mRNA_P-littoralis_Contig69.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.127.1
Unique NamemRNA_P-littoralis_Contig69.127.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig69.127.1 vs. uniprot
Match: A0A6H5KIC8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.340e-6
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 3 
Query:  672 EVAFRNIWRSLPPHLRQVNFDFEQGLWEPADIGRLGNLL 788
            EVAFR +W+ +PPH+R V+FDF   LWEP DI  LG+++
Sbjct:   93 EVAFRRLWQRVPPHIRDVHFDFSAKLWEPEDIDNLGDIV 131
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BLAST of mRNA_P-littoralis_Contig69.127.1 vs. uniprot
Match: A0A6H5JWI6_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.350e-5
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 3 
Query:  657 IYALTEVAFRNIWRSLPPHLRQVNFDFEQGLWEPADIGRLG 779
            I    +VAFR +W+ +PPH+R V+FDF   LWEP DI +LG
Sbjct:   35 IVCTRKVAFRRLWQRVPPHIRDVHFDFTAKLWEPEDIDKLG 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIC8_9PHAE5.340e-656.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWI6_9PHAE2.350e-553.66RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:533955..536648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size790
Hectar predicted targeting categoryother localisation
Exons4
Cds size495
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.127.1prot_P-littoralis_Contig69.127.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 534115..535631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791428.2023294-UTR-P-littoralis_Contig69:533954..5341141680791428.2023294-UTR-P-littoralis_Contig69:533954..534114Pylaiella littoralis U1_48UTRP-littoralis_Contig69 533955..534114 +
1680791428.261917-UTR-P-littoralis_Contig69:535631..5356501680791428.261917-UTR-P-littoralis_Contig69:535631..535650Pylaiella littoralis U1_48UTRP-littoralis_Contig69 535632..535650 +
1680791428.274702-UTR-P-littoralis_Contig69:536532..5366481680791428.274702-UTR-P-littoralis_Contig69:536532..536648Pylaiella littoralis U1_48UTRP-littoralis_Contig69 536533..536648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791428.2192957-CDS-P-littoralis_Contig69:534114..5342021680791428.2192957-CDS-P-littoralis_Contig69:534114..534202Pylaiella littoralis U1_48CDSP-littoralis_Contig69 534115..534202 +
1680791428.2309918-CDS-P-littoralis_Contig69:534702..5350531680791428.2309918-CDS-P-littoralis_Contig69:534702..535053Pylaiella littoralis U1_48CDSP-littoralis_Contig69 534703..535053 +
1680791428.2415564-CDS-P-littoralis_Contig69:535575..5356311680791428.2415564-CDS-P-littoralis_Contig69:535575..535631Pylaiella littoralis U1_48CDSP-littoralis_Contig69 535576..535631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.127.1

>prot_P-littoralis_Contig69.127.1 ID=prot_P-littoralis_Contig69.127.1|Name=mRNA_P-littoralis_Contig69.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
MPRCCLFSTAGGRGRGHCCDCWWWAGKWVEISGLHKNGARTSGSWGRWGR
ARPVEERWGQALLCPTGIGARTSCQEISWGRARLDQLGSRKAANGTVTSG
LATHIAGAGLGVDRCPSNNDKNVPRASGRQRERTSYPQANESAGAPGEAG
GRAGIWRSSKRRLG*
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mRNA from alignment at P-littoralis_Contig69:533955..536648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.127.1 ID=mRNA_P-littoralis_Contig69.127.1|Name=mRNA_P-littoralis_Contig69.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2694bp|location=Sequence derived from alignment at P-littoralis_Contig69:533955..536648+ (Pylaiella littoralis U1_48)
CGCGTTCGGCCGCTGTGCGTTCATCCCTGTCCTTTCTCGATGCGGCTAAA
GCTCGGTCAGTGGGGGTTGATGAAGTGCTGGGTCACTCTGGTGGTGTCGA
