mRNA_P-littoralis_Contig694.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.16.1
Unique NamemRNA_P-littoralis_Contig694.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5L5L9_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L9_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 9.140e-76
Identity = 135/138 (97.83%), Postives = 136/138 (98.55%), Query Frame = 3
Query:  606 PQETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1019
            P  +RSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD
Sbjct:  114 PALSRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 251          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5L1D8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D8_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.150e-75
Identity = 133/138 (96.38%), Postives = 134/138 (97.10%), Query Frame = 3
Query:  606 PQETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1019
            P  +RSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSS GSVGDMPITTGHG LIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD
Sbjct:  114 PALSRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETSSSYGSVGDMPITTGHGHLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 251          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5JM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM40_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.890e-29
Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 3
Query:  672 MARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVC---GHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGLD 1019
            +AR MGA+++RA++EK XXXXX     SSVG EV PVE  AV+LE+AP  G    GS+C   G +E SSSC SVGDM I +GHGLLIEE+CSGQEM+DAEE ++D CDTSSDGFLDGLD
Sbjct:   88 LARTMGAWMQRARREKXXXXXXX---XSSVGGEVGPVENPAVDLEVAPHAGSPGGGSICADSGDLEASSSCSSVGDMSIASGHGLLIEEFCSGQEMRDAEEVLEDNCDTSSDGFLDGLD 203          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5KM05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM05_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.750e-28
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 3
Query:  672 MARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVC---GHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDG 1001
            +AR MGA+++RA++EK XXXXX    SSSVG EV PVE  AV+LE+AP  GP   GSVC   GH+E SSSC SVGDM I +GHGLLIEE+CSGQEM+DAEE ++D CDT SDG
Sbjct:   89 LARTMGAWMQRARREKXXXXXXX---SSSVGGEVGPVENPAVDLEVAPHAGPPGRGSVCADSGHLEASSSCSSVGDMSIASGHGLLIEEFCSGQEMRDAEEVLEDNCDTLSDG 198          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5JH07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH07_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.500e-27
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 3
Query:  612 ETRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQEKQXXXXXEEVESSSVGNEVRPVEESAVNLEIAPPTGPSN-DGSVCGHVETSSSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSS 995
            ++RSQ++RNRK+L+ Q+   MAR MGAFL RA   +QXXXXX      +VG EV PVEE A  LE+AP T P    G  C H E  S+CGSVGDM I +GHGL IEEWCS QEM+DAEE +++ CDTSS
Sbjct:  120 KSRSQQYRNRKKLIAQQVTAMARTMGAFLSRA---RQXXXXXXXXXXXAVGGEVGPVEEPAEGLEVAPHTSPGGAGGGACEHAEAGSNCGSVGDMSIDSGHGLGIEEWCSRQEMEDAEEVLENYCDTSS 245          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5KDQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.010e-23
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  317 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVDEE-GTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFA 574
