mRNA_P-littoralis_Contig7.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.25.1
Unique NamemRNA_P-littoralis_Contig7.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.25.1 vs. uniprot
Match: D7G1P7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P7_ECTSI)

HSP 1 Score: 657 bits (1695), Expect = 4.450e-225
Identity = 487/756 (64.42%), Postives = 542/756 (71.69%), Query Frame = 1 
Query:    1 DSSPFDPPGPYRDEHTAGGSRFKELLARAKGEPGPPPRPK--AKPRRILPPEGAPDYDDESQWQEQAIGSPDVPDPPLRQEMPGLDLGPELDLGGGLPVEGEAGISGGSRFSRMMNQARQNDDREEAGMAPRASPRSPQEVAKRAAQAAMGPAPVSKEEKERAIRAAVERQQKVMSKARGIDLDDPNLEGAQLARKKALSRAQAESQAGGYVPSSSAADDYLNALKADSQKKQRDIQAKLSGKPLPPTEKPPLSASLPVDTA-ADAPHEQSQPLPSGEEYDSVKPQKRTAASWSIQNKADVYMASLKGIKVDLAEDNPYLKTQQSPEELPPQRLARPPPXXXXXXLGPQMSYADKLKLAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSRSD----KQAQGQTTA----VSVKAVD-----------------APKRLLEQEVPESALLGEDAARAKMMKVMDLLTEHKTAGLVGVERVSELRRSLVDTREVLRSETYGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQAPRATPTTSPENVETLRRCSALLQAHVHSSLAGQDLQALVEGLASCLTIVTAQVVNGIAAGTSGGSGQGAPLGQAPGAANGGDAVPDYVAGVQSVGGVLSDMGMDKKPASFMPEAGNADGNGAAGWTGGSLGEDGKAIASKALGYLLKHRGGKGYGRGRVKGGEAEAMVAALAEVTEIMQDEMVEE 2184
            DS+P  PP PYR+EHT GG+RFKELLARA G+  P       AKPRR LPPEGAPDYDD++QW+EQAIGSPDVPDPPLR+ MPGLDLGPELD GGG   E                    NDDR+EAGMAPRASPRSPQEVAKRAA A    APVSKEEKERAI+AAVERQQK+M+KARGIDLDDP LEGA+LARKKALSRAQAE+QAGGYVPSSSAADDYLN+LKADSQKKQ++ QAKL G+PLPP E P LSAS P +TA +D P + + PL SGE+Y+ VKPQKRTAASWSIQNKAD YMASLKGIKV+LA+DNPYLK  +S  E P Q + RPP XXX   LGPQMSYA+K+KLAK                               XXXXX    + + S     KQAQ Q  A    V  K+V                  A +RLLEQ++P   L+ E  ++AKM+K+MDLLTEHKTAGL G +RVSELR SLVD RE LR+ETYG S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             E+   LRRCSALLQAHVHS LAGQDLQALVEGLAS LTIVTAQVV G A                    +    VP Y  G+QSVGG LSDMG+ KKPASF+PE G  DG+  AGWTGGSLGE+ KA ASKALGYLLKHRGGKGYGRG++ G +AEAMVAALAEVTEIM++EMVEE
