mRNA_P-littoralis_Contig7.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.60.1
Unique NamemRNA_P-littoralis_Contig7.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:271153..271657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size451
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.5413318-UTR-P-littoralis_Contig7:271152..2712911680791446.5413318-UTR-P-littoralis_Contig7:271152..271291Pylaiella littoralis U1_48UTRP-littoralis_Contig7 271153..271291 -
1680791446.5798504-UTR-P-littoralis_Contig7:271579..2716571680791446.5798504-UTR-P-littoralis_Contig7:271579..271657Pylaiella littoralis U1_48UTRP-littoralis_Contig7 271580..271657 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.555915-CDS-P-littoralis_Contig7:271291..2714201680791446.555915-CDS-P-littoralis_Contig7:271291..271420Pylaiella littoralis U1_48CDSP-littoralis_Contig7 271292..271420 -
1680791446.5686057-CDS-P-littoralis_Contig7:271474..2715791680791446.5686057-CDS-P-littoralis_Contig7:271474..271579Pylaiella littoralis U1_48CDSP-littoralis_Contig7 271475..271579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.60.1prot_P-littoralis_Contig7.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 271292..271579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.60.1

>prot_P-littoralis_Contig7.60.1 ID=prot_P-littoralis_Contig7.60.1|Name=mRNA_P-littoralis_Contig7.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MKVTKLNSFHADVFMSGSDILRFGVIHGQASAGFARLDPGPMLARGRPRR
RRCRHRHRRMQARPGTPRGVFKTKLAN*
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mRNA from alignment at P-littoralis_Contig7:271153..271657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.60.1 ID=mRNA_P-littoralis_Contig7.60.1|Name=mRNA_P-littoralis_Contig7.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=505bp|location=Sequence derived from alignment at P-littoralis_Contig7:271153..271657- (Pylaiella littoralis U1_48)
GAAGAGGCCGAGATCAACGCCGCTCGCAACAACCTGGTCGGGCTGACCGA
ATTCATCAAGGACGACGCTCTCAAGTTCATGAAGGTGACGAAGCTGAACT
CCTTCCACGCAGATGTTTTCATGTCAGGATCGGATATCCTCCGCTTTGGT
GTGATCCACGGCCAGGCCTCCGCAGGCTTCGCCCTCTTCCCGCCGGGAGT
TTTCGTGTCCCGGTGCGGCCACTAACCGTAGGAAAGCAGGCTAGATCCAG
GGCCCATGCTTGCCCGTGGTAGGCCCCGCCGCCGCCGCTGCCGCCACCGC
CACCGCCGTATGCAAGCAAGACCTGGGACCCCCCGGGGCGTGTTCAAGAC
TAAGTTGGCGAATTGAAACATACGATGGCATGTGTTACCGTACCGCTCCC
TCCTACGCCCGCAGAAACGACCCAGCTGTCAGAACCAAATGAAAGTTAAA
ACTCCTGCAGTGATTGGTTAACGGTAACTGGTTTTTGTTGCGTATTGCGG
CGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:271153..271657-

>mRNA_P-littoralis_Contig7.60.1 ID=mRNA_P-littoralis_Contig7.60.1|Name=mRNA_P-littoralis_Contig7.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig7:271153..271657- (Pylaiella littoralis U1_48)
ATGAAGGTGACGAAGCTGAACTCCTTCCACGCAGATGTTTTCATGTCAGG
ATCGGATATCCTCCGCTTTGGTGTGATCCACGGCCAGGCCTCCGCAGGCT
TCGCCAGGCTAGATCCAGGGCCCATGCTTGCCCGTGGTAGGCCCCGCCGC
CGCCGCTGCCGCCACCGCCACCGCCGTATGCAAGCAAGACCTGGGACCCC
CCGGGGCGTGTTCAAGACTAAGTTGGCGAATTGA
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