mRNA_P-littoralis_Contig69.153.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.153.1
Unique NamemRNA_P-littoralis_Contig69.153.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:660738..661970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1099
Hectar predicted targeting categoryother localisation
Exons2
Cds size1095
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791428.311029-CDS-P-littoralis_Contig69:660739..6613151680791428.311029-CDS-P-littoralis_Contig69:660739..661315Pylaiella littoralis U1_48CDSP-littoralis_Contig69 660740..661315 -
1680791428.3252745-CDS-P-littoralis_Contig69:661451..6619701680791428.3252745-CDS-P-littoralis_Contig69:661451..661970Pylaiella littoralis U1_48CDSP-littoralis_Contig69 661452..661970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.153.1prot_P-littoralis_Contig69.153.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 660740..661970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.153.1

>prot_P-littoralis_Contig69.153.1 ID=prot_P-littoralis_Contig69.153.1|Name=mRNA_P-littoralis_Contig69.153.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=365bp
AEGGHLNVLQWAIGNGCRWDEDTCSSATRGGHLDVLQRARQKGCPWSGKT
CEAAAGGGNLEVLQWAREHGCPWSATTTLSAAERGHLTVLQWARGNGCPW
HKWTCSWAVENGHIHVFYWSRETGCPWDDMACIQAAAKGDLGTLQWARQN
GCPWSKVVYAETAAHGHLDVLQWGGPLNMLRWARQHGCPWSDDTCRSAAE
GGHLAFLQRARQNGCLWDDRTCRAASRKGHLEVLTGLSIGREKCSGAAGG
GHLVLLQWARQNGCPWSSATCLSAALNSHLAVFQWVRQHHCPWKSLVCGL
TVETRNLSVLQWARQNGCPWDERTCSAAAAWGSLDCLQWALENGCPWDAD
TLRRAIGGGVAASEW
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mRNA from alignment at P-littoralis_Contig69:660738..661970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.153.1 ID=mRNA_P-littoralis_Contig69.153.1|Name=mRNA_P-littoralis_Contig69.153.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1233bp|location=Sequence derived from alignment at P-littoralis_Contig69:660738..661970- (Pylaiella littoralis U1_48)
GCCGAGGGAGGGCATTTGAACGTACTTCAGTGGGCAATCGGCAATGGTTG
TCGATGGGACGAAGACACGTGCTCGTCGGCTACCAGGGGAGGGCATCTGG
ATGTTCTGCAGCGGGCTCGGCAGAAGGGTTGCCCGTGGAGCGGGAAAACG
TGCGAGGCGGCTGCCGGAGGTGGAAATCTGGAGGTACTTCAGTGGGCTAG
GGAGCACGGCTGTCCATGGAGTGCCACGACGACTTTGAGTGCTGCGGAAC
GAGGGCATCTGACTGTTCTGCAATGGGCTCGGGGGAACGGCTGTCCCTGG
CATAAGTGGACGTGTTCGTGGGCTGTTGAGAATGGACATATTCATGTTTT
CTACTGGTCAAGAGAGACTGGATGTCCTTGGGATGATATGGCATGCATTC
