mRNA_P-littoralis_Contig698.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig698.37.1
Unique NamemRNA_P-littoralis_Contig698.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig698.37.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.560e-35
Identity = 60/112 (53.57%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:   94 WENNHGVFSHCAGARSRDGKTFKNATVASGDIVGKRCLCWDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKEAAQPCA 429
            W N H V+  CAGA + DG  +KNAT+A+G+IVG+ C C+D +  V  DI  GCTG I+ GE VVKDW DPPLHL C+KR WR  +D  +++KK  +D+GTT +KE++QP A
Sbjct:  110 WLNIHAVWKLCAGATTSDGGKYKNATLATGEIVGRPCSCFDPEKNVD-DIKEGCTGDIQEGEYVVKDWTDPPLHLHCAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSA 220
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BLAST of mRNA_P-littoralis_Contig698.37.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.310e-35
Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:   94 WENNHGVFSHCAGARSRDGKTFKNATVASGDIVGKRCLCWDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKEAAQPCA 429
            W N H  ++ C GA++ DG+ +KNAT+A+GDIVG+ C C +  + V +DI  GCTG+I+ G+ VVKDW+DPPLHL C+KR WR  +D  +  K++ +D+GTT  KE+AQP A
Sbjct:  110 WLNIHACWTICCGAKTSDGEKYKNATLATGDIVGRACKCSNPASDV-EDITHGCTGEIEEGDYVVKDWIDPPLHLHCAKRLWRAKVDEILTSKQNLKDIGTTAQKESAQPSA 220
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BLAST of mRNA_P-littoralis_Contig698.37.1 vs. uniprot
Match: A0A6H5K6X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X3_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.530e-28
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:   82 FLAVWENNHGVFSHCAGARSRDGKTFKNAT---VASGDIVGKRCLCWDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKEAAQPCA 429
            F A W N H  +  C GA++ DG+ +KNAT   +A+G+IVG+ C C D +  V +DI  G TG ++ G  VVK W DPPL L C+KR WR  +D  +  K++ +D+GTT +KE+AQP A
Sbjct:   10 FNAEWLNLHACWPTCCGAKTSDGEKYKNATFATLATGEIVGRACKCSDPETNV-EDITDGYTGYMEEGAYVVKGWSDPPLPLHCAKRLWRAKVDEILACKQNLKDIGTTAEKESAQPSA 127
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BLAST of mRNA_P-littoralis_Contig698.37.1 vs. uniprot
Match: D7FZU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.290e-23
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:  100 NNHGVFSHCAGARSRDGKTFKNATVASGDIVGKRCLCWDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKE 411
            N H V  HC  A++  GK  KNAT  +   +GK C+  DE N ++ D+ TGCTG I  G+LV+KDW DPPLH  C++R W++++   ++ KK  +++GTT ++E
Sbjct:   12 NVHAVEIHCVLAKTSGGKLLKNATPTTKKRIGKSCVRADENN-IADDLQTGCTGIISEGDLVIKDW-DPPLHFYCARRLWKESVTQTLKAKKIIKEIGTTEEEE 113
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BLAST of mRNA_P-littoralis_Contig698.37.1 vs. uniprot
Match: D7G1C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C6_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.170e-21
