mRNA_P-littoralis_Contig7.95.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.95.1
Unique NamemRNA_P-littoralis_Contig7.95.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: D7FRZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRZ6_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.800e-42
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 VILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVSAKNIQETLRKSAEYQAAHPANGSG-ATVPEGDGTAFGAQ 338
            +I MC TPVIQFTVQA SAYLRNT+V++FFNVQVR++RFFRYFFENNVFIIA L L + S IYLSCRPVDSPVSA+NIQETLRKSAEYQ+AH  NG G A V + +G   G+Q
Sbjct:  365 IIFMCGTPVIQFTVQAFSAYLRNTDVTNFFNVQVRYVRFFRYFFENNVFIIALLILTVFSGIYLSCRPVDSPVSAQNIQETLRKSAEYQSAHSTNGGGGAAVSDENGNPVGSQ 477
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: A0A835Z009_9STRA (LMBR1-like membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z009_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.410e-21
Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 3 
Query:    3 VILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVSAKNIQETLRK----SAEYQA 272
            +ILMC   VIQF+VQA SAYL + +++SFFNVQV+++RFFRYF+ N+VF+ A L + LLS  +L  RP D+P S K ++E LRK    +A+Y+A
Sbjct:  431 IILMCVPAVIQFSVQAFSAYLVSADINSFFNVQVKYLRFFRYFYVNDVFVFALLIITLLSTAFLGVRPSDTPASTKQVREALRKLGAHTADYEA 524
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: H6WB98_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB98_VAULI)

HSP 1 Score: 82.0 bits (201), Expect = 1.450e-15
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 3 
Query:    3 VILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVSAKNIQETL 248
            +IL+C    IQF VQA S+Y  + E+++  NVQVR++RFF++F+ NNVF+ A L L +LS+IYL+ RP DS   AK ++ETL
Sbjct:  433 IILLCVPAAIQFCVQAFSSYAVSAEINNILNVQVRYLRFFQFFYANNVFVYALLILTVLSSIYLAVRPSDSSNKAKIVRETL 514
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: A0A7S4SSD3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SSD3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.330e-14
Identity = 35/82 (42.68%), Postives = 60/82 (73.17%), Query Frame = 3 
Query:    6 ILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVSAKNIQETLR 251
            IL+C+ PV+QF+  A + Y RNT V   F  Q+R+++FFR+F+ NNVF+ + + LA+L++++L+CRP DS  ++  +++ LR
Sbjct:  464 ILLCSLPVVQFSTDAFADYARNTTVYQVFGTQIRYLKFFRWFWINNVFVYSLVILAMLTSLFLACRPRDSSANSLELRDRLR 545
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: A0A7S2W916_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W916_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.510e-12
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 3 
Query:    6 ILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVSAKNIQETLRK 254
            IL+C  PV+QF  QA  +Y R T + S   VQVR+++FFRYFFE+NVFI   L L  L+  YLS    D P S  +++  +R+
Sbjct:  541 ILLCAIPVVQFCTQAFDSYARYTTIGSLLGVQVRYLKFFRYFFEDNVFIYIILVLMGLTLAYLSVYSKDKPPSVLDLKSKVRR 623
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: A0A6U6IXR7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IXR7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.410e-10
Identity = 30/82 (36.59%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:    6 ILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVSAKNIQETLR 251
            +L+C  P++QF V A  +Y     V+  F  Q+ +++FF YF+ NNVF+   LA ++L+A+YL CRP D+   +  +++ L+
Sbjct:  464 VLLCALPIVQFCVTAFDSYAIYATVNQVFGTQIHYLKFFNYFWTNNVFVYMLLAFSVLTALYLGCRPRDTSADSLELRDRLK 545
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: A0A7S0CAM7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAM7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.260e-10
Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:    6 ILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVSAKNIQETLRKSAE 263
            +L+C+ PV+QF+V A + Y R T +   F VQ+++++FFR+FFE  +F    L + + +A YL  +PVD P +   +++ L K+ E
