mRNA_P-littoralis_Contig694.18.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.18.2
Unique NamemRNA_P-littoralis_Contig694.18.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: D8LEW0_ECTSI (20S proteasome subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW0_ECTSI)

HSP 1 Score: 451 bits (1160), Expect = 1.990e-152
Identity = 255/362 (70.44%), Postives = 272/362 (75.14%), Query Frame = 2
Query:   53 MRTPFEILAVVLAAHPSVAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADA------KDTEEASELDDTG------------DERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQDLGALDWRGTAEAAVRAALAGGAKECDVLVLRRRVDGAGAPAPE---ATEPXXXXXXXXXXXRAGGACVEKGWRDRGEGAWSKRFLGSVGHDGVVSLEE 1075
            MR P  +LAV+LAA P +AAVYDRAITVFSPDGKLMQVSYAEEAVK+GSL VAA NGRD+I MCLERPA+   +T  DA      + T   S + D G            D    RRR R K  EGGVRDPGV VGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRY MGAAPSV YIARYVG LQHRYTRTGGARPYGVACL+ GFDE+T LP++FRSEPSGA+AEWTASAVGKASDKALG+LE+V DLGALDWRGTAEAAVRAALAGGAK CDVLVLRR       PA     ATEP            A  A    GW  RG GAWSKRFLGS+G DG V LEE
Sbjct:    1 MRAPIAVLAVILAARPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKQGSLGVAACNGRDAIAMCLERPAADGDITDPDATPSRASETTVATSAITDAGAGAAGDTARAGDDHVYSRRRNRRKHHEGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGELQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWTASAVGKASDKALGRLEAVPDLGALDWRGTAEAAVRAALAGGAKYCDVLVLRRVAGDDDVPAAAEAVATEPPESEFTAEGGGEARSA--RAGWSHRG-GAWSKRFLGSIGGDGAVLLEE 359          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 1.210e-147
Identity = 263/362 (72.65%), Postives = 282/362 (77.90%), Query Frame = 2
Query:   47 RRMRTPFEILAVVLAAHPSVAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADA-----KDTEEASEL----------DDTGDERAH---RRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQDLGALDWRGTAEAAVRAALAGGAKECDVLVLRRRVDGAGAPAPEATEPXXXXXXXXXXXRAGGA-CVEKGWRDRGEGAWSKRFLGSVGHDGVVSLEE 1075
            R MR P  +LAV+LAA P +AAVYDRAITVFSPDGKLMQVSYAEEAVK+GSLAVAA NGRD+I MCLERP +   +T  DA      +T  A+ +          D  G   AH   RRR R K  EGGVRDPGV VGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQS+RY MGAAPSV YIARYVGGLQHRYTRTGGARPYGVACL+ GFDE+T LP++FRSEPSGA+AEW ASAVGKASDKAL KLESV DLGALDWRGTAEAAVRAALAGGAKECDVLVLRR  D            XXXXXXXXXXX  G    ++ GW DRG GAWSKRF GS+G DG V LEE
Sbjct:  307 RIMRAPIAVLAVILAARPCIAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPEADGDVTDPDATPSRPSETTVATSVITDAGAGAAGDTAGAGDAHVYSRRRSRRKRREGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSFRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKALDKLESVPDLGALDWRGTAEAAVRAALAGGAKECDVLVLRRVADXXXXXXXXXXXXXXXXXXXXXXXXXGEVRWLKAGWSDRGGGAWSKRFFGSIGGDGAVLLEE 668          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A835YTL9_9STRA (Proteasome subunit-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.920e-43
