
Model size895
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.96e-05
EggNOG OGs28ST0@1|root,2QZGZ@2759|Eukaryota,2XHPR@2836|Bacillariophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001940.1
Cds size657
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791468.6818373-UTR-P-littoralis_Contig701:2724..27581680791468.6818373-UTR-P-littoralis_Contig701:2724..2758Pylaiella littoralis U1_48UTRP-littoralis_Contig701 2725..2758 -
1680791468.735567-UTR-P-littoralis_Contig701:6651..68551680791468.735567-UTR-P-littoralis_Contig701:6651..6855Pylaiella littoralis U1_48UTRP-littoralis_Contig701 6652..6855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791468.7019699-CDS-P-littoralis_Contig701:2758..30761680791468.7019699-CDS-P-littoralis_Contig701:2758..3076Pylaiella littoralis U1_48CDSP-littoralis_Contig701 2759..3076 -
1680791468.7134523-CDS-P-littoralis_Contig701:3596..37661680791468.7134523-CDS-P-littoralis_Contig701:3596..3766Pylaiella littoralis U1_48CDSP-littoralis_Contig701 3597..3766 -
1680791468.726278-CDS-P-littoralis_Contig701:6482..66511680791468.726278-CDS-P-littoralis_Contig701:6482..6651Pylaiella littoralis U1_48CDSP-littoralis_Contig701 6483..6651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig701.3.1prot_P-littoralis_Contig701.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig701 2759..6651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig701.3.1

>prot_P-littoralis_Contig701.3.1 ID=prot_P-littoralis_Contig701.3.1|Name=mRNA_P-littoralis_Contig701.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
MGSATMEEMRVIINNDMPGMYSRMQGEDDILKVLELEGAMELECERRDTD
ARVMIRNAIDRLEQQQRAIVEPSEQAFVAKVRGVEHERAQAASHIQEQAE
EAAARERDIERMQEAVEKTQAEIENTVDAHIVEMPRVQNSIGLYANITGI
KWNYETEGEITAGWLIPPETGAGARAREGDGRAVVQGFQFDAAGKDDFEV
AHKLWDIIDGKTRAMVEA*
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mRNA from alignment at P-littoralis_Contig701:2725..6855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig701.3.1 ID=mRNA_P-littoralis_Contig701.3.1|Name=mRNA_P-littoralis_Contig701.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4131bp|location=Sequence derived from alignment at P-littoralis_Contig701:2725..6855- (Pylaiella littoralis U1_48)
CAGAACAGATAAAGCTAGACGGTTTCGCGAGGCGTGCTGAGTCATCTCTG
TGGCACACAAATATTTGCGGGGATTGGGGAGGTTGGAGGAAGGGCCGGTG
AAGTGACTCTTACCGCAGTATCGACGTAGCAGTTTGTTTATCAACAGAGT
GGAGAAAACTCTGTTGAGGCACGAGTACCGGTACGTAGCAGCAACAGAGA
GAAGATGGGGTCTGCTACAATGGAAGAGATGAGGGTAATCATCAATAACG