Sbjct:   37 DSNPLGPPPPYREEHTPGGTRFKELLARANGQGAPXXXXXXXAKPRRALPPEGAPDYDDDNQWEEQAIGSPDVPDPPLRENMPGLDLGPELDYGGG--GEAXXXXXXXXXXXXXXXXXXXNDDRQEAGMAPRASPRSPQEVAKRAAAAQ---APVSKEEKERAIKAAVERQQKMMAKARGIDLDDPTLEGAELARKKALSRAQAEAQAGGYVPSSSAADDYLNSLKADSQKKQKETQAKLRGEPLPPREGPLLSASPPTETATSDVPDKSAAPLSSGEDYERVKPQKRTAASWSIQNKADQYMASLKGIKVELADDNPYLK--ESLVEEPRQPVRRPPXXXXKPPLGPQMSYAEKMKLAKGAKAAGTATAAAPSSNVVAAPVATLPPATEAXXXXXPSSGSPALSYAEKLKQAQAQKAAAGNGVFPKSVPXXXXXXXXXXXXXXXAPASRRLLEQDMPSGGLVDEGDSQAKMVKLMDLLTEHKTAGLEGEDRVSELRHSLVDAREALRAETYGRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------EDAAILRRCSALLQAHVHSGLAGQDLQALVEGLASSLTIVTAQVVTGTAXXXXXXXXXXXXXXXXXXXXDD-TGVPAYAGGIQSVGGALSDMGVAKKPASFLPEEGEGDGS--AGWTGGSLGEEEKAAASKALGYLLKHRGGKGYGRGKMTGAQAEAMVAALAEVTEIMEEEMVEE 771
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1P7_ECTSI4.450e-22564.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:111042..114354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2187
Hectar predicted targeting categoryother localisation
Exons4
Cds size2187
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791448.408812-CDS-P-littoralis_Contig7:111041..1116551680791448.408812-CDS-P-littoralis_Contig7:111041..111655Pylaiella littoralis U1_48CDSP-littoralis_Contig7 111042..111655 +
1680791448.4217916-CDS-P-littoralis_Contig7:112037..1122211680791448.4217916-CDS-P-littoralis_Contig7:112037..112221Pylaiella littoralis U1_48CDSP-littoralis_Contig7 112038..112221 +
1680791448.43538-CDS-P-littoralis_Contig7:112541..1130721680791448.43538-CDS-P-littoralis_Contig7:112541..113072Pylaiella littoralis U1_48CDSP-littoralis_Contig7 112542..113072 +
1680791448.4458737-CDS-P-littoralis_Contig7:113496..1143541680791448.4458737-CDS-P-littoralis_Contig7:113496..114354Pylaiella littoralis U1_48CDSP-littoralis_Contig7 113497..114354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.25.1prot_P-littoralis_Contig7.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 111042..114354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.25.1

>prot_P-littoralis_Contig7.25.1 ID=prot_P-littoralis_Contig7.25.1|Name=mRNA_P-littoralis_Contig7.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=729bp
DSSPFDPPGPYRDEHTAGGSRFKELLARAKGEPGPPPRPKAKPRRILPPE
GAPDYDDESQWQEQAIGSPDVPDPPLRQEMPGLDLGPELDLGGGLPVEGE
AGISGGSRFSRMMNQARQNDDREEAGMAPRASPRSPQEVAKRAAQAAMGP
APVSKEEKERAIRAAVERQQKVMSKARGIDLDDPNLEGAQLARKKALSRA
QAESQAGGYVPSSSAADDYLNALKADSQKKQRDIQAKLSGKPLPPTEKPP
LSASLPVDTAADAPHEQSQPLPSGEEYDSVKPQKRTAASWSIQNKADVYM
ASLKGIKVDLAEDNPYLKTQQSPEELPPQRLARPPPPPPAPPLGPQMSYA
DKLKLAKEAKASGAAVSPAAAAAPAAVATAVPSPPAVPQAPPAPPPPARS