Identity = 87/166 (52.41%), Postives = 117/166 (70.48%), Query Frame = 2
Query:  407 IVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKA---SDKALGKLESVQD-LGALDWRGTAEAAVRAAL-AGGAKECDVLVLRRR 889
            + D+ +N  RKL ++DE VY+ FAG++ADGRV+  KIR+ECQSYR   G APS+++IARY G LQHRYT  GG RP+GVA ++ GFD +T    +FR++PSGA  EW A AVG     +D A+ +LE+    LG ++    AEAA RAAL A  A+EC+VL+L+RR
Sbjct:    7 LADTRSNLRRKLVQVDEEVYVTFAGLAADGRVMLDKIRVECQSYRLTFGEAPSLAHIARYAGDLQHRYTLQGGGRPFGVALIIAGFDADTGGARVFRTDPSGAVTEWRAVAVGGGKGVNDAAMKQLEAEGGKLGEMEGESLAEAAARAALQADAARECEVLLLQRR 172          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A5J4ZA11_PORPP (Proteasome subunit alpha type n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZA11_PORPP)

HSP 1 Score: 163 bits (412), Expect = 2.370e-42
Identity = 102/271 (37.64%), Postives = 147/271 (54.24%), Query Frame = 2
Query:  116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKAS-----------DKALGKLESVQDLGALDWRGTAEAAVRAALA---GGAKECDVLVLRR 886
            YDRAITVFSPDG L QV YA EAV+KG+ AV    G+D +V+CLE+            K T +  E                                        RK+C +D+ + LAFAG++AD RVL +K R+ECQSYR  +  APSV Y+ RY+ G+Q RYT++GG RP+G++ L+VGFD + S P +F+++PSG ++EW A+A+G+ S           D+ +G+    +D  AL    T + A+RA L      AK  ++ V+ +
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAVGV-RGKDVLVLCLEK------------KSTAKLQEARTV------------------------------------RKICNLDQHIVLAFAGLTADARVLINKARVECQSYRLTVEDAPSVDYVTRYIAGVQQRYTQSGGVRPFGISSLIVGFDTDGS-PRLFQTDPSGTYSEWKANAIGRNSKTVTEFLEKKYDEFIGQANGTEDA-ALSESETVKFAIRALLEVVESSAKNIEIAVMTK 223          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A024TP35_9STRA (Proteasome subunit alpha type n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TP35_9STRA)

HSP 1 Score: 159 bits (401), Expect = 4.380e-41
Identity = 107/279 (38.35%), Postives = 150/279 (53.76%), Query Frame = 2
Query:  104 VAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLES--VQDLGALDWRGTAEAAVRAALA---GGAKECDVLVLRRRVDGAGAPAPEAT 925
            +A+ YDRAITVFSPDG L QV YA EAVK+G++ V    G D +V+ +ER            K+T +                         ++DP              RK+C++D+ + LAFAG++AD RVL +K RLECQSYR  +  APSV Y+ARYV  +Q RYT+ GG RP+G++ L+ G D    +P +++++PSG F  W A+A G+        LE   VQD+   D  G    AV+A L     G+K  +V V+RR   G  +  P+AT