ATATGCCAGGTATGTACAGCAGGATGCAGGGAGAGGACGACATTCTTAAG
GTACTTGAGCTGGAGGGCGCTATGGAACTGGAGTGTGAACGCCGCGACAC
GGACGCGAGGGTCATGATTCGCAGTGAGTGAGAAACGCGAGCGTTCACGA
GTCACTGACACAAGTCCAGCCAGTGTTGTGTGTGTGTGTGTTGTCATCCC
TTATTCTCTGGCACACTAGTCTGCACCCTGCGGTTCAAACTACAGGCTAG
GTCCATCGACGGGATCACACAGGAGGAAGGTCAACACAGGAGGAGTTACC
CCTACCTTCCTTCTGCGGTACATGCGTGAAATTTTACCTCGCGAGCAGGG
ATCCGTGGTCCATATCCTCGTCGGCGAAGCCGAATCTGCTTTTACTAACA
GCATAGCCGCTTTCAAAGCAGCAATGGAACACATTCATCGGGAATCGAAC
CCCCGTTCCTCTGCATCTAGTGGCTAACGAGGGGACCACTAGTCCACCGG
GGCGACCGGTGTGTGTGTGTGTGTGTTGTAATCCCTTTAATTGGACGCCA
CCCTAACCTGCACCTTTCGGGTAGGTCGACGTCCCAACTGGGGTCACACA
GGGGGAAGTCAACACAGGAGTTTTTTTTTGTTTTTTTTCTCCACTTCCCT
CTGCTGTGCTTGCCTTGTTTTGGTTGAGCTTTTATCGCGAGAAAGAGGAC
AGCGGTCCCTGTCCCTCGTCGATGGTGTGGTGTGTGTGTGTTGTCGTCCC
TTTATTTGGACGCCACTCTACACCTTTCGGGTAGGTCGACGCTCCAATTG
GGGTCACAAAGGGGGAAGTCAAAACAGGAGTTTTTTTTTTTTTTCTCCAC
TTCCCTCTGCGGTGCTTGCCTTTTTGGTTGAGCTTTTATCGCGAGAAAGG
GGACAGCAATCCCTTTCCCTCGTCGATGGTACGATCGACTTTTGTTTACT
CACGAATTAATCGCTCTCCACTTTCACGCGCATTGAGAAGAAAACCCAGA
TCGTGTTACTGCACTGGGATTCGAACTCACGCGTGAATGCCAGAAGGCCA
CGTAGATTACCAACTGAACCACCGGGGCTTGGGCGGGGAGCCAGTACTAG
TATTTAATTTTAGGTACTTCGAAGTATGATATCATACATGCATGTACCAC
GACAATGTACTGGTGTAGCTGTAAAGACAGTACGTAGCACGTACATTTAT
CTTTCACTTCTCTCTCTCCCTCTCGGCGCAACAACGGGTACCGCAATAGC
CGTGTAACTGCTGCATAAATGACATTTCTTTTATGATACCAGGTATCATA
TTTGTGTCCTGTACAGGTCGTTTGACGATATTTGATATCATATGCAGAGA
TGCTCTACTCGTAAGTTTTACGTACACACAGCAGATGCTGTCCCCATGTA
CCGACCGGTACCTATTTCCTGATTTCCTTTCGTATATCCGTTGCAGCGGC
AAAGGATTGCCCAAGATACATACTTTCTTGTCAAGAGGAGTGAACCAGGT
GGAGGTAAAAGTGGCGTTTTTTGCACCTGCTCTGCGGGCTAGTACGAGTT
TGAGATCGTGTTCCAGCTGACGGTAATTAAGGTTCAGCCACCGGCACACC
ACTACGGGGCCTAACGAAAAGGGCTAGCCAGTATCCCGGCCGAGGGCAAA
AAAGGGTGCCATCGGCAGCACCGCAAGAGGTCCGGCAGTGGTACTTATAC
TTTCAACCCCCGCCACTCTTCTTAAACGTATCTGTATCGTACCTGCTACG
GCATTGCACTACTGTAAGCGGTACCCGTTGTCCCTCGGCCAGGAGGCTGG
CGAGGTGGTCAACGTCACGGCAAACGCTGCCGTTTACAACTCTGTGGGTG
AGAGAGTTTCCTAATTTCAAAGGAGTCGCGCAAGTTGTTGGCCGTCCGCT
GATACCGTGATATTGCCCTCTTTGTGCATATTTCCCGCCAAAATAGGTGT
AGAAAATACTGACCTCCTCCTCTCCACGTGATATCCCGGGCAACTGTTGC
CTCTGCCTTGGGCCTCTGTGCCGGCGGGTGCTCGAGGATAAGATCGGAGT
CCACGTAGAGAGGCATGGATCCTTGTTTTGGGGTGCTGTGGACGCGGCAG
GTTTTTTGGCCGTGGAGGAGCACTGCTATTTACTGGAAAAAGTGCAGAAC
TGGCGCAGAGTACTGTAGCGGATGTAGCAATTCGTTGCATCCCGCAGTCA
CCACGTTTTTATTGAACGGCCTAGATGGTCACAACGAGTTGAAAAGCCTA
ATCTGGAAGAAGTGTAGACAGCAAATACAGCAGCAAGCGTCAGAGAACGT
GTCGGCCTTGTACGAAGATTACCACTTCAGGTTGAGGATGTCGTAAAAAC
GGCAAACGACATTTGTCTGATTTGCGTGTGCGCGTCTTACCACAAAGCAC
ATATGTAGAAACGACAGTTGTTTCATATTCACGCTGTGGCCACAGCAGCG