Sbjct:  219 VLLCSVPVVQFSVNAFADYARYTNIIQTFGVQIQYLQFFRFFFEAQIFENVLLLMTIWTAGYLILKPVDKPTNTLELRDRLLKNEE 304
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: K0TCE0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TCE0_THAOC)

HSP 1 Score: 66.2 bits (160), Expect = 4.770e-10
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 3 
Query:    6 ILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVS 224
            +L+C  PV+QF+V A   Y R T ++   NVQ+++++FF ++++  VF  AFLA+ LL+ IYL CRP D   S
Sbjct:  401 VLLCALPVVQFSVSAFQDYARYTTINQVINVQLKYLKFFGWWWQKKVFEYAFLAIILLTCIYLGCRPRDQSAS 473
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: A0A024UQP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQP0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.110e-9
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 3 
Query:    6 ILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVSAKNIQETLRKSAEYQAA 275
            IL+C  PV+QF+ QA S Y+R T + +   +Q+R+M+ F  F+ +NVF+ A LA+ LL+ +YL+ RP D+  S+K   + +RK  E Q A
Sbjct:  445 ILLCCIPVVQFSNQAFSDYVRLTTIQTMMGIQLRYMKGFSVFWVHNVFLYAILAIVLLTTLYLAVRPRDT--SSKT--DAIRKKIEKQVA 530
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BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Match: A0A2R5G8J8_9STRA (LIMR family protein DDB_G0293610 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8J8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.870e-9
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 3 
Query:    6 ILMCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAFLALALLSAIYLSCRPVDSPVS-----AKNIQETLRKSAEYQ 269
            IL+C  P+IQF    LS Y+  TE+ + F  Q+ +M FFR+F+ENNVFIIA LA+AL+++I+L   P    +      +K I++   ++AE +
Sbjct:  448 ILLCIAPLIQFIGATLSEYVVLTEMDAIFGQQITYMLFFRWFYENNVFIIAMLAIALITSIWLIFFPQSKHIRQAKFLSKKIEQFKLQTAERE 540
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FRZ6_ECTSI1.800e-4273.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z009_9STRA7.410e-2153.19LMBR1-like membrane protein n=1 Tax=Tribonema minu... [more]
H6WB98_VAULI1.450e-1551.22Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A7S4SSD3_9STRA8.330e-1442.68Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2W916_9STRA6.510e-1245.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U6IXR7_9STRA1.410e-1036.59Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S0CAM7_9STRA3.260e-1037.21Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0TCE0_THAOC4.770e-1043.84Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A024UQP0_9STRA3.110e-942.22Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A2R5G8J8_9STRA5.870e-940.86LIMR family protein DDB_G0293610 n=1 Tax=Hondaea f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:463890..465818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRZ6
PFAMsLMBR1
Model size407
Max annot lvl2759|Eukaryota
KEGG koko:K14617
KEGG Pathwayko04977,map04977
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0044464,GO:0055044,GO:0071944
Exons3
Evalue1.1e-43
EggNOG OGs28H7Y@1|root,2QPKQ@2759|Eukaryota
Ec32 ortholog descriptionLMBR1-like membrane protein
Ec32 orthologEc-12_007050.1
DescriptionLMBR1-like membrane protein
Cds size330
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791452.1593862-UTR-P-littoralis_Contig7:463889..4639551680791452.1593862-UTR-P-littoralis_Contig7:463889..463955Pylaiella littoralis U1_48UTRP-littoralis_Contig7 463890..463955 -
1680791452.213256-UTR-P-littoralis_Contig7:465807..4658181680791452.213256-UTR-P-littoralis_Contig7:465807..465818Pylaiella littoralis U1_48UTRP-littoralis_Contig7 465808..465818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791452.1770694-CDS-P-littoralis_Contig7:463955..4641021680791452.1770694-CDS-P-littoralis_Contig7:463955..464102Pylaiella littoralis U1_48CDSP-littoralis_Contig7 463956..464102 -