Sbjct:    1 MASRYDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGV-RGADVVVLAVER------------KETAK-------------------------LQDPRTV-----------RKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYVAKVQQRYTQRGGVRPFGISMLIAGCDTK-GVPQLYQTDPSGTFTAWKANATGRNEKSTREFLEKNYVQDM---DEEGAVRLAVKALLEVVEAGSKNIEVAVVRR--GGVSSTVPDAT 224          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A7S3YE59_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE59_HETAK)

HSP 1 Score: 159 bits (401), Expect = 6.370e-40
Identity = 97/236 (41.10%), Postives = 123/236 (52.12%), Query Frame = 2
Query:  116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKL---------CEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDE---NTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQ 787
            YDR+IT+FSPDGKL QV YAE+AV  G+ A+A +N +DSIV+C                                                     G+   AN Q+RKL          +IDE ++L +AG+ ADGRVLA K RLECQ YR+ MG APSV YIA  +  +QH YTR  GARP+GV CL+VGFD        P IFR +PSG  AEW+   VG+ S +   +L + Q
Sbjct:   28 YDRSITIFSPDGKLEQVEYAEKAVHHGAPAMALTNQKDSIVVC----------------------------------------------------YGV---ANQQERKLQNPSESQKFMKIDEHIFLTYAGLKADGRVLAQKARLECQQYRFSMGEAPSVEYIATRIADIQHSYTRRPGARPFGVGCLVVGFDAAAGGAGGPRIFRVDPSGYLAEWSGVCVGRDSSEIQTRLTNEQ 208          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A3R6Z883_9STRA (Proteasome subunit alpha type n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6Z883_9STRA)

HSP 1 Score: 155 bits (393), Expect = 6.880e-40
Identity = 102/262 (38.93%), Postives = 141/262 (53.82%), Query Frame = 2
Query:  116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLES--VQDLGALDWRGTAEAAVRAALA---GGAKECDVLVLRR 886
            YDRAITVFSPDG L QV YA EAVK+G++ V    G D +V+ +ER            K+T +                         ++DP              RK+C++D+ + LAFAG++AD RVL +K RLECQSYR  +  APSV Y+ARYV  +Q RYT+ GG RP+G++ L+ G D    +P +++++PSG F  W A+A G+        LE   VQD+   D  G    AV+A L     G+K  +V V+RR
Sbjct:    9 YDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGV-RGADVVVLAVER------------KETAK-------------------------LQDPRTV-----------RKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYVAKVQQRYTQRGGVRPFGISMLIAGCDTK-GVPQLYQTDPSGTFTAWKANATGRNEKSTREFLEKNYVQDM---DEEGAVRLAVKALLEVVEAGSKNIEVAVVRR 217          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A7S1TNP8_9RHOD (Proteasome subunit alpha type n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNP8_9RHOD)

HSP 1 Score: 156 bits (394), Expect = 9.220e-40
Identity = 88/213 (41.31%), Postives = 127/213 (59.62%), Query Frame = 2
Query:  116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKAS 754