GGGCACGGAACAACCCTTGACAGTTCCGTCCCTCGGAGACAACGAGGAAG
GCGGAGATCTATGCCGCGGTGTTGTCTCTTCAGCACAGCTGGCGGCCGTG
GACGAGGGCACTGCTGTGATTGCTGGTGGTGGGCCGGAAAATGGGTCGGT
AAGTCGGGGGTGTTTGCTTGACACCTTGCAGTCATTGCTTGGTGAGAAGG
ATTTATCACACAAGCGGGAGTTGCTTGGGCACTGCGAAGGGACGCGCGAT
TCGTGCTTCCGATGGTTGAGTTTCGGGATGGGTGTTGGGACTTGCGCGGT
GTCTTTCCGCGTGTGTCTAGCCTTACTCAGTCATATCCATTGCCCTTCTT
TATTCGCTTCAACACGCACGCTGACAAAGCTGCCGCTTGGCCAGCGTACA
GCTCCTGTTGCTTGAACTGCTGTGGTGGTGATGCCCTGACCCTGAATCTT
CAATACAAATCGGCTTTGATGAATCCGACTCTCGGGGCAGACTGCCCGAA
ACAAGTTTTAGAAACAGAGCTGCTTGGTTACCGAGGCTGCGCCAACGGTC
TGTTCATTGGTCGAACCAGGGGTGCGGCGGCAAGGGCAAGGCAAGGACAA
CGTACTGGCCAGTATGATAGCAGAAACTTTGTCCGTTTCTTGTGACAGAA
ATTTCAGGTCTGCACAAGAATGGCGCACGAACGAGCGGTAGTTGGGGCCG
CTGGGGTCGGGCAAGGCCGGTGGAGGAACGTTGGGGTCAGGCGCTCTTGT
GTCCGACCGGAATTGGCGCTCGAACAAGCTGTCAGGAGATCAGCTGGGGT
CGCGCAAGGCTAGATCAGCTGGGGTCGCGCAAGGCTGCGAATGGTACGGT
TACAAGTGGACTTGCGACGCACATCGCAGGAGCTGGTCTGGGGGTGGACA
GGTGTCCATCTAACAACGACAAGAATGTTCCTCGGGCGTCTGGTCGCCAA
CGTGAGAGAACTAGCTACCCTCAAGCCAATGAGAGCGCAGGGGCGCCAGG
TGTGTTCTGTACTACGCCGACGACTGCGGTGGCAGTCGGGGTGGGTCGTT
CGGGCGGTAGTGTTTCGGGGAATGGTCCGTCTCGGGGTACTATGGGTCTT
ATGGGCGTGCAAGCGTCCGGTGCATATCAGATAAATAAAGAGGCTGGGTC
TGATAATCCGTCAGTGACTGTGTCTTAGGAGACGGTGGGCACGTCTCCTC
TGTCTGATCAAACAGGGTGGTATCCCGTCCTTGATGGCGCCCGGGATTTG
GCTAACCGAGGTGATACATGTCAGGAGGTTCGCACTGTACGAAAAGCAAC
AGCCTCGCCGCGTGCATCGTTGAGTACTTTGGCTGCGGTGAAAACCAGAA
AATTGCTCGGGGTCGGATAGAGCAAAGTGCTGTCACTCCAGCTGCCACTG
TATTGACGGGTATTGCTGAGGGAAGTAAGGACCACTTTGAGTGGGTGTGA
ATGAAATGGTTTGGGTGGGCATGTGTCGACTGACGGCCAAAGCGACCCCA
ACCATGCTTCTTGTCCCTCAGGGGAAGCAGGAGGCCGTGCGGGAATTTGG
AGAAGTTCGAAGCGGAGACTCGGATAGAATTTACGCCTTAACCGAGGTGG
GTGGGCAAACAAATTGGTTGGTGATGTGGTTTGAAACCGACGCTTTCACA
CCGTCAAGGTGGAAGGTTTTTGTGGGGTCTCGGGCTACTGTGCCTGAGCA
TTGTTCGTCTTTTTTCGGCAAACGTGTCTTGATAAAATGTTGGCATGTGG
GTCCGCGTCTGAAAACGGCGTTACCGCAAGTACAACAACATGGGGCGGAT
TTCATAGTGAACCGCTCACGACGACTCAATGGGTGAGATTAATCGTGCAC
ATGTTGGCAAGGTGGCAAGAATTGTTCGCGTTATGTGGGGTCACCTGCAG
TCCGTACCGCCGTCTATGCTCACGTCGTGCCGGAAGGGGTAATGTCTCAT
GACGTTTTGTTGGGTCGTGATAGTTGGGAGCCGTTCCCAGTTCGCACGTA
TCCTGATGTCTCAGCTGAAGAAACGGTGGTCACGTTCGCCACAAAAGCCG
GAGGTTCGTTTCTCGTTGACGACAAGTTCCGCGCACGGGTGGATGGGGCG
GTGGGTATGGTTGAGCATGAAGGACCGGATAAGGTCGTGGTCCGTCATGC
GGGTATAAAACGTCGGGCTCACAATACTATGAGCTGGGTTAAGGTCGAGT
TGCGGAAGGATGATGGGTCTGCAGCCGACGCGGGTGTGCGTAAGGTCCGT
TTCAATGAGGGTGGCCTCCTCGTGAACAACTGGTGGAAGCAGGGGTTTCA
GGAATCCCGATGTCTCGGGTAGGTGGCTGTTGTCAAGTGCACCAACGTAT
GCGATTCGGATTATCCGCGTTTGGTCCCGGCTGTCCCAACGATGGTTCAG
GCTGTTACAGAACCTGCCGTTATCAATTCTGACGATCCTCCTTACTCGGG
AATGTCCACGCTGTCACCGTCGCAACAGGTGGCATTTCGAAATATATGGA
GAAGCTTGCCGCCGCATTTGCGCCAGGTGAACTTTGATTTCGAGCAAGGC
TTGTGGGAGCCGGCAGACATCGGTCGGCTGGGGAATCTTCTATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:533955..536648+

>mRNA_P-littoralis_Contig69.127.1 ID=mRNA_P-littoralis_Contig69.127.1|Name=mRNA_P-littoralis_Contig69.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig69:533955..536648+ (Pylaiella littoralis U1_48)
ATGCCGCGGTGTTGTCTCTTCAGCACAGCTGGCGGCCGTGGACGAGGGCA
CTGCTGTGATTGCTGGTGGTGGGCCGGAAAATGGGTCGAAATTTCAGGTC
TGCACAAGAATGGCGCACGAACGAGCGGTAGTTGGGGCCGCTGGGGTCGG
GCAAGGCCGGTGGAGGAACGTTGGGGTCAGGCGCTCTTGTGTCCGACCGG
AATTGGCGCTCGAACAAGCTGTCAGGAGATCAGCTGGGGTCGCGCAAGGC
TAGATCAGCTGGGGTCGCGCAAGGCTGCGAATGGTACGGTTACAAGTGGA
CTTGCGACGCACATCGCAGGAGCTGGTCTGGGGGTGGACAGGTGTCCATC
TAACAACGACAAGAATGTTCCTCGGGCGTCTGGTCGCCAACGTGAGAGAA
CTAGCTACCCTCAAGCCAATGAGAGCGCAGGGGCGCCAGGGGAAGCAGGA
GGCCGTGCGGGAATTTGGAGAAGTTCGAAGCGGAGACTCGGATAG
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