mRNA_P-littoralis_Contig697.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig697.29.1
Unique NamemRNA_P-littoralis_Contig697.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 7.160e-70
Identity = 114/189 (60.32%), Postives = 133/189 (70.37%), Query Frame = 1
Query:  313 DGFVFAIRIGCLLHILHLAVNAGMQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGSKGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            +G +FA+RIGC LH+LHLAVNAGM+                                 RSDSSCISW+ FQNLVFG KGV W  KFIRPAETRWMV+W+ AA+LE+RW++VRWL +EWAA  LL TPFM YWFK+ CML +PLIRVHAKFC AL K +LSWAYNW+RGEGGY L+G  GV +RLP GMR
Sbjct:  259 EGPIFAVRIGCALHVLHLAVNAGMEC--------------------------------RSDSSCISWERFQNLVFGCKGVKWGCKFIRPAETRWMVVWDAAALLEDRWDEVRWLHLEWAAAKLLGTPFMDYWFKSLCMLDDPLIRVHAKFCVALRKVVLSWAYNWIRGEGGYLLEGRGGVAERLPAGMR 415          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.150e-61
Identity = 102/166 (61.45%), Postives = 119/166 (71.69%), Query Frame = 1
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGSKGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            M+  FFMGPL + SWHEW   HLVALL +LWYN SRSDSSCISW+  +NLVF +KGV+W  KFIRPAETRWMVI + AA+LEERW++                        +T ML +PLIRVHAKFC AL KA+LSWAYNW+RGEGGYFL+G  GV +RLPPGMR
Sbjct:    1 MECEFFMGPLGKGSWHEWEDNHLVALLATLWYNISRSDSSCISWRRVKNLVFRAKGVMWICKFIRPAETRWMVIRDAAALLEERWDE------------------------STYMLDDPLIRVHAKFCVALRKAVLSWAYNWIRGEGGYFLEGTGGVAERLPPGMR 142          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 3.730e-56
Identity = 89/168 (52.98%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGS--KGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            M S  FMGPL + SWHEW + H+ +LLG +WYNTSRS SS   ++ ++ +V         W  KFIRPAETRWMV+ +GA +L ERWEQV WLF E+AA+ L +T F +YW ++ CML++PL+RVH  F   L + +  WAYNW+ G+GG+FLKG +GV +RL PGMR
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKG-EGVGRRLSPGMR 167          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 5.990e-54
Identity = 85/163 (52.15%), Postives = 115/163 (70.55%), Query Frame = 1
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGS--KGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRL 864
            M S  FMGPL + SWHEW + H+ +LLG +WYNTSRS SS  +++ ++ +V         W  KFIRPAETRWMV+ +GA +L ERWEQV WLF E+AA+ L +T F +YW ++ CML++PL+RVH  F   L + +  WAYNW+ G+GG+FLKG +GV +RL
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGNFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKG-EGVGRRL 162          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 8.040e-53
Identity = 88/168 (52.38%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGS--KGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            M S  FMGPL + SWHEW + H+ +LLG +WYNTSRS+ S  S++ ++ +V         W  KFIRPAETRWMV+ +GA +L ERWEQV WLF E+AA+ L +T F +YW ++ CML++PL+RVH  F   L + +  WAYNW+ G+GG+FLKG +GV +RL P MR
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSEPSNASFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKG-EGVGRRLFPAMR 167          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 8.820e-52
Identity = 86/168 (51.19%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGS--KGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            M S++FMGPL + SWHEW + H+ +LLG +WYNTSRS+SS  +++ ++ +V         W  KF+RPAETRWMV+ +GA +L +RWEQV WLF E+AA+ L +T F +YW ++  ML++PL+RVH  F   L + +  WAYNW+RG+GG+FLKG +GV ++L PGMR
Sbjct:    1 MTSVYFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESSNANFQRWKRVVQQQFPDAKPWLIKFVRPAETRWMVVMDGAKLLCKRWEQVEWLFCEYAARNLNKTTFRNYWLQSAYMLRDPLVRVHVMFTARLGELLFDWAYNWIRGKGGFFLKG-EGVGRQLFPGMR 167          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.110e-43
