mRNA_P-littoralis_Contig692.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig692.18.1
Unique NamemRNA_P-littoralis_Contig692.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 7.050e-58
Identity = 85/123 (69.11%), Postives = 104/123 (84.55%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369
            QA+CDAQYRI AW MNCPGSQNDRTAF  SGF KLL  LP+G+++VGDAAY  S+ V+VP+PGT +S SQDA NYY+SQCR+AIEQT+GILVRRWGILW+P+E+R+     +V ++VRLHNFC
Sbjct:  211 QAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFC 333          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 7.680e-58
Identity = 83/123 (67.48%), Postives = 104/123 (84.55%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369
            QA+CDAQYRI AWTM+CPGSQNDRTAF  + F KLL  LP+G+++VGDAAY  S+ V+VP+PGT +S SQDA NYY+SQCR+AIEQT+GILVRRWGILW+P+E+R+     +V ++VRLHNFC
Sbjct:   59 QAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFC 181          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.510e-53
Identity = 79/122 (64.75%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C+A+Y+I AWTMNCPGS NDRTAFK SGF ++L+ LPKG YIVGD AYP SD VLVPYPGT ++ SQD+ N+Y SQ RI IEQ FG +V+ WGILW+PL+++LG V+ ++ ++VRLHNF
Sbjct:  152 QAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMVKTWGILWRPLQVKLGRVSSVMNAVVRLHNF 273          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.730e-51
Identity = 80/122 (65.57%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            Q +C+A+Y I AWTMNCPGS NDRTAFK S F  +L+ LP G YIVGDAAYP SD VLVPYPGT ++ SQDA N+Y SQ RI+IEQ FGI+V+ WGILW+PL++RL  V+ ++ S+VRLHNF
Sbjct:  218 QGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNF 339          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 6.220e-47
Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            Q IC+A Y I  WTMNCPGSQNDRTAFK SGF  LL  +P   +IVGDAAYP S+ VLVP PGT ++ SQDA N+Y SQ RI+IEQ FGILV+ W ILWKPL +RL  V  ++ ++VRLHNF
Sbjct:  222 QGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNF 343          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.260e-45
Identity = 76/122 (62.30%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    4 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369
            A+CDAQYRI AW MNCPGSQNDRTAF  SGF KLL  LP+G+++VGDAAY  S+ V+VP+PGT +S SQDA NYY+SQCR+AIEQT+GILV   G+    +E        +V ++VRLHNFC
Sbjct:  141 AVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSVVGMAKVVVE-------HVVNAVVRLHNFC 255          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5K6X9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.990e-34
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C   YR  A     PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG ++   +D+ N++LSQ R+ IEQ+FGILV  WGILW PL ++LG    L+ +L+ LHNF
Sbjct:   61 QAMCTVNYRFCAMPAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWTPLRMQLGGRGDLITALLHLHNF 182          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5KNZ9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 7.530e-34
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG ++   +D+ N++LSQ R+ IEQ+FGILV  WGILW+PL ++LG  A L+ +L  LHNF
Sbjct:  252 QAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQLGGRADLITALFHLHNF 373          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5KQF5_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF5_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 8.790e-34
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG  +   +D+ N++LSQ R+ IEQ+FGILV  WGILW+PL ++    A L+ +L  LHNF
Sbjct:   95 QAMCTADYRFYAMSATSPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNF 216          
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Match: A0A6H5L3C4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.220e-32
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG  +   +D+ N++LSQ R+ IEQ+FGILV  WGILW+PL ++ G  A L+ +L  LHNF