RSDKQAQGQTTAVSVKAVDAPKRLLEQEVPESALLGEDAARAKMMKVMDL
LTEHKTAGLVGVERVSELRRSLVDTREVLRSETYGSSGGGGAAASTTPPS
PPGSSPPPPPPPQQQQQQQQQQRQQQQQQPPSRVGGPPPAAQAPRATPTT
SPENVETLRRCSALLQAHVHSSLAGQDLQALVEGLASCLTIVTAQVVNGI
AAGTSGGSGQGAPLGQAPGAANGGDAVPDYVAGVQSVGGVLSDMGMDKKP
ASFMPEAGNADGNGAAGWTGGSLGEDGKAIASKALGYLLKHRGGKGYGRG
RVKGGEAEAMVAALAEVTEIMQDEMVEE*
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mRNA from alignment at P-littoralis_Contig7:111042..114354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.25.1 ID=mRNA_P-littoralis_Contig7.25.1|Name=mRNA_P-littoralis_Contig7.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3313bp|location=Sequence derived from alignment at P-littoralis_Contig7:111042..114354+ (Pylaiella littoralis U1_48)
GACAGCAGCCCCTTCGACCCCCCGGGGCCGTACCGAGACGAGCACACCGC
AGGCGGCAGCCGGTTCAAAGAGCTTCTCGCTCGGGCCAAAGGCGAGCCGG
GCCCCCCGCCGCGGCCCAAGGCCAAACCTCGCCGCATCCTCCCGCCAGAA
GGCGCCCCCGACTACGACGACGAAAGTCAGTGGCAGGAGCAGGCGATCGG
CTCCCCGGACGTCCCGGACCCGCCACTCCGGCAAGAGATGCCGGGGCTGG
ACCTTGGTCCCGAGCTGGACCTCGGCGGGGGGCTGCCTGTGGAGGGGGAG
GCCGGCATCAGCGGTGGGAGCCGGTTCTCGCGGATGATGAACCAGGCCCG
GCAGAACGACGACCGGGAGGAGGCCGGGATGGCGCCGAGGGCGAGCCCCC
GCTCGCCGCAGGAGGTGGCCAAGCGGGCCGCGCAGGCGGCGATGGGACCG
GCTCCGGTGAGCAAGGAGGAGAAGGAGAGGGCCATCAGGGCGGCGGTGGA
GCGGCAGCAGAAAGTCATGTCCAAGGCGAGGGGGATCGACCTAGACGACC
CGAACCTGGAGGGTGCCCAGCTAGCCAGGAAGAAAGCCCTGAGCCGAGCG
CAGGCGGAGTCACAGTGAGTTTTTCTCTGCATCATGCACCACACGCTGCC
TTACTTGTGGATTGTTGTGGTACAAATCTACTGAAATGCGAACTCCTGAG
GCGGCGACATCGTGTGATAGCATGGTTTCCGGTGTGTTGTTTTCCTGTAT
TGGAACGGCATTCGCCGCTGTGCTTGCCGGCGGTGTTTTCAAGAAGTTGC
GAGGCGATGCCCTCGCTTTGGGGGCTCGTTGTCGCTTCCGGGGGTTTTAC
ACAGGTTGCCTCGTATATGCCAGGTATGCACACGCGAGCACACGCGACAC
GCTTTGTGCTGAATGTTTGACTTGACCGTTCGTTGTCCCCTTCTCCCGAC
ACACTCGTGATTTATCGCCTTTTACTCTCGATGCCAACTAAACAAGGGCC
GGCGGGTACGTGCCGAGCTCTAGCGCCGCTGACGACTACCTCAACGCTCT
CAAGGCCGATTCTCAAAAGAAACAGAGGGACATACAGGCCAAGCTGTCAG
GGAAACCCCTCCCTCCCACAGAGAAACCACCTCTGTCGGCGTCCCTGCCG
GTCGATACGGCTGCAGATGCGCCGCACGAGGTAATACCGGCACACCAGGG
TCGAGTTTTTGTAAACATGAGTATACGTATGTCTCATGAGAGCCGAAAAA
TAATCGTGATCGATTATCGAAATATCTTGGGTTTTTCCCTGTGTGTTTTC
GTAGGTTACGCTCCCCCCCCGCGCCGATTCGTAGCGGTCGGTCTCCCTCT
GTTATTGGTTGTCGGTTCGAACGGTCCGGGTCGGCCCGTCTACCGTTCGT
TGTTCCCCACTCACTTACTTTTGTCTTTGGGTTTTCTTTTCCGACCCTTT
