mRNA_P-littoralis_Contig694.18.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: D8LEW0_ECTSI (20S proteasome subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW0_ECTSI) HSP 1 Score: 451 bits (1160), Expect = 1.990e-152 Identity = 255/362 (70.44%), Postives = 272/362 (75.14%), Query Frame = 2
Query: 53 MRTPFEILAVVLAAHPSVAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADA------KDTEEASELDDTG------------DERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQDLGALDWRGTAEAAVRAALAGGAKECDVLVLRRRVDGAGAPAPE---ATEPXXXXXXXXXXXRAGGACVEKGWRDRGEGAWSKRFLGSVGHDGVVSLEE 1075
MR P +LAV+LAA P +AAVYDRAITVFSPDGKLMQVSYAEEAVK+GSL VAA NGRD+I MCLERPA+ +T DA + T S + D G D RRR R K EGGVRDPGV VGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRY MGAAPSV YIARYVG LQHRYTRTGGARPYGVACL+ GFDE+T LP++FRSEPSGA+AEWTASAVGKASDKALG+LE+V DLGALDWRGTAEAAVRAALAGGAK CDVLVLRR PA ATEP A A GW RG GAWSKRFLGS+G DG V LEE
Sbjct: 1 MRAPIAVLAVILAARPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKQGSLGVAACNGRDAIAMCLERPAADGDITDPDATPSRASETTVATSAITDAGAGAAGDTARAGDDHVYSRRRNRRKHHEGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGELQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWTASAVGKASDKALGRLEAVPDLGALDWRGTAEAAVRAALAGGAKYCDVLVLRRVAGDDDVPAAAEAVATEPPESEFTAEGGGEARSA--RAGWSHRG-GAWSKRFLGSIGGDGAVLLEE 359
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE) HSP 1 Score: 450 bits (1158), Expect = 1.210e-147 Identity = 263/362 (72.65%), Postives = 282/362 (77.90%), Query Frame = 2
Query: 47 RRMRTPFEILAVVLAAHPSVAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADA-----KDTEEASEL----------DDTGDERAH---RRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQDLGALDWRGTAEAAVRAALAGGAKECDVLVLRRRVDGAGAPAPEATEPXXXXXXXXXXXRAGGA-CVEKGWRDRGEGAWSKRFLGSVGHDGVVSLEE 1075
R MR P +LAV+LAA P +AAVYDRAITVFSPDGKLMQVSYAEEAVK+GSLAVAA NGRD+I MCLERP + +T DA +T A+ + D G AH RRR R K EGGVRDPGV VGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQS+RY MGAAPSV YIARYVGGLQHRYTRTGGARPYGVACL+ GFDE+T LP++FRSEPSGA+AEW ASAVGKASDKAL KLESV DLGALDWRGTAEAAVRAALAGGAKECDVLVLRR D XXXXXXXXXXX G ++ GW DRG GAWSKRF GS+G DG V LEE
Sbjct: 307 RIMRAPIAVLAVILAARPCIAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPEADGDVTDPDATPSRPSETTVATSVITDAGAGAAGDTAGAGDAHVYSRRRSRRKRREGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSFRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKALDKLESVPDLGALDWRGTAEAAVRAALAGGAKECDVLVLRRVADXXXXXXXXXXXXXXXXXXXXXXXXXGEVRWLKAGWSDRGGGAWSKRFFGSIGGDGAVLLEE 668
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A835YTL9_9STRA (Proteasome subunit-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL9_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.920e-43 Identity = 87/166 (52.41%), Postives = 117/166 (70.48%), Query Frame = 2
Query: 407 IVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKA---SDKALGKLESVQD-LGALDWRGTAEAAVRAAL-AGGAKECDVLVLRRR 889
+ D+ +N RKL ++DE VY+ FAG++ADGRV+ KIR+ECQSYR G APS+++IARY G LQHRYT GG RP+GVA ++ GFD +T +FR++PSGA EW A AVG +D A+ +LE+ LG ++ AEAA RAAL A A+EC+VL+L+RR
Sbjct: 7 LADTRSNLRRKLVQVDEEVYVTFAGLAADGRVMLDKIRVECQSYRLTFGEAPSLAHIARYAGDLQHRYTLQGGGRPFGVALIIAGFDADTGGARVFRTDPSGAVTEWRAVAVGGGKGVNDAAMKQLEAEGGKLGEMEGESLAEAAARAALQADAARECEVLLLQRR 172
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A5J4ZA11_PORPP (Proteasome subunit alpha type n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZA11_PORPP) HSP 1 Score: 163 bits (412), Expect = 2.370e-42 Identity = 102/271 (37.64%), Postives = 147/271 (54.24%), Query Frame = 2