Identity = 91/231 (39.39%), Postives = 122/231 (52.81%), Query Frame = 1
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGS--KGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKF--------------------------------CGALHKA-------------------------------ILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            M S  FMGPL + SWHEW + H+ +LLG +WYNTSRS+SS  +++ ++ +V         W  KFIRPAETRWMV+ +GA +L ERWEQV WLF E+AA+ L +T F +YW ++ CML++PL+RVH  F                                 G L+K                                +  WAYNW+ G+GG+FLKG +GV +RL PGMR
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESSNANFQRWKRIVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAAKGSXCERWEQVEWLFCEYAAGNLNKTTYRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKG-EGVGRRLSPGMR 230          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5KE81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE81_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.800e-37
Identity = 70/139 (50.36%), Postives = 94/139 (67.63%), Query Frame = 1
Query:  469 LWYNTSRSDSSCISWKIFQNLVFGSKGVL--WKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            +WYNTSRS+SS  ++  +Q LV         W  KFI+PAETRWMV+ +GA IL ERW++V WLF EWAA  + +T + +YW K+   LQ+PL+ V   F   L + +  WAYNW+RG+GG+FLK  +GV +RL PGMR
Sbjct:    2 VWYNTSRSNSSNTNFLRWQKLVADEFPAAKPWTKKFIKPAETRWMVVMDGAKILFERWDEVAWLFGEWAACNIGKTTYRNYWLKSAVALQDPLMLVQVMFAARLGELVFDWAYNWIRGKGGFFLKC-EGVGRRLFPGMR 139          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5KP72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP72_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.230e-33
Identity = 69/166 (41.57%), Postives = 95/166 (57.23%), Query Frame = 1
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGSKGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            M SL+FMGPL + SWHEW + H+ +LLG +WY+TSRS+SS        N  F                              +RW++V  L  E+AA+ L +T F +YW ++  ML+NPL+RVH  F   L + +  WA NW+RG+GG+FLKG +GV +RL PGMR
Sbjct:    1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMVWYSTSRSESS--------NANF------------------------------QRWKRVEKLVREYAARYLNKTTFRNYWLQSAYMLRNPLVRVHVVFTARLGELLFDWANNWIRGKGGFFLKG-EGVGRRLFPGMR 127          
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.710e-32
Identity = 69/166 (41.57%), Postives = 95/166 (57.23%), Query Frame = 1
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWKIFQNLVFGSKGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMR 879
            M SL+FMGPL + SWHEW + H+ +LLG +WY+TSRS+SS        N  F                              +RW++V  L  E+AA+ L +T F +YW ++  ML+NPL+RVH  F   L + +  WA NW+RG+GG+FLKG +GV +RL PGMR
Sbjct:    1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMVWYSTSRSESS--------NANF------------------------------QRWKRVEKLVREYAARYLNKTTFRNYWLQSAYMLRNPLVRVHVVFTARLGELLFDWANNWIRGKGGFFLKG-EGVGRRLFPGMR 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig697.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JU73_9PHAE7.160e-7060.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE1.150e-6161.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW26_9PHAE3.730e-5652.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSR2_9PHAE5.990e-5452.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI13_9PHAE8.040e-5352.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI8.820e-5251.19Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KH75_9PHAE1.110e-4339.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE81_9PHAE2.800e-3750.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP72_9PHAE3.230e-3341.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8G1_9PHAE3.710e-3241.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig697contigP-littoralis_Contig697:138139..139020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size882
