mRNA_P-littoralis_Contig694.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.31.1
Unique NamemRNA_P-littoralis_Contig694.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig694.31.1 vs. uniprot
Match: A0A6H5L6U0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.050e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:    2 FMNTKCQGWDRQMGGMERTSSQDGVVG 82
            F++TKCQGWDRQMGGMERT S DGV+G
Sbjct: 1007 FLDTKCQGWDRQMGGMERTPSADGVIG 1033
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BLAST of mRNA_P-littoralis_Contig694.31.1 vs. uniprot
Match: D8LFK1_ECTSI (TTK-like n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK1_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 8.490e-5
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:    2 FMNTKCQGWDRQMGGMERTSSQDGVVG 82
            F++T+C GWDRQMGGMERT S DGV+G
Sbjct:  879 FLDTRCPGWDRQMGGMERTFSADGVMG 905
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6U0_9PHAE2.050e-681.48Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LFK1_ECTSI8.490e-574.07TTK-like n=2 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:116840..117181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size343
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.3421223-CDS-P-littoralis_Contig694:116839..1171811680791439.3421223-CDS-P-littoralis_Contig694:116839..117181Pylaiella littoralis U1_48CDSP-littoralis_Contig694 116840..117181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.31.1prot_P-littoralis_Contig694.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 116840..117181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.31.1

>prot_P-littoralis_Contig694.31.1 ID=prot_P-littoralis_Contig694.31.1|Name=mRNA_P-littoralis_Contig694.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
LHEHQVSRVGSADGRNGTYFLPGWGGRVSYPVASLACSVGGMMALTCMFR
RRRCQHFVQLHSVFVEVFTRALPSNRPTRVGLPSTQVGVEVKRRQGFHQY
DSRRTCNAGQRSC*
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mRNA from alignment at P-littoralis_Contig694:116840..117181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.31.1 ID=mRNA_P-littoralis_Contig694.31.1|Name=mRNA_P-littoralis_Contig694.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig694:116840..117181- (Pylaiella littoralis U1_48)
CTTCATGAACACCAAGTGTCAAGGGTGGGATCGGCAGATGGGCGGAATGG
AACGTACTTCCTCCCAGGATGGGGTGGTCGGGTGAGCTACCCTGTTGCTA
GTTTGGCGTGTTCTGTTGGAGGCATGATGGCACTTACTTGCATGTTCCGC
CGGCGAAGATGTCAGCATTTTGTGCAACTACACTCGGTTTTTGTTGAAGT
TTTCACCCGAGCACTACCCTCTAACCGCCCGACACGGGTGGGTTTGCCCT
CAACACAGGTCGGAGTGGAAGTCAAGAGACGTCAAGGGTTCCACCAGTAT
GACTCTCGGCGCACGTGCAACGCGGGCCAGCGAAGCTGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:116840..117181-

>mRNA_P-littoralis_Contig694.31.1 ID=mRNA_P-littoralis_Contig694.31.1|Name=mRNA_P-littoralis_Contig694.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig694:116840..117181- (Pylaiella littoralis U1_48)
CTTCATGAACACCAAGTGTCAAGGGTGGGATCGGCAGATGGGCGGAATGG
AACGTACTTCCTCCCAGGATGGGGTGGTCGGGTGAGCTACCCTGTTGCTA
GTTTGGCGTGTTCTGTTGGAGGCATGATGGCACTTACTTGCATGTTCCGC
CGGCGAAGATGTCAGCATTTTGTGCAACTACACTCGGTTTTTGTTGAAGT
TTTCACCCGAGCACTACCCTCTAACCGCCCGACACGGGTGGGTTTGCCCT
CAACACAGGTCGGAGTGGAAGTCAAGAGACGTCAAGGGTTCCACCAGTAT
GACTCTCGGCGCACGTGCAACGCGGGCCAGCGAAGCTGCTGA
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