Sbjct:  289 QAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPPGEDSFNFHLSQVRVMIEQSFGILVATWGILWRPLHVQYGGRADLITALFHLHNF 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig692.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6B6_9PHAE7.050e-5869.11DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE7.680e-5867.48DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE3.510e-5364.75DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE3.730e-5165.57DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE6.220e-4763.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE6.260e-4562.30DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6X9_9PHAE5.990e-3447.54DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KNZ9_9PHAE7.530e-3449.18DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KQF5_9PHAE8.790e-3447.54DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5L3C4_9PHAE1.220e-3248.36DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig692contigP-littoralis_Contig692:93591..94209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI53028
PFAMsDDE_Tnp_4
Model size369
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.06e-25
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size369
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791436.525485-CDS-P-littoralis_Contig692:93590..936861680791436.525485-CDS-P-littoralis_Contig692:93590..93686Pylaiella littoralis U1_48CDSP-littoralis_Contig692 93591..93686 -
1680791436.545034-CDS-P-littoralis_Contig692:93936..942091680791436.545034-CDS-P-littoralis_Contig692:93936..94209Pylaiella littoralis U1_48CDSP-littoralis_Contig692 93937..94209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig692.18.1prot_P-littoralis_Contig692.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig692 93591..94209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig692.18.1

>prot_P-littoralis_Contig692.18.1 ID=prot_P-littoralis_Contig692.18.1|Name=mRNA_P-littoralis_Contig692.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAA
YPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWK
PLELRLGNVAPLVESLVRLHNFC
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mRNA from alignment at P-littoralis_Contig692:93591..94209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig692.18.1 ID=mRNA_P-littoralis_Contig692.18.1|Name=mRNA_P-littoralis_Contig692.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=619bp|location=Sequence derived from alignment at P-littoralis_Contig692:93591..94209- (Pylaiella littoralis U1_48)
CAGGCTATCTGCGACGCGCAATACAGGATTAGGGCATGGACTATGAACTG CCCGGGAAGCCAAAACGACCGCACGGCCTTTAAGGTTTCCGGCTTCCCCA AGCTCCTCGAAGCTTTGCCGAAAGGTTACTACATCGTGGGGGACGCGGCG TACCCGGGTTCGGACGTCGTTCTCGTTCCGTACCCGGGAACGAAGGTGTC GGATAGCCAGGATGCGTTGAACTACTACCTGTCTCAGTGCAGGATTGCCA TCGAGCAGACGTTCGGGATCCTGGTGAGTATCAAGTGTCAACTTCTGTGT TCGCATAGAACGGGTGCTGTTGTTGTCGGATACTATTTTGTTCTCGTGCA CGTAAAACTTAGGTTTTACGTGTGGGTCTGCACGGGGTGATTTTTTTTCT TCGGAACAGTCTTGTTGCGTGAGTTTTGCTGAACCTTATAGATCACGAGC ACACGAGCAGGTTTCTATATCATTCATTCTTGACTGTCCACCTATTTTTG GCGTTTCTCTTGATGATATGTAGGTCAGGAGGTGGGGCATCCTCTGGAAG CCGTTGGAGCTCCGGCTGGGCAACGTTGCCCCGCTTGTCGAGAGTCTCGT TCGCCTGCACAACTTCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig692:93591..94209-

>mRNA_P-littoralis_Contig692.18.1 ID=mRNA_P-littoralis_Contig692.18.1|Name=mRNA_P-littoralis_Contig692.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig692:93591..94209- (Pylaiella littoralis U1_48)
CAGGCTATCTGCGACGCGCAATACAGGATTAGGGCATGGACTATGAACTG
CCCGGGAAGCCAAAACGACCGCACGGCCTTTAAGGTTTCCGGCTTCCCCA
AGCTCCTCGAAGCTTTGCCGAAAGGTTACTACATCGTGGGGGACGCGGCG
TACCCGGGTTCGGACGTCGTTCTCGTTCCGTACCCGGGAACGAAGGTGTC
GGATAGCCAGGATGCGTTGAACTACTACCTGTCTCAGTGCAGGATTGCCA
TCGAGCAGACGTTCGGGATCCTGGTCAGGAGGTGGGGCATCCTCTGGAAG
CCGTTGGAGCTCCGGCTGGGCAACGTTGCCCCGCTTGTCGAGAGTCTCGT
TCGCCTGCACAACTTCTGC
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