Hectar predicted targeting categoryother localisation
Exons1
Cds size672
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791443.393432-CDS-P-littoralis_Contig697:138138..1388101680791443.393432-CDS-P-littoralis_Contig697:138138..138810Pylaiella littoralis U1_48CDSP-littoralis_Contig697 138139..138810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791443.4033144-UTR-P-littoralis_Contig697:138810..1390201680791443.4033144-UTR-P-littoralis_Contig697:138810..139020Pylaiella littoralis U1_48UTRP-littoralis_Contig697 138811..139020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig697.29.1prot_P-littoralis_Contig697.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig697 138139..138810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig697.29.1

>prot_P-littoralis_Contig697.29.1 ID=prot_P-littoralis_Contig697.29.1|Name=mRNA_P-littoralis_Contig697.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MADSAQGRGQQPQSNNQSQQAESEPAPAAAASAFDGFVFAIRIGCLLHIL
HLAVNAGMQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCIS
WKIFQNLVFGSKGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFV
EWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWL
RGEGGYFLKGPDGVPKRLPPGMR*
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mRNA from alignment at P-littoralis_Contig697:138139..139020-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig697.29.1 ID=mRNA_P-littoralis_Contig697.29.1|Name=mRNA_P-littoralis_Contig697.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=882bp|location=Sequence derived from alignment at P-littoralis_Contig697:138139..139020- (Pylaiella littoralis U1_48)
CGAAGAGCCCAAAGAACAAACCAAAGAACGGCGAGTACGTGTGTGTGCCG GTGCTGCTGCTGCTCTCACGATTTTCTCTCAAGCGCTCTAGAGGCGCGAT GCTGATAAAGCAGCAGTAACAGCAGCACTAGCAGTGTGCACTGCTGTGCA AAGCAGCCGCCTGTGATTCAACAAGCAGCAGTAGCCAGATCACACCACCA GTGGGCCGCCATGGCCGATAGCGCGCAAGGACGCGGACAGCAGCCCCAGA GCAATAATCAATCTCAACAAGCAGAGAGCGAGCCTGCTCCTGCTGCTGCT GCTTCTGCTTTCGATGGCTTCGTCTTTGCTATCCGTATCGGATGTCTCTT GCACATCCTGCACCTCGCGGTGAATGCGGGGATGCAGTCTCTGTTCTTCA TGGGCCCCCTCACTCAGGCGTCATGGCACGAGTGGCCAAAGCCTCACCTC GTCGCTTTACTTGGATCACTTTGGTACAACACCTCCAGGTCGGATTCATC TTGTATTTCATGGAAAATATTTCAAAACCTGGTGTTTGGAAGCAAAGGGG TCTTGTGGAAAACAAAATTCATCAGGCCCGCCGAAACGCGGTGGATGGTG ATTTGGGAGGGTGCAGCCATTCTTGAGGAACGCTGGGAGCAGGTCCGGTG GCTGTTTGTGGAGTGGGCTGCCAAGGTTCTACTTCGCACCCCGTTTATGT CGTACTGGTTCAAGGCGACGTGCATGCTCCAAAATCCTCTCATCCGAGTA CACGCTAAGTTTTGTGGTGCCCTGCACAAGGCGATCCTGAGTTGGGCATA CAACTGGCTGCGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGGAG TACCGAAGCGGCTGCCACCTGGGATGCGATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig697:138139..139020-

>mRNA_P-littoralis_Contig697.29.1 ID=mRNA_P-littoralis_Contig697.29.1|Name=mRNA_P-littoralis_Contig697.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig697:138139..139020- (Pylaiella littoralis U1_48)
ATGGCCGATAGCGCGCAAGGACGCGGACAGCAGCCCCAGAGCAATAATCA
ATCTCAACAAGCAGAGAGCGAGCCTGCTCCTGCTGCTGCTGCTTCTGCTT
TCGATGGCTTCGTCTTTGCTATCCGTATCGGATGTCTCTTGCACATCCTG
CACCTCGCGGTGAATGCGGGGATGCAGTCTCTGTTCTTCATGGGCCCCCT
CACTCAGGCGTCATGGCACGAGTGGCCAAAGCCTCACCTCGTCGCTTTAC
TTGGATCACTTTGGTACAACACCTCCAGGTCGGATTCATCTTGTATTTCA
TGGAAAATATTTCAAAACCTGGTGTTTGGAAGCAAAGGGGTCTTGTGGAA
AACAAAATTCATCAGGCCCGCCGAAACGCGGTGGATGGTGATTTGGGAGG
GTGCAGCCATTCTTGAGGAACGCTGGGAGCAGGTCCGGTGGCTGTTTGTG
GAGTGGGCTGCCAAGGTTCTACTTCGCACCCCGTTTATGTCGTACTGGTT
CAAGGCGACGTGCATGCTCCAAAATCCTCTCATCCGAGTACACGCTAAGT
TTTGTGGTGCCCTGCACAAGGCGATCCTGAGTTGGGCATACAACTGGCTG
CGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGGAGTACCGAAGCG
GCTGCCACCTGGGATGCGATAG
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