mRNA_P-littoralis_Contig691.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig691.12.1
Unique NamemRNA_P-littoralis_Contig691.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig691.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig691contigP-littoralis_Contig691:89451..89990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791435.2520876-UTR-P-littoralis_Contig691:89450..894591680791435.2520876-UTR-P-littoralis_Contig691:89450..89459Pylaiella littoralis U1_48UTRP-littoralis_Contig691 89451..89459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791435.2638865-CDS-P-littoralis_Contig691:89459..895871680791435.2638865-CDS-P-littoralis_Contig691:89459..89587Pylaiella littoralis U1_48CDSP-littoralis_Contig691 89460..89587 +
1680791435.2729728-CDS-P-littoralis_Contig691:89875..899901680791435.2729728-CDS-P-littoralis_Contig691:89875..89990Pylaiella littoralis U1_48CDSP-littoralis_Contig691 89876..89990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig691.12.1prot_P-littoralis_Contig691.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig691 89460..89990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig691.12.1

>prot_P-littoralis_Contig691.12.1 ID=prot_P-littoralis_Contig691.12.1|Name=mRNA_P-littoralis_Contig691.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
MDKKLAAMEDSLFKRLREDVLEQTRDGSRKPARSPSSSPMWTRSDKRANR
ERQSSPLDLRSRKRKDEHNSPNTPADARRNR
back to top

mRNA from alignment at P-littoralis_Contig691:89451..89990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig691.12.1 ID=mRNA_P-littoralis_Contig691.12.1|Name=mRNA_P-littoralis_Contig691.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig691:89451..89990+ (Pylaiella littoralis U1_48)
GACAACATTATGGACAAGAAGCTAGCGGCGATGGAAGACTCGTTGTTCAA
GCGTCTTCGCGAGGATGTCCTCGAGCAGACTCGGGACGGCAGTCGCAAGC
CGGCGCGCTCGCCATCCTCATCGCCCATGTGGACGAGGTGACGTCTCTTA
CCTTTTTGTTTTTGGGTAAGGTTTTATCTGCGAATTTCATTAACGACGGC
GTTGTAAATGTACTTCGTACGTAATCGCTGTCGACAAGGTTACTGTTCGT
GATGTATTGCATATGCCTGCAAAAATAATAAATAAGTTGTGCAGGAGGGG
TATTACGGTGCAGTTTTTTCGTGTTACAATTGACGCGTGCACCCAGCCTA
TGTTTCAGGCTTCGAACTTTAGTTTATTGCTTGTTGATATCGCGTTCGGG
CGTTCACCTGTGCGTCATAAATAAGGTCCGACAAACGTGCAAACCGCGAA
CGCCAGTCGTCCCCGCTCGACCTGAGGAGCCGCAAACGGAAGGACGAACA
CAACTCTCCGAACACGCCGGCCGACGCGAGGAGGAATCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig691:89451..89990+

>mRNA_P-littoralis_Contig691.12.1 ID=mRNA_P-littoralis_Contig691.12.1|Name=mRNA_P-littoralis_Contig691.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig691:89451..89990+ (Pylaiella littoralis U1_48)
ATGGACAAGAAGCTAGCGGCGATGGAAGACTCGTTGTTCAAGCGTCTTCG
CGAGGATGTCCTCGAGCAGACTCGGGACGGCAGTCGCAAGCCGGCGCGCT
CGCCATCCTCATCGCCCATGTGGACGAGGTCCGACAAACGTGCAAACCGC
GAACGCCAGTCGTCCCCGCTCGACCTGAGGAGCCGCAAACGGAAGGACGA
ACACAACTCTCCGAACACGCCGGCCGACGCGAGGAGGAATCGC
back to top