            YDRAITVFSPDG L QV YA EAV+KG+ A+    G   +V+C+E+ ++        AK                             +++P              RK+C++D  + LAFAG++AD RVL +K R+ECQSYR  +  APSV YI RY+ G+Q RYT++GG RP+G++ L+VGFD + S P +F+++PSG+F+EW A+A+G+ S
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAIGV-RGAGVLVLCVEKKST--------AK-----------------------------LQEPRTV-----------RKICKLDSHILLAFAGLTADARVLVNKARVECQSYRLTVEDAPSVDYITRYIAGVQQRYTQSGGVRPFGISTLIVGFDLDGS-PRLFQTDPSGSFSEWKAAAIGRNS 166          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: A0A3G2QWN8_9STRA (Proteasome subunit alpha type n=1 Tax=Thraustochytrium striatum TaxID=87106 RepID=A0A3G2QWN8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.430e-39
Identity = 100/262 (38.17%), Postives = 145/262 (55.34%), Query Frame = 2
Query:  104 VAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQDLGALDWRGTAEAAVRAALA---GGAKECDVLVL 880
            ++A YDRA+TVFSPDG L QV YA EAV+KGS +V    G+D +V+ +E+ A               A++L DT                                    RK+ ++DE + LAFAG++AD RVL ++ R+ECQS+R  +  AP+V YI+R+V G++ +YT+ GG RP+GV  L+ GFD + + P +F++EPSGA++ W A+  GK        LES  +   +D     + AVRA L    GGAK  +V+VL
Sbjct:    1 MSARYDRALTVFSPDGHLFQVEYAMEAVRKGS-SVVGIRGKDCVVLGVEKYA---------------AAKLQDT---------------------------------RTVRKIAQLDEHIMLAFAGLNADARVLVNRARVECQSHRLTVEDAPTVDYISRWVAGIKQKYTQRGGVRPFGVGMLIAGFDPDGT-PQLFKTEPSGAYSSWKAATTGKGDKTIREYLESAYEPD-MDEASAVKIAVRALLDVADGGAKNIEVVVL 211          
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Match: K3WH72_GLOUD (Proteasome subunit alpha type n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WH72_GLOUD)

HSP 1 Score: 154 bits (389), Expect = 1.930e-39
Identity = 94/258 (36.43%), Postives = 140/258 (54.26%), Query Frame = 2
Query:  116 YDRAITVFSPDGKLMQVSYAEEAVKKGSLAVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRRQRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACLLVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLES--VQDLGALDWRGTAEAAVRAALAGGAKECDVLVLR 883
            YDRAITVFSPDG L QV YA EAVKKG++ V    G++S+++ +ER               +E ++L D                                     RK+C++D+ + +AFAG++AD RVL +K RLECQSYR  +  APSV Y+ARYV  +Q +YT+ GG RP+G++ L+ G D N  +P +++++PSG F+ W A+A G+ S      LE    +DL   D    A  A+   +  G+K  ++ ++R
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVKKGAVVVGV-RGKNSVILAVER---------------KEIAKLQDP---------------------------------RTVRKICKVDDHISIAFAGLTADARVLINKARLECQSYRLTVEDAPSVEYVARYVARIQQKYTQRGGVRPFGISMLIAGCDNN-GVPQLYQTDPSGTFSAWKANATGRNSTNIREFLEKNYAEDLSEEDATRLAIKALLEIVESGSKNIEIAIVR 211          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.18.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW0_ECTSI1.990e-15270.4420S proteasome subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K8Y9_9PHAE1.210e-14772.65PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A835YTL9_9STRA1.920e-4352.41Proteasome subunit-domain-containing protein (Frag... [more]