AAGCGGCAGCCAAGGGAGACCTGGGCACTTTGCAGTGGGCAAGGCAAAAC
GGATGTCCCTGGAGCAAAGTGGTTTATGCTGAGACTGCCGCGCATGGCCA
TCTGGATGTTCTCCAATGGGCGAGAAAAAATGGTTGTGCATGGGGGCAGG
ACGCGTGTTTAGCCGCTGCCAGAGGAGTGCATTTGAACATTCTTCAGTGG
GCGAGAGGAAATGGTTGTCCTTCGAGCAAAGGGACGTCTCTCTGTTGCTG
CCGAGGGAGGGCCTTTGAATATGCTTCGCTGGGCGCGACAGCATGGGTGT
CCCTGGAGCGACGACACGTGCAGATCAGCTGCAGAAGGAGGTCACCTAGC
GTTTCTTCAGCGGGCGCGGCAAAACGGCTGCCTTTGGGACGACAGAACGT
GCCGTGCTGCGTCGCGCAAGGGTCACTTGGAGGTTCTTACAGGGTTGTCC
ATAGGACGAGAAAAGTGCTCGGGGGCGGCAGGCGGAGGGCACCTTGTACT
GCTGCAGTGGGCCCGCCAGAACGGCTGTCCATGGAGTTCTGCGACTTGTC
TGTCAGCTGCGCTTAATAGCCACCTTGCTGTTTTCCAGTGGGTCCGGCAG
CATCATTGCCCTTGGAAGTCTTTGGTTTGCGGTCTGACTGTTGAAACCAG
AAATCTTAGCGTTCTTCAGTGGGCACGGCAGAATGGCTGCCCGTGGGACG
AGCGAACATGTTCTGCTGCTGCTGCTTGGGGATCACTAGACTGCCTGCAG
TGGGCGCTGGAGAACGGCTGTCCTTGGGATGCTGATACACTTCGCAGGGC
CATTGGTGGCGGAGTGGCTGCAAGTGAATGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:660738..661970-

>mRNA_P-littoralis_Contig69.153.1 ID=mRNA_P-littoralis_Contig69.153.1|Name=mRNA_P-littoralis_Contig69.153.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1095bp|location=Sequence derived from alignment at P-littoralis_Contig69:660738..661970- (Pylaiella littoralis U1_48)
GCCGAGGGAGGGCATTTGAACGTACTTCAGTGGGCAATCGGCAATGGTTG
TCGATGGGACGAAGACACGTGCTCGTCGGCTACCAGGGGAGGGCATCTGG
ATGTTCTGCAGCGGGCTCGGCAGAAGGGTTGCCCGTGGAGCGGGAAAACG
TGCGAGGCGGCTGCCGGAGGTGGAAATCTGGAGGTACTTCAGTGGGCTAG
GGAGCACGGCTGTCCATGGAGTGCCACGACGACTTTGAGTGCTGCGGAAC
GAGGGCATCTGACTGTTCTGCAATGGGCTCGGGGGAACGGCTGTCCCTGG
CATAAGTGGACGTGTTCGTGGGCTGTTGAGAATGGACATATTCATGTTTT
CTACTGGTCAAGAGAGACTGGATGTCCTTGGGATGATATGGCATGCATTC
AAGCGGCAGCCAAGGGAGACCTGGGCACTTTGCAGTGGGCAAGGCAAAAC
GGATGTCCCTGGAGCAAAGTGGTTTATGCTGAGACTGCCGCGCATGGCCA
TCTGGATGTTCTCCAATGGGGAGGGCCTTTGAATATGCTTCGCTGGGCGC
GACAGCATGGGTGTCCCTGGAGCGACGACACGTGCAGATCAGCTGCAGAA
GGAGGTCACCTAGCGTTTCTTCAGCGGGCGCGGCAAAACGGCTGCCTTTG
GGACGACAGAACGTGCCGTGCTGCGTCGCGCAAGGGTCACTTGGAGGTTC
TTACAGGGTTGTCCATAGGACGAGAAAAGTGCTCGGGGGCGGCAGGCGGA
GGGCACCTTGTACTGCTGCAGTGGGCCCGCCAGAACGGCTGTCCATGGAG
TTCTGCGACTTGTCTGTCAGCTGCGCTTAATAGCCACCTTGCTGTTTTCC
AGTGGGTCCGGCAGCATCATTGCCCTTGGAAGTCTTTGGTTTGCGGTCTG
ACTGTTGAAACCAGAAATCTTAGCGTTCTTCAGTGGGCACGGCAGAATGG
CTGCCCGTGGGACGAGCGAACATGTTCTGCTGCTGCTGCTTGGGGATCAC
TAGACTGCCTGCAGTGGGCGCTGGAGAACGGCTGTCCTTGGGATGCTGAT
ACACTTCGCAGGGCCATTGGTGGCGGAGTGGCTGCAAGTGAATGG
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