            R KKKK G RG DGRAVPKKPKPAQQ+D  S G+GDA  DG   ADLM+VD+E G AAA+ED NDE+WCDED+SGA+ S+GGGQSIL FA
Sbjct:    3 RPKKKKTGKRGADGRAVPKKPKPAQQHDRPSRGAGDALSDGHDSADLMDVDQEQGKAAADEDGNDEDWCDEDTSGAH-SNGGGQSILSFA 91          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5KB31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB31_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.790e-23
Identity = 71/111 (63.96%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  317 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASAAARAARNAEPKIPK 637
            R KKKK   RG DGRAVPKKPKPAQQ+D  S G+GDA  DG    DLM+VD EEG AAA+ED NDE+WCDED+SGA+ S+G GQSIL FA  SVASA   A   AE   P+
Sbjct:    3 RRKKKKIDKRGADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSVDLMDVDQEEGKAAADEDGNDEDWCDEDTSGAH-SNGSGQSILSFAKWSVASAGRDAGSAAEKNPPR 112          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5KYZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYZ1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.500e-21
Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 2
Query:  317 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASA---AARAARNAEPKI 631
            R K+KK G R  DGRAVPKKPKPAQQ+D  S G+GDA  DG   ADLM+VD EEG AAA+E+ NDE+WCDED+SG + S+G G+SIL FA  SVASA   A  AA+N  P++
Sbjct:    3 RPKEKKIGKRRADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSADLMDVDQEEGKAAADENGNDEDWCDEDTSGVH-SNGRGRSILSFAKWSVASAGRDARSAAKNYPPRV 113          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5KJS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.930e-20
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 2
Query:  317 RAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDG---ADLMEVD-EEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASA 595
            R KKKK G    DGRAVPKKPKPAQQ+D  S G+GDA  DG   ADLM+VD EEG AAA+ED NDE+WCDED+SGA+ S+G GQSIL FA  SVASA
Sbjct:    3 RPKKKKIGKCEADGRAVPKKPKPAQQHDLPSRGAGDALSDGHDSADLMDVDQEEGKAAADEDGNDEDWCDEDTSGAH-SNGRGQSILSFAKWSVASA 98          
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Match: A0A6H5KFA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.820e-20
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  299 MGKAKGRAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPV---DGADLMEVDEE-GTAAANEDANDEEWCDEDSSGANGSSGGGQSIL 565
            MGK +GR+ KK FG RG DGRAV KKP+P QQ+D  SPG+G A     DGA LM+VDEE GTAAA+ED NDE+W DED SGA+ SSGGGQSIL
Sbjct:    1 MGKPQGRSNKKTFGPRGADGRAVSKKPRPTQQHDLPSPGAGGALSGGHDGAILMDVDEEEGTAAADEDVNDEDWGDEDPSGAH-SSGGGQSIL 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L5L9_9PHAE9.140e-7697.83Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1D8_9PHAE1.150e-7596.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JM40_9PHAE3.890e-2964.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM05_9PHAE5.750e-2865.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH07_9PHAE1.500e-2758.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDQ9_9PHAE2.010e-2371.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB31_9PHAE3.790e-2363.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYZ1_9PHAE2.500e-2161.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS6_9PHAE4.930e-2069.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA3_9PHAE5.820e-2067.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:45770..46822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1021