A0A5J4ZA11_PORPP2.370e-4237.64Proteasome subunit alpha type n=1 Tax=Porphyridium... [more]
A0A024TP35_9STRA4.380e-4138.35Proteasome subunit alpha type n=4 Tax=Aphanomyces ... [more]
A0A7S3YE59_HETAK6.370e-4041.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3R6Z883_9STRA6.880e-4038.93Proteasome subunit alpha type n=3 Tax=Aphanomyces ... [more]
A0A7S1TNP8_9RHOD9.220e-4041.31Proteasome subunit alpha type n=1 Tax=Erythrolobus... [more]
A0A3G2QWN8_9STRA1.430e-3938.17Proteasome subunit alpha type n=1 Tax=Thraustochyt... [more]
K3WH72_GLOUD1.930e-3936.43Proteasome subunit alpha type n=2 Tax=Pythiaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:83933..88788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEW0
PFAMsProteasome,Proteasome_A_N
Model size1759
Max annot lvl2759|Eukaryota
KEGG koko:K02731
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0019538,GO:0019773,GO:0019941,GO:0030163,GO:0031597,GO:0032991,GO:0034515,GO:0042175,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Exons5
Evalue8.14e-157
EggNOG OGsCOG0638@1|root,KOG0183@2759|Eukaryota
Ec32 ortholog description20S proteasome subunit
Ec32 orthologEc-21_005760.1
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
Cds size1062
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.18.2prot_P-littoralis_Contig694.18.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 84578..88736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791440.235975-UTR-P-littoralis_Contig694:83932..845771680791440.235975-UTR-P-littoralis_Contig694:83932..84577Pylaiella littoralis U1_48UTRP-littoralis_Contig694 83933..84577 -
1680791440.3247635-UTR-P-littoralis_Contig694:88736..887881680791440.3247635-UTR-P-littoralis_Contig694:88736..88788Pylaiella littoralis U1_48UTRP-littoralis_Contig694 88737..88788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791440.2557116-CDS-P-littoralis_Contig694:84577..849311680791440.2557116-CDS-P-littoralis_Contig694:84577..84931Pylaiella littoralis U1_48CDSP-littoralis_Contig694 84578..84931 -
1680791440.269489-CDS-P-littoralis_Contig694:85449..856191680791440.269489-CDS-P-littoralis_Contig694:85449..85619Pylaiella littoralis U1_48CDSP-littoralis_Contig694 85450..85619 -
1680791440.282921-CDS-P-littoralis_Contig694:86328..864701680791440.282921-CDS-P-littoralis_Contig694:86328..86470Pylaiella littoralis U1_48CDSP-littoralis_Contig694 86329..86470 -