GATGTTGTCGCTCTTCCCACCCCACCCGGTCCCACCGCCTCTACGTGCAG
CAATCCCAGCCCCTTCCGTCGGGCGAAGAATACGATTCGGTCAAGCCGCA
GAAGCGCACGGCCGCCTCGTGGAGCATCCAAAACAAGGCGGACGTCTACA
TGGCTTCCCTGAAGGGTATCAAGGTCGATCTCGCCGAAGATAATCCGTAC
CTTAAAACGCAACAGTCGCCGGAAGAGCTTCCGCCGCAGCGGCTGGCGCG
GCCACCGCCCCCTCCGCCCGCGCCCCCTCTTGGACCCCAGATGAGCTACG
CGGATAAGCTCAAGCTTGCCAAGGAGGCCAAAGCTTCGGGAGCCGCCGTT
TCTCCTGCTGCTGCTGCTGCTCCTGCGGCGGTGGCTACTGCTGTGCCTAG
CCCCCCCGCGGTACCTCAGGCGCCGCCAGCCCCTCCGCCGCCGGCCCGTT
CTCGTTCGGACAAGCAGGCGCAGGGGCAAACGACTGCTGTCAGTGTCAAG
GCCGTCGACGCGCCGAAGAGGCTCTTGGAGCAAGAAGTACCCGAGAGCGC
TTTATTGGGAGAAGACGCCGCACGGGCGAAGGTGAGAGCGGCAGCGGGCA
AGATCACTGCTGTGTTGGGGTTTGGGTTTAGGTCTCGATGCTGTGTTGGG
TTTGGGTTTGGGCGTCGACGACAATCGAGGTCTTCGCTTCTTTGTCGATA
GCTTGTTTTTAGAGTTTCAACGGTGATTGCATGTTTTGCTCCGTTGTGTC
GGAAGGAGGTGATCATGCGAAGGCAGTAGGATCGCTCTCTATGGGGCACT
CAGTTTTCCTGAAAATCGTCGTTCCTGTGTCGGAAGGAGGGCAAGCATGA
CAACCGCACGCAACAGCATCTTTATCTTATCCACTGTTGCTCTGTACTAC
TACGCTGTACACGGTTTGTACCGACTTGTCGACGTCCCTCTTCGTGTCGT
TCACCCCTTCGCTGTGATTGCTTCGTCGAAATGGCATGACCTCCCCCAAA
ATTAGATGATGAAGGTGATGGACCTGCTGACCGAGCACAAGACGGCGGGC
CTCGTCGGTGTGGAACGCGTCTCTGAGTTGCGCAGATCCCTTGTCGACAC
TCGCGAAGTGCTTCGGTCTGAGACCTACGGAAGTTCGGGGGGCGGGGGGG
CGGCGGCTTCGACCACCCCTCCATCACCACCTGGGTCGTCGCCGCCGCCG
CCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCA
GCAACAACAGCAACCGCCATCACGAGTAGGAGGCCCCCCTCCAGCAGCAC
AGGCGCCACGGGCAACACCGACGACGTCCCCAGAGAACGTCGAGACTCTG
CGCCGCTGCAGCGCCCTTCTGCAGGCGCACGTGCACTCCAGCCTCGCGGG
CCAGGATCTCCAGGCTCTGGTGGAGGGGCTGGCGTCCTGTCTCACGATCG
TCACGGCTCAGGTCGTGAATGGAATCGCGGCGGGGACCAGTGGCGGTTCT
GGTCAAGGCGCGCCGCTAGGCCAAGCACCGGGGGCGGCGAACGGCGGCGA
TGCGGTGCCGGATTACGTAGCGGGGGTGCAGTCGGTGGGAGGGGTCTTGT
CGGACATGGGGATGGACAAGAAGCCCGCGTCGTTCATGCCTGAGGCGGGG
AATGCTGACGGAAACGGGGCTGCAGGGTGGACGGGGGGAAGCTTAGGGGA
AGACGGGAAAGCGATTGCCTCAAAGGCGCTGGGCTACTTGCTCAAGCACC
GCGGAGGCAAGGGGTACGGGCGCGGGAGAGTCAAGGGGGGCGAGGCGGAG
GCCATGGTGGCGGCGCTCGCGGAAGTGACCGAGATCATGCAGGACGAGAT
GGTCGAGGAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:111042..114354+

>mRNA_P-littoralis_Contig7.25.1 ID=mRNA_P-littoralis_Contig7.25.1|Name=mRNA_P-littoralis_Contig7.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2187bp|location=Sequence derived from alignment at P-littoralis_Contig7:111042..114354+ (Pylaiella littoralis U1_48)
GACAGCAGCCCCTTCGACCCCCCGGGGCCGTACCGAGACGAGCACACCGC
