mRNA_P-littoralis_Contig7.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.82.1
Unique NamemRNA_P-littoralis_Contig7.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:394639..396113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size465
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.6108832-UTR-P-littoralis_Contig7:394638..3946821680791446.6108832-UTR-P-littoralis_Contig7:394638..394682Pylaiella littoralis U1_48UTRP-littoralis_Contig7 394639..394682 -
1680791446.647445-UTR-P-littoralis_Contig7:396067..3961131680791446.647445-UTR-P-littoralis_Contig7:396067..396113Pylaiella littoralis U1_48UTRP-littoralis_Contig7 396068..396113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.6213217-CDS-P-littoralis_Contig7:394682..3948861680791446.6213217-CDS-P-littoralis_Contig7:394682..394886Pylaiella littoralis U1_48CDSP-littoralis_Contig7 394683..394886 -
1680791446.638269-CDS-P-littoralis_Contig7:395896..3960671680791446.638269-CDS-P-littoralis_Contig7:395896..396067Pylaiella littoralis U1_48CDSP-littoralis_Contig7 395897..396067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.82.1prot_P-littoralis_Contig7.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 394683..396067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.82.1

>prot_P-littoralis_Contig7.82.1 ID=prot_P-littoralis_Contig7.82.1|Name=mRNA_P-littoralis_Contig7.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MRHDITSERCSVDVHETVRYGIHSFFRRNVETPHAVRCQLVGMKPAAHRR
HHRKLQQKKTAAAAVLITRQIGPWRESLMPQQATTAAVLFAGSGSDPGRA
AQTRIVHYCCSGVSRYSRSINVDQ*
back to top

mRNA from alignment at P-littoralis_Contig7:394639..396113-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.82.1 ID=mRNA_P-littoralis_Contig7.82.1|Name=mRNA_P-littoralis_Contig7.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1475bp|location=Sequence derived from alignment at P-littoralis_Contig7:394639..396113- (Pylaiella littoralis U1_48)
TTTCGGCATGTGAGGCGGCGGAATGGCATGATCATGTGATAGCGGAATGC
GGCATGACATCACATCTGAAAGGTGTTCCGTGGATGTGCACGAGACTGTC
AGATACGGAATACATTCTTTTTTCAGGAGAAATGTAGAAACTCCACACGC
TGTACGTTGTCAACTGGTTGGCATGAAGCCAGCTGCACACCGAAGGCACC
ATCGCAAGCTGCAGCAGGTACGAGCTGGCGTTCATGCTCAATCGTGTGTT
TGGTTTCATCGACTTGCAGCAGAACTCACCAAAATCTGCAGAAAATTCAA
AAATTCAAACGCTCCGTCGAAGTTTGTGTTTGAACCGATTTTGCCGCGAG
GAGGCCACTTCAAGAGAGTACTGCTGCTGGACAGATTGACTGGATGGCAC
GAAGATCGGCTTGGCCGTCGCGCGTGTCTTTGAGGAGCATTCGCAATTAC
ATACATGAACGGGCTGCAAAACACGCTACTCGCACGAAGTGGCGGACACG
CCACCATGCCACCATTGACCGTATTTAAGCGGCGGAATTTCACTGATGCT
CATGAAAAAGAAAAAATAGTTTTCTACTGTTGTATACTCAGTATAAAAGT
TCAGCCCAGTAGTAGTTGAGAAGCAGTGTGCGTTGGAGGGCTGCTTCTCA
AATAACTGCGTTAAGCCGTGTGCGTTGCTGTTTGGTGCAGCGCTGCTGCT
GCAGCAGAACAGCGCTGTGGTGGTGTTCCGCCAGCACAACAAACATAAAC
GCCTCTCATGATTTTTCACCAAAAAGGGACACCGAAAATAACGCGCCTCT
GACAAGATAGCTGTGCGCACAGGACACGGGCTGCGGTGAACCTAGCAGCA
GTGGTCAGATGCTATTTACTTCATCAATTCAAGCCCTTGGTCGCAACGAT
CTGTGCGGAACTAGTGCCAAAGTGTTGCAAATGTGGCCATTATCTCGGGC
ACACACAGACACACATAGACAGACACATAAACCTCAAAAATTAAATGAAG
GCACCCCGTCTCCGACTTTTTTTTTTTATTATTCGCACATACATTCACAC
CCTCCGCACATCACGAAAGTCGGTATGAATTCGAAGGAACTACACTTCGC
TTCGCTCGTGGCCTGATTCTCAATACGAGTTTGAAATGAGAAAAATACAC
CCACCGGAGACCGGACTCCACGGGATGTGTGTTGGATTAATTCATCACGA
CCACTGCTGCTGTGCTCGACTTTTCAGAAGAAGACCGCTGCAGCTGCTGT
ATTAATTACTCGTCAAATCGGACCTTGGCGAGAAAGCCTGATGCCACAAC
AGGCGACGACAGCAGCCGTGTTGTTTGCCGGGTCAGGGAGCGACCCAGGG
AGAGCCGCACAAACGAGAATCGTACACTACTGCTGCTCCGGAGTATCGCG
GTATTCGCGCTCGATCAACGTCGACCAATAATCCGGAAACTGATCCGGGC
AAAAGCTGCCAAAATAACAACCAGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig7:394639..396113-

>mRNA_P-littoralis_Contig7.82.1 ID=mRNA_P-littoralis_Contig7.82.1|Name=mRNA_P-littoralis_Contig7.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig7:394639..396113- (Pylaiella littoralis U1_48)
ATGCGGCATGACATCACATCTGAAAGGTGTTCCGTGGATGTGCACGAGAC
TGTCAGATACGGAATACATTCTTTTTTCAGGAGAAATGTAGAAACTCCAC
ACGCTGTACGTTGTCAACTGGTTGGCATGAAGCCAGCTGCACACCGAAGG
CACCATCGCAAGCTGCAGCAGAAGAAGACCGCTGCAGCTGCTGTATTAAT
TACTCGTCAAATCGGACCTTGGCGAGAAAGCCTGATGCCACAACAGGCGA
CGACAGCAGCCGTGTTGTTTGCCGGGTCAGGGAGCGACCCAGGGAGAGCC
GCACAAACGAGAATCGTACACTACTGCTGCTCCGGAGTATCGCGGTATTC
GCGCTCGATCAACGTCGACCAATAA
back to top