1680791440.2964175-CDS-P-littoralis_Contig694:87408..876931680791440.2964175-CDS-P-littoralis_Contig694:87408..87693Pylaiella littoralis U1_48CDSP-littoralis_Contig694 87409..87693 -
1680791440.3126929-CDS-P-littoralis_Contig694:88625..887361680791440.3126929-CDS-P-littoralis_Contig694:88625..88736Pylaiella littoralis U1_48CDSP-littoralis_Contig694 88626..88736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.18.2

>prot_P-littoralis_Contig694.18.2 ID=prot_P-littoralis_Contig694.18.2|Name=mRNA_P-littoralis_Contig694.18.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=354bp
MRTPFEILAVVLAAHPSVAAVYDRAITVFSPDGKLMQVSYAEEAVKKGSL
AVAASNGRDSIVMCLERPASPSALTSADAKDTEEASELDDTGDERAHRRR
QRHKPFEGGVRDPGVEVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRV
LASKIRLECQSYRYRMGAAPSVSYIARYVGGLQHRYTRTGGARPYGVACL
LVGFDENTSLPTIFRSEPSGAFAEWTASAVGKASDKALGKLESVQDLGAL
DWRGTAEAAVRAALAGGAKECDVLVLRRRVDGAGAPAPEATEPPPPAGTE
EGGGRAGGACVEKGWRDRGEGAWSKRFLGSVGHDGVVSLEEEDWNSAVPT
RGG*
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mRNA from alignment at P-littoralis_Contig694:83933..88788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.18.2 ID=mRNA_P-littoralis_Contig694.18.2|Name=mRNA_P-littoralis_Contig694.18.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4856bp|location=Sequence derived from alignment at P-littoralis_Contig694:83933..88788- (Pylaiella littoralis U1_48)
GTCAGGTTGGGTTTCTGATAGTCTGTGCTTGAGAGTGTCTCTCTACAGGA GGATGCGAACTCCTTTTGAGATTTTAGCAGTGGTACTGGCCGCACACCCT TCTGTGGCTGCTGTCTACGACCGCGCTATCACCGTTTTCTCTCCCGATGG CAAGCTCATGCAGGTGGGTTCACACGTTCTCACAGTCCCGCTTCCAACAG CATTCTGAATTACGCCGCAATAAACACAGCAGTAGCTTCAGGGCAGCAGT GCCACGGTCCCACGGTCAGGGGCTGTTAGAAGGAATCACCAGCTCCGCGC CGCGCCTGGTACAAGTATTAACCGTGCTCTGTGGTACCGAGCGCCGTCTA CCGCCGATTATACTAATAAAGTTATTGTTTCAGTCACAGCAGTTTCGGCG AGGCACAGCGACTGATACACTCAGTTTGTGTGGATTCACAGCAGGAGTTT CCAGTTGAGACGGTAGAAGTTGGGCGAGCTCGTCGCGCATGGACACTAGC GTCACCCATGGATACTTGACAACAGCGTAAGCACCCTGTACATCGAGTAG CTGCTGTGCAAGAAGCATGTGTGTAAAGCGTTGTGGCAGCTGATGGGGAG CACCAGCACTGGCGGTTTCAAATGTATTTCAAGCGGGTATGGGGTCATGC AACCCCGGATTAGGCATTGGGAATCTTCACGACGCACTGGATTCGATCGA GTCCGTGTACAGCAGTACTGCTGTAGCACGATCTACTTGTGCGCCGACTT GTCCTTCACGCCACATGCAAATGCGAGTGCAACCATTCATCTATTTCTTA GCCTTGCGATACAGCAGGCTCGTCGTATTGCAATGAACGACGGAAGCTAA GTCTTAGTCTTGTGTGTCATGATTGAAAACATCCGTCCATGCTGCCTTCA TCTATACATGCACCTGTGTTTTTAGTTGAAGACGCTTAGAAAAAAGATCG TCTCTGTGCCTGCTGTTTCACCTCACTCTTCGCCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCATATTGTTGGCTCTTGGGTACAACCGATTACAACCGATCATAGGTTTC CTACGCGGAAGAAGCGGTTAAGAAAGGAAGCCTGGCCGTCGCCGCTTCCA