1680791452.188267-CDS-P-littoralis_Contig7:465250..4653431680791452.188267-CDS-P-littoralis_Contig7:465250..465343Pylaiella littoralis U1_48CDSP-littoralis_Contig7 465251..465343 -
1680791452.200217-CDS-P-littoralis_Contig7:465717..4658071680791452.200217-CDS-P-littoralis_Contig7:465717..465807Pylaiella littoralis U1_48CDSP-littoralis_Contig7 465718..465807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.95.1prot_P-littoralis_Contig7.95.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 463956..465807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.95.1

>prot_P-littoralis_Contig7.95.1 ID=prot_P-littoralis_Contig7.95.1|Name=mRNA_P-littoralis_Contig7.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MCTTPVIQFTVQALSAYLRNTEVSSFFNVQVRFMRFFRYFFENNVFIIAF
LALALLSAIYLSCRPVDSPVSAKNIQETLRKSAEYQAAHPANGSGATVPE
GDGTAFGAQ*
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mRNA from alignment at P-littoralis_Contig7:463890..465818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.95.1 ID=mRNA_P-littoralis_Contig7.95.1|Name=mRNA_P-littoralis_Contig7.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1929bp|location=Sequence derived from alignment at P-littoralis_Contig7:463890..465818- (Pylaiella littoralis U1_48)
GGGTTATCCTCATGTGCACGACGCCGGTTATCCAGTTCACCGTGCAGGCC
CTCTCCGCCTACCTGCGCAACACGGAAGTGTCCAGCTTCTTTAACGTCCA
GGTGCGTACAGCAGCAGCGCGCCAGTATTTTCTCTGTCGTTGTTGTTGTT
GGTTTGGTGTGTTGTTTGCTGCTGGCCAAGTGCCGCACAGGCTTGCTTCG
TCGTTCCCCTTCCTAAAAGGAGATTCGAATCTCCACTCCATCACCGTCAA
ATACATCGGGTCCACCCTGACTGAAAGTAGTTGGTGTGTGATGGGTCATC
CGTGACTTTTGTCCTTCCCCTCGCCATGTCCTTGTTGCTATTTTGCTTGC
CGGCACGTGGCTGTCATTTTGTGAAATGGATTCCTCGCGGCTGTTGTTTT
ATTTTTGTTTAAAGTCGTGCTCGTTTCGCTTCCAACAATACTGTACCGAA
ACAACAAAAATAAATGCGTTTGCAGGTTCGCTTCATGCGTTTCTTCAGAT
ACTTCTTCGAGAACAACGTCTTCATCATCGCGTTCCTCGCGCTCGCACTC
TTGTCCGCAATCTATCTGGTGAGATGACGGGATGATGCGACGGTGTGGTG
GTTTGAAGAGGAGACGAAATGCACACATCGGTCGCCGCTTCCTGCCTGCG
CTGGCAATACATTTGTTCACCTTTAGCAGTACTTCGGGTCTACTGAAGAA
CTGTAATTAGAAACCGCTGCACCGCAAATCCACGAGTTTATCCTTCGATG
TCGAGAAGGTCTCCAGCGCGGTTGCGCCTGCCAGACCTCTCCTTGCGCAG
GCGGTGTTGTTTGCTGACTGTTTCGAGAGGTGGGGGCAGGGAGGTTCCTG
GGTAATTTGTGCCGCATGCTGTAGACCTTGATTGAGATCACTATTCACAC
GCGCCTTCTTGGCTTTGTGATGTTCAGCAGTAGCACCTTCCTCGTAGGGG
CACCGCTGTTCCTGGTTCATTCAGCCAAATTTTCGCCGCCGTACGAGTGT
TCCCCTTGGCGCGCTTGGCATCGCCCACGGATTCACGCTCGCTTTGTTGT
CTCGAGTGTTATATAAAGGCTCATCCATCAGATTAATCAGTCAGCGCTGA
TGAAGTAGTCAGATGGACTAGCCTAAAAATAGTAAAACTCACGAAGAACT
GGTATTGATTTGGGCTCGTAGCCTCCCGTTGAGAGTATAAAAACAATAAC
AGATATGTTCGCTGCCGTATGGACGTGATGTTTGCTATTCCTTACCCCCG
AGGCAAAGAAAAACTGGTCCTTGTGTTTTACGTGTTGTTCCTACCGTTTC
AGAATGCTGCCGTACAAGTGCCCTTCAGGTTTGCTTGGTCAAACGCAACG
CAGGGTTGCAGGGTCCCTTGTGACTTTTTTTTTTGAAGTCCTGGTGTGCT
GGTTTGGTGCGCCCAAGGTTTGCGGACGAGTTAGGCAAGGCGCGCACGGT
TCCAATTGAAGGCCGTGTTCATGAAGACTCCACAAGGATACAATTACGCA
CAAGCTAGGAAAAAGTGTTTATTCCCGTTGTTTATTACTGTCGTTTGATC
CCGTCGTTTATTCTTGTTTTTCGTGCACGCGAACGTGTTTGTCATTACCT
GTCCTAACCCCCTCCCCCCCAACCCCCTTCCTTCTCGCCCCCGCCCCCAC
TCCTTTTTCGACTTTGACTGGTCTTGTCACCAAACCGGAACCGAACGAAA
AAAATCGCTCCTTCAGTCTTGCAGGCCGGTGGACAGCCCAGTTAGTGCGA
AAAATATCCAGGAGACGCTTAGGAAATCGGCCGAGTATCAGGCGGCGCAC
CCGGCAAACGGCAGCGGGGCCACGGTGCCAGAAGGGGACGGCACCGCGTT
CGGCGCCCAATGACGTGCGAGCGCCTGTCTGCCGCCCCTGTGTTGAGAGG
AGCGAGGGACGGGAGGGAAGGTGGCAACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:463890..465818-

>mRNA_P-littoralis_Contig7.95.1 ID=mRNA_P-littoralis_Contig7.95.1|Name=mRNA_P-littoralis_Contig7.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig7:463890..465818- (Pylaiella littoralis U1_48)
ATGTGCACGACGCCGGTTATCCAGTTCACCGTGCAGGCCCTCTCCGCCTA
CCTGCGCAACACGGAAGTGTCCAGCTTCTTTAACGTCCAGGTTCGCTTCA
TGCGTTTCTTCAGATACTTCTTCGAGAACAACGTCTTCATCATCGCGTTC
CTCGCGCTCGCACTCTTGTCCGCAATCTATCTGTCTTGCAGGCCGGTGGA
CAGCCCAGTTAGTGCGAAAAATATCCAGGAGACGCTTAGGAAATCGGCCG
AGTATCAGGCGGCGCACCCGGCAAACGGCAGCGGGGCCACGGTGCCAGAA
GGGGACGGCACCGCGTTCGGCGCCCAATGA
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