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791440.1498322-UTR-P-littoralis_Contig694:45769..460241680791440.1498322-UTR-P-littoralis_Contig694:45769..46024Pylaiella littoralis U1_48UTRP-littoralis_Contig694 45770..46024 -
1680791440.197413-UTR-P-littoralis_Contig694:46524..468221680791440.197413-UTR-P-littoralis_Contig694:46524..46822Pylaiella littoralis U1_48UTRP-littoralis_Contig694 46525..46822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791440.167245-CDS-P-littoralis_Contig694:46024..461711680791440.167245-CDS-P-littoralis_Contig694:46024..46171Pylaiella littoralis U1_48CDSP-littoralis_Contig694 46025..46171 -
1680791440.1827078-CDS-P-littoralis_Contig694:46203..465241680791440.1827078-CDS-P-littoralis_Contig694:46203..46524Pylaiella littoralis U1_48CDSP-littoralis_Contig694 46204..46524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.16.1prot_P-littoralis_Contig694.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 46025..46524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.16.1

>prot_P-littoralis_Contig694.16.1 ID=prot_P-littoralis_Contig694.16.1|Name=mRNA_P-littoralis_Contig694.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MGKAKGRAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDGADL
MEVDEEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASAA
ARAARNAEPKIPKQKKASRTRNEGHGTIHGSILAAGAAGKAATVGAGRGG
ELLCR*
back to top

mRNA from alignment at P-littoralis_Contig694:45770..46822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.16.1 ID=mRNA_P-littoralis_Contig694.16.1|Name=mRNA_P-littoralis_Contig694.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1053bp|location=Sequence derived from alignment at P-littoralis_Contig694:45770..46822- (Pylaiella littoralis U1_48)
TGAAATATTCGAAATTGACGGAGATATACAGGGAAAACTTGATTTAAAGG GTCAACTTGTTTTGTTTTATATGCAATAACTAACCGACCGATTTCAAAAT AGAGTGCGGCAAACGATTCCTCTCGACCATCCCCAGGTGGGAATTTCTTG GTTTTGCTGGGAAAAATCTGATTCTCGAGATATTCGCGTTGTTGTTGTTC CGCGCCATGCGGTGACTTTTTTTTTTCCTGGGCGCACGCGGTGCCCAACA ACTGCGCACGCGGCAACCCGAACAACACAAAACACGCACACAAGCACCAT GGGGAAGGCTAAGGGACGGGCAAAGAAGAAGAAATTCGGAAATCGCGGAC CCGATGGCAGGGCGGTTCCTAAAAAGCCGAAGCCGGCGCAGCAAAATGAT AACTCATCGCCCGGCTCTGGTGATGCACCAGTCGACGGCGCGGATTTGAT GGAGGTGGATGAAGAAGGGACGGCAGCGGCAAACGAGGACGCCAACGATG AGGAGTGGTGCGATGAGGATTCCAGCGGTGCAAACGGCAGCAGTGGTGGA GGTCAGTCGATACTGCGTTTTGCGCACCGGTCTGTAGCGTCCGCAGCAGC GCGCGCCGCAAGAAACGCGGCGAAAAAAATCTCGCCGCCTGCACTGTCCA GGAGCCAAAAATTCCGAAACAGAAAAAGGCTTCTCGGACAAGAAACGAAG GACATGGCACGATTCATGGGAGCATTCTTGCGGCGGGCGCAGCAGGAAAA GCAGCAACAGTCGGAGCAGGAAGAGGTGGAGAGCTCCTCTGTCGGTAACG AGGTTCGTCCTGTAGAGGAATCGGCGGTGAATTTAGAGATTGCACCGCCT ACTGGTCCCTCGAACGACGGCAGCGTGTGCGGACATGTAGAGACCAGCAG TAGCTGTGGCAGTGTCGGCGACATGCCCATAACCACGGGTCACGGGCTTC TGATAGAGGAGTGGTGTAGCGGTCAGGAGATGAAGGACGCCGAAGAAGCG ATGGATGACATTTGCGATACCTCATCAGACGGGTTTCTTGACGGTTTGGA TTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig694:45770..46822-

>mRNA_P-littoralis_Contig694.16.1 ID=mRNA_P-littoralis_Contig694.16.1|Name=mRNA_P-littoralis_Contig694.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig694:45770..46822- (Pylaiella littoralis U1_48)
ATGGGGAAGGCTAAGGGACGGGCAAAGAAGAAGAAATTCGGAAATCGCGG
ACCCGATGGCAGGGCGGTTCCTAAAAAGCCGAAGCCGGCGCAGCAAAATG
ATAACTCATCGCCCGGCTCTGGTGATGCACCAGTCGACGGCGCGGATTTG
ATGGAGGTGGATGAAGAAGGGACGGCAGCGGCAAACGAGGACGCCAACGA
TGAGGAGTGGTGCGATGAGGATTCCAGCGGTGCAAACGGCAGCAGTGGTG
GAGGTCAGTCGATACTGCGTTTTGCGCACCGGTCTGTAGCGTCCGCAGCA
GCGCGCGCCGCAAGAAACGCGGAGCCAAAAATTCCGAAACAGAAAAAGGC
TTCTCGGACAAGAAACGAAGGACATGGCACGATTCATGGGAGCATTCTTG
CGGCGGGCGCAGCAGGAAAAGCAGCAACAGTCGGAGCAGGAAGAGGTGGA
GAGCTCCTCTGTCGGTAA
back to top