mRNA_P-littoralis_Contig7.232.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.232.1
Unique NamemRNA_P-littoralis_Contig7.232.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.232.1 vs. uniprot
Match: A0A6H5JM23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM23_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.040e-18
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 MPAKEKGATCDTCRDSERGCSWTPDGLELLCNLCADEPRRSVQRCRNSSELRGFGQFRCASSWGCDC 201
            +PA E GA CD C D +RGCSWTPDGLELLCN CAD PRR V   R   ELRG+GQF   S+  C+C
Sbjct:  285 VPAGE-GAKCDACHDDKRGCSWTPDGLELLCNYCADAPRREVGDYR---ELRGYGQFTWVSACDCNC 347
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BLAST of mRNA_P-littoralis_Contig7.232.1 vs. uniprot
Match: D7FPS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS6_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.400e-12
Identity = 29/37 (78.38%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   16 KGATCDTCRDSERGCSWTPDGLELLCNLCADEPRRSV 126
            KGA CD C D  RGCSWTPDGLELLCN CAD PRR V
Sbjct:  330 KGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRREV 366
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BLAST of mRNA_P-littoralis_Contig7.232.1 vs. uniprot
Match: D7FU97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU97_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.780e-12
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   16 KGATCDTCRDSERGCSWTPDGLELLCNLCADEPRRSVQR 132
            KGA CD C D  RGCSWTPDGLELLCN CAD PRR  +R
Sbjct:  304 KGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRRERKR 342
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JM23_9PHAE1.040e-1862.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS6_ECTSI1.400e-1278.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU97_ECTSI1.780e-1274.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:907935..908273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791456.5882218-CDS-P-littoralis_Contig7:907934..9082731680791456.5882218-CDS-P-littoralis_Contig7:907934..908273Pylaiella littoralis U1_48CDSP-littoralis_Contig7 907935..908273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.232.1prot_P-littoralis_Contig7.232.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 907935..908273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.232.1

>prot_P-littoralis_Contig7.232.1 ID=prot_P-littoralis_Contig7.232.1|Name=mRNA_P-littoralis_Contig7.232.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MPAKEKGATCDTCRDSERGCSWTPDGLELLCNLCADEPRRSVQRCRNSSE
LRGFGQFRCASSWGCDCEGIVADGEQSARQPVLAMPVSSAAPPPFLSSPL
LATESPRRPGVAP
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mRNA from alignment at P-littoralis_Contig7:907935..908273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.232.1 ID=mRNA_P-littoralis_Contig7.232.1|Name=mRNA_P-littoralis_Contig7.232.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig7:907935..908273+ (Pylaiella littoralis U1_48)
ATGCCCGCGAAGGAGAAGGGTGCGACGTGCGACACGTGCAGGGACAGCGA
GCGCGGGTGCAGTTGGACGCCTGACGGCCTCGAACTGTTGTGCAACCTCT
GCGCGGATGAACCTCGTCGCAGCGTACAGCGCTGCCGCAACAGCAGCGAG
CTGCGCGGCTTTGGCCAGTTCAGGTGCGCGAGCTCTTGGGGCTGCGACTG
CGAGGGGATCGTGGCTGACGGTGAGCAATCAGCTCGGCAGCCGGTGCTAG
CGATGCCAGTCAGCTCGGCCGCTCCCCCCCCCTTCCTCTCCTCCCCTTTG
CTCGCCACCGAATCCCCGAGACGGCCGGGGGTGGCGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:907935..908273+

>mRNA_P-littoralis_Contig7.232.1 ID=mRNA_P-littoralis_Contig7.232.1|Name=mRNA_P-littoralis_Contig7.232.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig7:907935..908273+ (Pylaiella littoralis U1_48)
ATGCCCGCGAAGGAGAAGGGTGCGACGTGCGACACGTGCAGGGACAGCGA
GCGCGGGTGCAGTTGGACGCCTGACGGCCTCGAACTGTTGTGCAACCTCT
GCGCGGATGAACCTCGTCGCAGCGTACAGCGCTGCCGCAACAGCAGCGAG
CTGCGCGGCTTTGGCCAGTTCAGGTGCGCGAGCTCTTGGGGCTGCGACTG
CGAGGGGATCGTGGCTGACGGTGAGCAATCAGCTCGGCAGCCGGTGCTAG
CGATGCCAGTCAGCTCGGCCGCTCCCCCCCCCTTCCTCTCCTCCCCTTTG
CTCGCCACCGAATCCCCGAGACGGCCGGGGGTGGCGCCG
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