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:  211 WDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKEAAQPCAAVPAALKDF*GRLHK-RGVDSSRHPD 504
            +D +   + D+++GCTG I  G+LVVKDW +PPLHL+C+KREWRK +   +++K+  +DL +T  +EAAQP A VPA L  F  R    +G   S  P+
Sbjct:   57 YDPEQPAAIDLDSGCTGVIADGDLVVKDWDEPPLHLLCAKREWRKTVISILRKKQQLRDLDSTEKQEAAQPSAEVPANLVFFLQRCSSYQGKTLSNSPE 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig698.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JLP4_9PHAE2.560e-3553.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ5_9PHAE4.310e-3550.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X3_9PHAE1.530e-2846.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZU8_ECTSI1.290e-2343.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1C6_ECTSI3.170e-2145.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig698contigP-littoralis_Contig698:145552..147491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size534
Hectar predicted targeting categorysignal peptide
Exons3
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791443.4348652-UTR-P-littoralis_Contig698:145551..1455701680791443.4348652-UTR-P-littoralis_Contig698:145551..145570Pylaiella littoralis U1_48UTRP-littoralis_Contig698 145552..145570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791443.444566-CDS-P-littoralis_Contig698:145570..1457461680791443.444566-CDS-P-littoralis_Contig698:145570..145746Pylaiella littoralis U1_48CDSP-littoralis_Contig698 145571..145746 +
1680791443.4534888-CDS-P-littoralis_Contig698:146291..1465561680791443.4534888-CDS-P-littoralis_Contig698:146291..146556Pylaiella littoralis U1_48CDSP-littoralis_Contig698 146292..146556 +
1680791443.4636147-CDS-P-littoralis_Contig698:147419..1474911680791443.4636147-CDS-P-littoralis_Contig698:147419..147491Pylaiella littoralis U1_48CDSP-littoralis_Contig698 147420..147491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig698.37.1prot_P-littoralis_Contig698.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig698 145571..147491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig698.37.1

>prot_P-littoralis_Contig698.37.1 ID=prot_P-littoralis_Contig698.37.1|Name=mRNA_P-littoralis_Contig698.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
MNLLLFFSCCFSRVCPVRYTYFWQCGRTTTASSRTAQEPGAATAKPSRTQ
PSLAVTSSARGACAGTKRTPSPRTSTLGAPARSRPGSSWSRTGWTPPCTS
SAPSASGGRLSTTTFSRRRTSRTSAPHPTRKRPSPALPSRRLSRTSEGDS
TSAESTPRDTLMTVSRCAERV
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mRNA from alignment at P-littoralis_Contig698:145552..147491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig698.37.1 ID=mRNA_P-littoralis_Contig698.37.1|Name=mRNA_P-littoralis_Contig698.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1940bp|location=Sequence derived from alignment at P-littoralis_Contig698:145552..147491+ (Pylaiella littoralis U1_48)