Query: 116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKAS-----------DKALGKLESVQDLGALDWRGTAEAAVRAALA---GGAKECDVLVLRR 886
YDRAITVFSPDG L QV YA EAV+KG+ AV G+D +V+CLE+ K T + E RK+C +D+ + LAFAG++AD RVL +K R+ECQSYR + APSV Y+ RY+ G+Q RYT++GG RP+G++ L+VGFD + S P +F+++PSG ++EW A+A+G+ S D+ +G+ +D AL T + A+RA L AK ++ V+ +
Sbjct: 4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAVGV-RGKDVLVLCLEK------------KSTAKLQEARTV------------------------------------RKICNLDQHIVLAFAGLTADARVLINKARVECQSYRLTVEDAPSVDYVTRYIAGVQQRYTQSGGVRPFGISSLIVGFDTDGS-PRLFQTDPSGTYSEWKANAIGRNSKTVTEFLEKKYDEFIGQANGTEDA-ALSESETVKFAIRALLEVVESSAKNIEIAVMTK 223
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A024TP35_9STRA (Proteasome subunit alpha type n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TP35_9STRA) HSP 1 Score: 159 bits (401), Expect = 4.380e-41 Identity = 107/279 (38.35%), Postives = 150/279 (53.76%), Query Frame = 2
Query: 104 VAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLES--VQDLGALDWRGTAEAAVRAALA---GGAKECDVLVLRRRVDGAGAPAPEAT 925
+A+ YDRAITVFSPDG L QV YA EAVK+G++ V G D +V+ +ER K+T + ++DP RK+C++D+ + LAFAG++AD RVL +K RLECQSYR + APSV Y+ARYV +Q RYT+ GG RP+G++ L+ G D +P +++++PSG F W A+A G+ LE VQD+ D G AV+A L G+K +V V+RR G + P+AT
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGV-RGADVVVLAVER------------KETAK-------------------------LQDPRTV-----------RKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYVAKVQQRYTQRGGVRPFGISMLIAGCDTK-GVPQLYQTDPSGTFTAWKANATGRNEKSTREFLEKNYVQDM---DEEGAVRLAVKALLEVVEAGSKNIEVAVVRR--GGVSSTVPDAT 224
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A7S3YE59_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE59_HETAK) HSP 1 Score: 159 bits (401), Expect = 6.370e-40 Identity = 97/236 (41.10%), Postives = 123/236 (52.12%), Query Frame = 2
Query: 116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKL---------CEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDE---NTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQ 787
YDR+IT+FSPDGKL QV YAE+AV G+ A+A +N +DSIV+C G+ AN Q+RKL +IDE ++L +AG+ ADGRVLA K RLECQ YR+ MG APSV YIA + +QH YTR GARP+GV CL+VGFD P IFR +PSG AEW+ VG+ S + +L + Q
Sbjct: 28 YDRSITIFSPDGKLEQVEYAEKAVHHGAPAMALTNQKDSIVVC----------------------------------------------------YGV---ANQQERKLQNPSESQKFMKIDEHIFLTYAGLKADGRVLAQKARLECQQYRFSMGEAPSVEYIATRIADIQHSYTRRPGARPFGVGCLVVGFDAAAGGAGGPRIFRVDPSGYLAEWSGVCVGRDSSEIQTRLTNEQ 208
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A3R6Z883_9STRA (Proteasome subunit alpha type n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6Z883_9STRA) HSP 1 Score: 155 bits (393), Expect = 6.880e-40 Identity = 102/262 (38.93%), Postives = 141/262 (53.82%), Query Frame = 2
Query: 116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLES--VQDLGALDWRGTAEAAVRAALA---GGAKECDVLVLRR 886
YDRAITVFSPDG L QV YA EAVK+G++ V G D +V+ +ER K+T + ++DP RK+C++D+ + LAFAG++AD RVL +K RLECQSYR + APSV Y+ARYV +Q RYT+ GG RP+G++ L+ G D +P +++++PSG F W A+A G+ LE VQD+ D G AV+A L G+K +V V+RR
Sbjct: 9 YDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGV-RGADVVVLAVER------------KETAK-------------------------LQDPRTV-----------RKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYVAKVQQRYTQRGGVRPFGISMLIAGCDTK-GVPQLYQTDPSGTFTAWKANATGRNEKSTREFLEKNYVQDM---DEEGAVRLAVKALLEVVEAGSKNIEVAVVRR 217