GTGGCAGCATTATCTCCAAGCTGTACAGTAGTCAATACAGTAAACACAGC
TTTTGCCAAATGAGCTTCACACACCACCAGATGACTGCCATACGTATGGT
ACGAGGTGGTCACGAACCCTCCACTTCACGAATTGACCAGTGTCGTCTCG
AAGGTAAGAACCAACTCTTTTCCGCAGCTACCGACGCAATCTGCCTGAAC
TTCTGCTATAAACAGTATAAGTACCACACCAGCTGCGCGCTTGTCGCCTG
AAGCGCGATGACGCAGGGCCACCCGACCGACGCCATCATAACCAGCGACC
TCGTACTCGATCGCGTGCGTGTGCTGCGCCATATTTGTGTGTGTCATGTG
TACATCCGCGTGTGCGTGATTGGTTTCTTCCCCTCGTAGACGCGATCGAC
CGGTTGGAGCAGCAACAGCGGGCTATCGTCGAACCGTCAGAACAGGCGTT
TGTGGCCAAGGTCAGAGGGGTGGAGCACGAGCGCGCGCAGGCAGCGTCTC
ACATTCAGGAGCAGGCGGAGGAGGCGGCGGCACGGGAGAGAGACATCGAG
CGTATGCAGGTACGTACGGCAATGCAGCTTTGGGTGTTCGTTCAAGGGTT
TTTCGTTTTTGCACTCTTCGACACACCTTGTTGCCCGCGTATGTTGCAAG
AAATGACCCCACTCTGCCGCTGTTAGCAACTGTACGTAGTTAGTCGGCGT
ATTCAGGTCTTCCTACGACTGTTGCCGCCGCTGCTGCTGTACATGCCGCG
AAAAAGGAATCCACGCAACAATTCTTGCCACTATTCTACTACTGTAATGA
GCAATTTTCCGCCCAGCAAACGTACACGGATGTTGAATAGGGAAAGGGTA
GGCAGCGCTGGAATTCGAGGAGTTGTTGATGACGGCACCGGCGCAAGTAT
AATGCATAACGCAGACCATACCAATCTACGGAAGAATACCATAACGGTCT
GTTGCAACGCAGTTTGACTCAATTCCAGGACACATCGGGTTTTCGTCGCT
GCCTCCTCGCCGCCCTGCTCCTAAACACCCTACTAATCACGATCACGCGT
ACTTGTTACACGTACGCCTGCCTCAACAGGAGGCCGTTGAGAAAACACAA
GCGGAAATCGAGAACACCGTGGACGCGCACATCGTGGAGATGCCGCGCGT
TCAAAACTCGATCGGACTTTACGCGAACATCACCGGCATCAAGTGGAACT
ACGAGACGGAGGGGGAAATCACAGCCGGCTGGCTCATCCCGCCGGAGACT
GGGGCAGGGGCAAGGGCGAGGGAGGGAGACGGTAGAGCAGTCGTCCAGGG
TTTCCAGTTTGACGCTGCGGGAAAGGACGACTTTGAGGTCGCGCACAAGC
TCTGGGACATTATCGATGGGAAGACGCGTGCCATGGTAGAGGCGTAGATA
GTTGTACGACGCGCGCAGAGGACGTCGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig701:2725..6855-

>mRNA_P-littoralis_Contig701.3.1 ID=mRNA_P-littoralis_Contig701.3.1|Name=mRNA_P-littoralis_Contig701.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig701:2725..6855- (Pylaiella littoralis U1_48)
ATGGGGTCTGCTACAATGGAAGAGATGAGGGTAATCATCAATAACGATAT
GCCAGGTATGTACAGCAGGATGCAGGGAGAGGACGACATTCTTAAGGTAC
TTGAGCTGGAGGGCGCTATGGAACTGGAGTGTGAACGCCGCGACACGGAC
GCGAGGGTCATGATTCGCAACGCGATCGACCGGTTGGAGCAGCAACAGCG
GGCTATCGTCGAACCGTCAGAACAGGCGTTTGTGGCCAAGGTCAGAGGGG
TGGAGCACGAGCGCGCGCAGGCAGCGTCTCACATTCAGGAGCAGGCGGAG
GAGGCGGCGGCACGGGAGAGAGACATCGAGCGTATGCAGGAGGCCGTTGA
GAAAACACAAGCGGAAATCGAGAACACCGTGGACGCGCACATCGTGGAGA
TGCCGCGCGTTCAAAACTCGATCGGACTTTACGCGAACATCACCGGCATC
AAGTGGAACTACGAGACGGAGGGGGAAATCACAGCCGGCTGGCTCATCCC
GCCGGAGACTGGGGCAGGGGCAAGGGCGAGGGAGGGAGACGGTAGAGCAG
TCGTCCAGGGTTTCCAGTTTGACGCTGCGGGAAAGGACGACTTTGAGGTC
GCGCACAAGCTCTGGGACATTATCGATGGGAAGACGCGTGCCATGGTAGA
GGCGTAG
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