CGCCACCAGCACCTTTCCCATGAATCTGTTGCTTTTTTTTTCATGCTGCT
TTTCTCGTGTTTGTCCCGTTCGGTACACATATTTTTGGCAGTGTGGGAGA
ACAACCACGGCGTCTTCTCGCACTGCGCAGGAGCCAGGAGCCGCGACGGC
AAAACCTTCAAGAACGCAACCGTCGCTAGCGGTGACATCGTCGGCGTAAG
TTGAACGGTTGCATGTCATGTCCGCCATGATGACCGTCGTATATGCTGTT
TTTTGTCATGTGATAAAGAGACCTGCCCCCGTCTGTTTTTCCATTTTCTT
TTTATATGCTGCTTTTACCCCATGTAGTTAAAAAGAAAAAAGAGCCGCCC
CCGTATATTATTTTATAATAATAACGTATGCCGTTTCACTGTACCTCTCT
TCTTCCTCCCGCTTCCGCCTGCCCCTCCCGCTCTCCATTTATTTCCCTCA
CCGTCGTTGACGGTGACATCATCGGCGTTAGTTGTACGGTTGCATGTTAT
CTCCGACATCATGACCGTCGTGCTGTTTTTTTGTCGCGTGATAAAGAAGA
CCTGCCCCCGTCTATTTTTCCGTTTTCTTTTTATATGCCGTTTTTATCCC
ATGTCGTTCAAAAGAGCCGCCCCAGTCTATTTCTGTTATCATAATTACGT
GCGCCGTAACTCTGTACCTCTCTCTCCCTCCCCCTTCGCCCTTCCCTCCC
GCTCTCCCTTTATTTCCCTTCCTCAATCCGAAAATAACAGAAGAGGTGCC
TGTGCTGGGACGAAAAGAACGCCGTCTCCAAGGACATCAACACTGGGTGC
ACCGGCAAGATCAAGGCCGGGGAGCTCGTGGTCAAGGACTGGGTGGACCC
CCCCCTGCACCTCGTCTGCTCCAAGCGCGAGTGGAGGAAGGCTATCGACC
ACCACGTTCAGCAGAAGAAGGACTTCCAGGACCTCGGCACCACACCCGAC
AAGGAAGCGGCCCAGCCCTGCGCTGCCGTCCCGGCGGCTCTCAAGGACTT
CTGAGGTACGATCTGTATCTGATTATACCGGGCTAACGCTCCCCTCAAAC
ATACAACGAAACCTCAAAATAACTTAATGGAACTTGATCTATCGAGCAGC
GATTCGGAAACTGACGTCATAGTGCCAAATGACGCTGCAGCTCAGCGTAG
AAGCAGGCGCGCAGCTTTAATAGCAGATCGACGATCCAGAGGTGAAATTC
GAAACATACAACATCAAATCCGCAACAATGCATGTCATCGCAGAAGCAGG
CGCGCTGCCATTATCGCCGCACGTCGCGCATCCGGTTAAATTCGCATTCA
CGCCGCCAACGATACATCACCACCATCTCTCCCTCCTTCCCCTAATCCTC
CACCGCCTACTTTACCTCCTCCACCACCACAACCTGTATGGGCTGTTCAG
CATGAGATTGGTGACGGAGCTTGCGGCTTTCGAGCAATTGCTAGACGTTT
CCTCGGTGATCCTGAGTTGCACTTACAAGCACGACATCAAATTGTACTGT
ACCTTGCACACAACAGTCAGGACGACAACCTACACATCCACGACGGCATT
AACACAGAACTTCTTTACTGTTCAGGTTCACCGCCCTCTACATACTCCTC
TTACGACGACTAACTCTCAAGAATGTCCATGCCTACCACGTACATGGGCC
AACCCGAAATTACTGCTGCCATCGCAGTCTATGGAACCCCTATAATTCCA
CACTTGCAAAGTTCAACCTTACCGCACCCAGCCATCGCTGATCTCAATAG
ACTTCACTTAAGGTTCACATCTGCCTCACGTCATTACGACACCTTCACCC
TATCAAACCCTGCCGCTCAATCCTAACATGACCCGTTGCGATTCAAAGGT
CCACTATTTCCTGTTCAGGGCGACTCCACAAGCGCGGAGTCGACTCCTCG
CGACACCCTGATGACGGTCTCACGGTGTGCTGAAAGGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig698:145552..147491+

>mRNA_P-littoralis_Contig698.37.1 ID=mRNA_P-littoralis_Contig698.37.1|Name=mRNA_P-littoralis_Contig698.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig698:145552..147491+ (Pylaiella littoralis U1_48)
ATGAATCTGTTGCTTTTTTTTTCATGCTGCTTTTCTCGTGTTTGTCCCGT
TCGGTACACATATTTTTGGCAGTGTGGGAGAACAACCACGGCGTCTTCTC
GCACTGCGCAGGAGCCAGGAGCCGCGACGGCAAAACCTTCAAGAACGCAA
CCGTCGCTAGCGGTGACATCGTCGGCAAGAGGTGCCTGTGCTGGGACGAA
AAGAACGCCGTCTCCAAGGACATCAACACTGGGTGCACCGGCAAGATCAA
GGCCGGGGAGCTCGTGGTCAAGGACTGGGTGGACCCCCCCCTGCACCTCG
TCTGCTCCAAGCGCGAGTGGAGGAAGGCTATCGACCACCACGTTCAGCAG
AAGAAGGACTTCCAGGACCTCGGCACCACACCCGACAAGGAAGCGGCCCA
GCCCTGCGCTGCCGTCCCGGCGGCTCTCAAGGACTTCTGAGGGCGACTCC
ACAAGCGCGGAGTCGACTCCTCGCGACACCCTGATGACGGTCTCACGGTG
TGCTGAAAGGGTC
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