ACGGCCGCGATTCCATCGTCATGTGCCTCGAACGCCCCGCGAGTCCATCG GCATTAACATCAGCAGACGCCAAAGACACAGAGGAGGCGAGCGAGCTCGA TGACACTGGCGACGAGCGTGCACACCGCAGGCGACAGAGACACAAACCCT TCGAAGGAGGCGTGCGCGATCCGGGGGTCGAGGTGGGGATTGTGGACAGC GCCAACAATCAGGATCGGAAGCTATGCGAGGTATGAATGTAATCGTATGC ATGTGTGTTATATGTGTGCTGTGCTATGCTATGCTATGCTATGCTATGCT ATGCTATGCTATGCTATGCTATGCTATGCTTTGCTATGTTATGCGAGGTA TGAATGTGATCGTATGTTGTAGGGGGTGCCTGTTTAAATCTCCCCCTTGG GGGGGTGAGGCGTCACCGTAAACCGCCCCGCTCGTACCAAAACCTCTCTA CGTGGATCTTTGAGCTTTCGTGTAGGATGATGGGCTATTTGACTGAATGA ACACCCAGGCGGTTTCTCGAGTGAAAACCCAGGCGGTTTCTCTTGGAGTT TTTACTTGACTTGCCCTAGCCGCCGCTCAGTGTTTCCTGTGCTCTAGTAT GAGGATACTTTTTCAAGAGCGGTACATCCCTCGTAGCCTTTACCCGGTCT TCCGGCAACCCAAACATACCAGCTACGGATTGGAAAAATAATTTTCACCG GTGGAAGTACCTGGTATCATTGTGTTTATTTTTTCTTACAACTTTTTTTC GTATTCCGTTGTCCAGAACGCGTGGCGAAGCCGCGCTTGAGTACCATCCG CGTGCATGTTGGAGCAAGGGTCAGGGTGAGCCCTAGGGTACCATCCGCGT ATTCGGTTAGGATTAGGGTTTGGGTTGGGTACGGTCGACGCCCCACCCTG ATATAAAACGAAAAAAAGCCCAACAGCGGCGAACCCCGAAAACGAGAAAA ATCCCAATGAATGTTCAGATCTTACAGGAGTGTTTATCTGGCAGGTCATG GGTGCCAACGTCGTGAAGAGCCCTCTTCGGAAGACCGATTACGAGCTCAC TGCAAACCAGGCGTCAGATACTATAATGCTTTCGTACGCTTGTGCTCACA ACCCCCCCCCTGCCGGTTCCTGCGCGCGCCTCTCGGCCTGTTTGTTTTGG CTTTCAACTTTCACAAAGATTGACGAGGGAGTTTATCTGGCGTTCGCAGG CATTTCGGCGGACGGGCGCGTCTTGGCATCCAAGATAAGACTTGAGTGCC AGAGCTACCGCTATCGCATGGGAGCCGCGCCGAGCGTGAGCTACATTGCG AGATATGTCGGTATGTCGGCATCCTTAGTCTGTCGATGGGTCTGGTTTCT GGTTGCCATTGCACGCTCATCGACCGTCTGATCGTCATGGCAAGGCCGGT AGAGGAGTCTGCTGTTTTCGGCGCGTATGCTGACCCATGGGGATTATGGT AGACTTCTCTGCTGCTGCTGCTGCTGCTCCACAGATGTATGGACGTGCTA CATACCCTCACGATGTTTGCCAAGACTTGTGTTTTTACCGTTTCCCACGA CTTGTATTTCTACCTTTGTACGCATCGCGCGTTTTGATGCTGTATGAATT TTGTTGTCAGGTGGTACGTTTGCAACACCGCCGTTACACCCGCGTAAGCG GAGTCGTGTGTCCCGCCACTGTCTGCGAATATTTTGCTCCCGAACAACCT GTCTCAGGGTTGAACTACGACTACTGTACTTGTACATGCATGTGTTTTCT TGTTTCACGATGCATGTTTGGGGGTGCCATCTGGGCTTTTGTTTGTCCCA CCACTTCAAATGTATTGCCAACGAACAACCGGTCTGCATTTTGATCTGCC TCACTGGTATGATATCACACATCCTCTGTTTTCCTGTTTTTCCGTTTTTT TCCTGAGTGGTTTTCATGGCGTAATCGGTGGGCCATGGGCATTTTTTCTA CTGTGTGTATGTCGGCGTGCCGTGTTTCGCATGTATCATATCATATGTAT GCACCGCCGTGTTTGGCAGGAGGGCTTCAACACCGCTACACTAGAACCGG TGGGGCTCGCCCGTACGGCGTGGCGTGCCTCCTCGTCGGTTTCGACGAGA ACACCTCGCTTCCCACCATCTTCCGGTCGGAGCCGTCCGGGGCATTCGCG GAGTGGACAGCTTCGGCCGTCGGAAAAGCTTCGGACAAGGTACAGATCAT GTATCATACAATACACGGAAGTAAATAGATTGTAGAATGTAATCTCTTCG AGGTCTCTACATTTTTCGGGTTCATGTCCTGCCCCCTCCCCCCCCCCCCC CTCCCACCGGGCTTTTCGGGGATGGGCGCCTCTAGGATGAGCGAGGGGTT CGGATGACGGCGCAGAGAAGCCTGGTCCTCTCCTCCCCGCCTCTTCCGCT ACCGCCCATCTCTTCTCGCCTATTTTCTCCCTCTCTCTCTCTCTCTCTCT TGCTTGCGGCATGCCTCAAATTCATCGCCCAGGTTTGTGTCATGCTCGTG CGGTGTGCGTACAGTAGGCTGTACAGGAAACAAACTTAAGGGAAACGCTC