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A7S1TNP8_9RHOD (Proteasome subunit alpha type n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNP8_9RHOD) HSP 1 Score: 156 bits (394), Expect = 9.220e-40 Identity = 88/213 (41.31%), Postives = 127/213 (59.62%), Query Frame = 2
Query: 116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKAS 754
YDRAITVFSPDG L QV YA EAV+KG+ A+ G +V+C+E+ ++ AK +++P RK+C++D + LAFAG++AD RVL +K R+ECQSYR + APSV YI RY+ G+Q RYT++GG RP+G++ L+VGFD + S P +F+++PSG+F+EW A+A+G+ S
Sbjct: 4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAIGV-RGAGVLVLCVEKKST--------AK-----------------------------LQEPRTV-----------RKICKLDSHILLAFAGLTADARVLVNKARVECQSYRLTVEDAPSVDYITRYIAGVQQRYTQSGGVRPFGISTLIVGFDLDGS-PRLFQTDPSGSFSEWKAAAIGRNS 166
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A3G2QWN8_9STRA (Proteasome subunit alpha type n=1 Tax=Thraustochytrium striatum TaxID=87106 RepID=A0A3G2QWN8_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.430e-39 Identity = 100/262 (38.17%), Postives = 145/262 (55.34%), Query Frame = 2
Query: 104 VAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQDLGALDWRGTAEAAVRAALA---GGAKECDVLVL 880
++A YDRA+TVFSPDG L QV YA EAV+KGS +V G+D +V+ +E+ A A++L DT RK+ ++DE + LAFAG++AD RVL ++ R+ECQS+R + AP+V YI+R+V G++ +YT+ GG RP+GV L+ GFD + + P +F++EPSGA++ W A+ GK LES + +D + AVRA L GGAK +V+VL
Sbjct: 1 MSARYDRALTVFSPDGHLFQVEYAMEAVRKGS-SVVGIRGKDCVVLGVEKYA---------------AAKLQDT---------------------------------RTVRKIAQLDEHIMLAFAGLNADARVLVNRARVECQSHRLTVEDAPTVDYISRWVAGIKQKYTQRGGVRPFGVGMLIAGFDPDGT-PQLFKTEPSGAYSSWKAATTGKGDKTIREYLESAYEPD-MDEASAVKIAVRALLDVADGGAKNIEVVVL 211
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: K3WH72_GLOUD (Proteasome subunit alpha type n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WH72_GLOUD) HSP 1 Score: 154 bits (389), Expect = 1.930e-39 Identity = 94/258 (36.43%), Postives = 140/258 (54.26%), Query Frame = 2
Query: 116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLES--VQDLGALDWRGTAEAAVRAALAGGAKECDVLVLR 883
YDRAITVFSPDG L QV YA EAVKKG++ V G++S+++ +ER +E ++L D RK+C++D+ + +AFAG++AD RVL +K RLECQSYR + APSV Y+ARYV +Q +YT+ GG RP+G++ L+ G D N +P +++++PSG F+ W A+A G+ S LE +DL D A A+ + G+K ++ ++R
Sbjct: 4 YDRAITVFSPDGHLFQVEYAMEAVKKGAVVVGV-RGKNSVILAVER---------------KEIAKLQDP---------------------------------RTVRKICKVDDHISIAFAGLTADARVLINKARLECQSYRLTVEDAPSVEYVARYVARIQQKYTQRGGVRPFGISMLIAGCDNN-GVPQLYQTDPSGTFSAWKANATGRNSTNIREFLEKNYAEDLSEEDATRLAIKALLEIVESGSKNIEIAIVR 211 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig694.18.2 >prot_P-littoralis_Contig694.18.2 ID=prot_P-littoralis_Contig694.18.2|Name=mRNA_P-littoralis_Contig694.18.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=354bp MRTPFEILAVVLAAHPSVAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLback to top mRNA from alignment at P-littoralis_Contig694:83933..88788- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig694.18.2 ID=mRNA_P-littoralis_Contig694.18.2|Name=mRNA_P-littoralis_Contig694.18.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4856bp|location=Sequence derived from alignment at P-littoralis_Contig694:83933..88788- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig694:83933..88788- >mRNA_P-littoralis_Contig694.18.2 ID=mRNA_P-littoralis_Contig694.18.2|Name=mRNA_P-littoralis_Contig694.18.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig694:83933..88788- (Pylaiella littoralis U1_48)back to top |