mRNA_P-littoralis_Contig69.76.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.76.1
Unique NamemRNA_P-littoralis_Contig69.76.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:310637..311260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size604
Hectar predicted targeting categoryother localisation
Exons2
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791427.812894-CDS-P-littoralis_Contig69:310636..3108061680791427.812894-CDS-P-littoralis_Contig69:310636..310806Pylaiella littoralis U1_48CDSP-littoralis_Contig69 310637..310806 -
1680791427.8258584-CDS-P-littoralis_Contig69:310826..3110281680791427.8258584-CDS-P-littoralis_Contig69:310826..311028Pylaiella littoralis U1_48CDSP-littoralis_Contig69 310827..311028 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791427.845564-UTR-P-littoralis_Contig69:311028..3112601680791427.845564-UTR-P-littoralis_Contig69:311028..311260Pylaiella littoralis U1_48UTRP-littoralis_Contig69 311029..311260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.76.1prot_P-littoralis_Contig69.76.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 310637..311028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.76.1

>prot_P-littoralis_Contig69.76.1 ID=prot_P-littoralis_Contig69.76.1|Name=mRNA_P-littoralis_Contig69.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MRAVPPLSPALEGAVAAAAAAAAVATAAGGKVDPPLADVDLSHGGANYDA
PAHPGGGAGEGDEQDAPHAAATHQAPSATGRRPGTASCHHPGPTTVAAAA
AAAAAATAAARPRPTSWRSSPTYR
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mRNA from alignment at P-littoralis_Contig69:310637..311260-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.76.1 ID=mRNA_P-littoralis_Contig69.76.1|Name=mRNA_P-littoralis_Contig69.76.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig69:310637..311260- (Pylaiella littoralis U1_48)
GCAGCGGTAGCGTCCCCGAAGACGTGCGTGCCACCTCACATTTGAAAATC
AGGCATGGGAAAAATCAACTACTACCACTGCGCCTTGCCAGTACAGCAAG
CGAAGAGTACGCCGCGTTGTGCCTCGGTTGTGTTGAATAGCAGTCACAAG
AGTGGTGCAACAAGAGTAGACGAAAATAGTGATTTACAGGTCTTTGAATG
ACTTTCGTCTGGAGCTAGCTGCTGCATTCATCATGAGGGCGGTTCCACCG
CTCTCTCCAGCCTTGGAGGGGGCAGTAGCAGCGGCTGCTGCTGCTGCCGC
CGTGGCCACTGCAGCCGGGGGAAAAGTCGACCCGCCCCTTGCTGACGTCG
ACCTCAGCCACGGCGGGGCCAACTACGACGCACCTGCACATCCGGGAGGC
GGCGCGGGGGAAGGCGATGAGCAAGACGCTCCTCCTCCTGCGCAAATCGC
CGGCATGCTGCAGCAACTCATCAGGCTCCATCAGCAACAGGTCGTCGCCC
AGGAACAGCAAGCTGCCACCATCCAGGGCCTACAACAGTAGCTGCAGCAG
CTGCAGCAGCTGCAGCAGCTACAGCAGCCGCCCGCCCTCGCCCAACCAGC
TGGCGGAGTTCTCCCACATATCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:310637..311260-

>mRNA_P-littoralis_Contig69.76.1 ID=mRNA_P-littoralis_Contig69.76.1|Name=mRNA_P-littoralis_Contig69.76.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig69:310637..311260- (Pylaiella littoralis U1_48)
ATGAGGGCGGTTCCACCGCTCTCTCCAGCCTTGGAGGGGGCAGTAGCAGC
GGCTGCTGCTGCTGCCGCCGTGGCCACTGCAGCCGGGGGAAAAGTCGACC
CGCCCCTTGCTGACGTCGACCTCAGCCACGGCGGGGCCAACTACGACGCA
CCTGCACATCCGGGAGGCGGCGCGGGGGAAGGCGATGAGCAAGACGCTCC
TCATGCTGCAGCAACTCATCAGGCTCCATCAGCAACAGGTCGTCGCCCAG
GAACAGCAAGCTGCCACCATCCAGGGCCTACAACAGTAGCTGCAGCAGCT
GCAGCAGCTGCAGCAGCTACAGCAGCCGCCCGCCCTCGCCCAACCAGCTG
GCGGAGTTCTCCCACATATCGC
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