GCGGCATGCGTGACATTCCCCGACTATTTTTCATGCCATGCTTGTACGTA TGTGTGTGCGTGTGTGTGAAAACTGTGTGCAGGCTTTAGGAAAGCTTGAG ACTATTTTTCATGCCATGCTTGTATGATACGAAGTATGTGTGAAAACTGC TGTGCAGGCCTTAGGAAAGCTTGAGTCGGTGCAGGACCTCGGCGCTCTGG ACTGGCGCGGCACTGCAGAGGCCGCCGTGAGAGCCGCCCTAGCCGGAGGC GCAAAAGAATGCGACGTTCTAGTCTTGCGCCGCAGGGTGGACGGGGCTGG AGCACCAGCTCCAGAAGCGACAGAACCACCGCCACCAGCGGGGACGGAGG AAGGAGGAGGCAGGGCGGGGGGGGCGTGCGTGGAGAAGGGGTGGAGAGAT AGAGGGGAGGGGGCGTGGTCGAAGCGTTTTTTGGGGTCGGTGGGACATGA CGGGGTCGTATCGCTGGAGGAGGAAGATTGGAACTCAGCAGTCCCGACAC GAGGCGGATAGTCTCTATCGCGCGCGAGGGGGGTAGGGAAGGGCCATGAC TTTGCTGAGGTTGGGGCAACGCCCCTCCGTGCTAGTCAATCTGTGCACGG CATTGCTGTAGCTGCTGCCTGCCGGAGTTGGCCAGGAGGTATCAGTCGGT GAGCCATGCCGTTTCTGATTACTAGTCGAATGAACGACGGCGGTGCTGGC GAAACGTGGAGCGTTTGGTCTTGTTTGTATGATATGTTTGTACAGTAGTG GAGTTGAGATTGCCGATCGAGAAACATGGATGGGGAGTGCGGGCTGGTCC TCGCTCAGTTCGTCTGCTGTTGAATCTAGAAACGCGTGACATCACAGGCC GTGGGCACGGCAGGCCAGAGGCACAAAATACGCGCCTTAAGGAAAGGACG AAACAAAACAGAAACATGCCACACACAACAGCGTGTGTTTGCTGATCCAG CTTTTGCCAAGCCGTCTGCAAAGCCGAGCCGCACCCAGGAAGAGGTATAA TAAGCGGACGCAGCGTCTGGCTACCGTGGGTAGCGTTTGGTTTACCACAC CCCCTGGACCGATTTTCAAAGCACAACTACTCCACAGCGGAAAGAGTGCG TGCCGGAAAGGGCGGCGTTCGAACCATCTCGTCGAGAGCTTTCCAAACAC ATGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:83933..88788-

>mRNA_P-littoralis_Contig694.18.2 ID=mRNA_P-littoralis_Contig694.18.2|Name=mRNA_P-littoralis_Contig694.18.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig694:83933..88788- (Pylaiella littoralis U1_48)
ATGCGAACTCCTTTTGAGATTTTAGCAGTGGTACTGGCCGCACACCCTTC
TGTGGCTGCTGTCTACGACCGCGCTATCACCGTTTTCTCTCCCGATGGCA
AGCTCATGCAGGTTTCCTACGCGGAAGAAGCGGTTAAGAAAGGAAGCCTG
GCCGTCGCCGCTTCCAACGGCCGCGATTCCATCGTCATGTGCCTCGAACG
CCCCGCGAGTCCATCGGCATTAACATCAGCAGACGCCAAAGACACAGAGG
AGGCGAGCGAGCTCGATGACACTGGCGACGAGCGTGCACACCGCAGGCGA
CAGAGACACAAACCCTTCGAAGGAGGCGTGCGCGATCCGGGGGTCGAGGT
GGGGATTGTGGACAGCGCCAACAATCAGGATCGGAAGCTATGCGAGATTG
ACGAGGGAGTTTATCTGGCGTTCGCAGGCATTTCGGCGGACGGGCGCGTC
TTGGCATCCAAGATAAGACTTGAGTGCCAGAGCTACCGCTATCGCATGGG
AGCCGCGCCGAGCGTGAGCTACATTGCGAGATATGTCGGAGGGCTTCAAC
ACCGCTACACTAGAACCGGTGGGGCTCGCCCGTACGGCGTGGCGTGCCTC
CTCGTCGGTTTCGACGAGAACACCTCGCTTCCCACCATCTTCCGGTCGGA
GCCGTCCGGGGCATTCGCGGAGTGGACAGCTTCGGCCGTCGGAAAAGCTT
CGGACAAGGCCTTAGGAAAGCTTGAGTCGGTGCAGGACCTCGGCGCTCTG
GACTGGCGCGGCACTGCAGAGGCCGCCGTGAGAGCCGCCCTAGCCGGAGG
CGCAAAAGAATGCGACGTTCTAGTCTTGCGCCGCAGGGTGGACGGGGCTG
GAGCACCAGCTCCAGAAGCGACAGAACCACCGCCACCAGCGGGGACGGAG
GAAGGAGGAGGCAGGGCGGGGGGGGCGTGCGTGGAGAAGGGGTGGAGAGA
TAGAGGGGAGGGGGCGTGGTCGAAGCGTTTTTTGGGGTCGGTGGGACATG
ACGGGGTCGTATCGCTGGAGGAGGAAGATTGGAACTCAGCAGTCCCGACA
CGAGGCGGATAG
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