AGGCGGCAGCCGGTTCAAAGAGCTTCTCGCTCGGGCCAAAGGCGAGCCGG
GCCCCCCGCCGCGGCCCAAGGCCAAACCTCGCCGCATCCTCCCGCCAGAA
GGCGCCCCCGACTACGACGACGAAAGTCAGTGGCAGGAGCAGGCGATCGG
CTCCCCGGACGTCCCGGACCCGCCACTCCGGCAAGAGATGCCGGGGCTGG
ACCTTGGTCCCGAGCTGGACCTCGGCGGGGGGCTGCCTGTGGAGGGGGAG
GCCGGCATCAGCGGTGGGAGCCGGTTCTCGCGGATGATGAACCAGGCCCG
GCAGAACGACGACCGGGAGGAGGCCGGGATGGCGCCGAGGGCGAGCCCCC
GCTCGCCGCAGGAGGTGGCCAAGCGGGCCGCGCAGGCGGCGATGGGACCG
GCTCCGGTGAGCAAGGAGGAGAAGGAGAGGGCCATCAGGGCGGCGGTGGA
GCGGCAGCAGAAAGTCATGTCCAAGGCGAGGGGGATCGACCTAGACGACC
CGAACCTGGAGGGTGCCCAGCTAGCCAGGAAGAAAGCCCTGAGCCGAGCG
CAGGCGGAGTCACAGGCCGGCGGGTACGTGCCGAGCTCTAGCGCCGCTGA
CGACTACCTCAACGCTCTCAAGGCCGATTCTCAAAAGAAACAGAGGGACA
TACAGGCCAAGCTGTCAGGGAAACCCCTCCCTCCCACAGAGAAACCACCT
CTGTCGGCGTCCCTGCCGGTCGATACGGCTGCAGATGCGCCGCACGAGCA
ATCCCAGCCCCTTCCGTCGGGCGAAGAATACGATTCGGTCAAGCCGCAGA
AGCGCACGGCCGCCTCGTGGAGCATCCAAAACAAGGCGGACGTCTACATG
GCTTCCCTGAAGGGTATCAAGGTCGATCTCGCCGAAGATAATCCGTACCT
TAAAACGCAACAGTCGCCGGAAGAGCTTCCGCCGCAGCGGCTGGCGCGGC
CACCGCCCCCTCCGCCCGCGCCCCCTCTTGGACCCCAGATGAGCTACGCG
GATAAGCTCAAGCTTGCCAAGGAGGCCAAAGCTTCGGGAGCCGCCGTTTC
TCCTGCTGCTGCTGCTGCTCCTGCGGCGGTGGCTACTGCTGTGCCTAGCC
CCCCCGCGGTACCTCAGGCGCCGCCAGCCCCTCCGCCGCCGGCCCGTTCT
CGTTCGGACAAGCAGGCGCAGGGGCAAACGACTGCTGTCAGTGTCAAGGC
CGTCGACGCGCCGAAGAGGCTCTTGGAGCAAGAAGTACCCGAGAGCGCTT
TATTGGGAGAAGACGCCGCACGGGCGAAGATGATGAAGGTGATGGACCTG
CTGACCGAGCACAAGACGGCGGGCCTCGTCGGTGTGGAACGCGTCTCTGA
GTTGCGCAGATCCCTTGTCGACACTCGCGAAGTGCTTCGGTCTGAGACCT
ACGGAAGTTCGGGGGGCGGGGGGGCGGCGGCTTCGACCACCCCTCCATCA
CCACCTGGGTCGTCGCCGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGGCAGCAGCAACAACAGCAACCGCCATCACGAG
TAGGAGGCCCCCCTCCAGCAGCACAGGCGCCACGGGCAACACCGACGACG
TCCCCAGAGAACGTCGAGACTCTGCGCCGCTGCAGCGCCCTTCTGCAGGC
GCACGTGCACTCCAGCCTCGCGGGCCAGGATCTCCAGGCTCTGGTGGAGG
GGCTGGCGTCCTGTCTCACGATCGTCACGGCTCAGGTCGTGAATGGAATC
GCGGCGGGGACCAGTGGCGGTTCTGGTCAAGGCGCGCCGCTAGGCCAAGC
ACCGGGGGCGGCGAACGGCGGCGATGCGGTGCCGGATTACGTAGCGGGGG
TGCAGTCGGTGGGAGGGGTCTTGTCGGACATGGGGATGGACAAGAAGCCC
GCGTCGTTCATGCCTGAGGCGGGGAATGCTGACGGAAACGGGGCTGCAGG
GTGGACGGGGGGAAGCTTAGGGGAAGACGGGAAAGCGATTGCCTCAAAGG
CGCTGGGCTACTTGCTCAAGCACCGCGGAGGCAAGGGGTACGGGCGCGGG
AGAGTCAAGGGGGGCGAGGCGGAGGCCATGGTGGCGGCGCTCGCGGAAGT
GACCGAGATCATGCAGGACGAGATGGTCGAGGAGTGA
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