mRNA_P-littoralis_Contig689.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig689.2.1
Unique NamemRNA_P-littoralis_Contig689.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 2.260e-80
Identity = 133/172 (77.33%), Postives = 140/172 (81.40%), Query Frame = 1
Query:    1 PVAKVTAVHTGANAKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSGGGL-------------------------VRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEF 441
            PVA+V+AVHTGANA+RATADTAEGLER+LYLAKGAKVML+KNLYQQVGLVNGIRGEVVELV ADDAPPPKLPLYVVVKF GYSGG                           VRTQLPLR  WAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDL+VEP+ F
Sbjct:   73 PVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSF 244          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 2.640e-73
Identity = 133/172 (77.33%), Postives = 140/172 (81.40%), Query Frame = 1
Query:    1 PVAKVTAVHTGANAKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSGGGL-------------------------VRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEF 441
            PVA+V+AVHTGANA+RATADTAEGLER+LYLAKGAKVML+KNLYQQVGLVNGIRGEVVELV ADDAPPPKLPLYVVVKF GYSGG                           VRTQLPLR  WAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDL+VEP+ F
Sbjct: 1378 PVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSF 1549          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 8.850e-67
Identity = 117/153 (76.47%), Postives = 121/153 (79.08%), Query Frame = 1
Query:   58 DTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSGGGL-------------------------VRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEF 441
            DTAEGLER+LYLAKGAKVML+KNLYQQVGLVNGIRGEVVELV ADDAPPPKLPLYVVVKF GYSGG                           VRTQLPLR  WAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDL+VEP+ F
Sbjct:  266 DTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSF 418          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.250e-54
Identity = 100/135 (74.07%), Postives = 103/135 (76.30%), Query Frame = 1
Query:  112 MLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSGGGL-------------------------VRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEF 441
            ML+KNLYQQVGLVNGIRGEVVELV ADDAPPPKLPLYVVVKF GYSGG                           VRTQLPLR  WAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDL+VEP+ F
Sbjct:    1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSF 135          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 4.390e-52
Identity = 101/147 (68.71%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 PVAKVTAVHTGANAKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSGGGLVRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEF 441
            PVA+V+AVHTGANA+RATADTAEGLER+LYLAKGAKVML+KNLYQQVGL                                  GG  VRTQLPLR  WAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDL+VEP+ F
Sbjct:  301 PVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGL---------------------------------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSF 414          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A2Z6QFX4_9GLOM (ATP-dependent DNA helicase n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QFX4_9GLOM)

HSP 1 Score: 141 bits (355), Expect = 5.060e-36
Identity = 78/176 (44.32%), Postives = 105/176 (59.66%), Query Frame = 1
Query:    1 PVAKVTAVHTGAN-AKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSGGGLV--------------------------RTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEFRQ 447
            PVAK+ A+HTG N AK+A +DTA GLE  + LA+GA+VMLT NL   +GLVNG  G V ++++ +D  PP LP+ V++ F  Y G  +                           R Q+P+R  WAIT+HKSQG TL KA+IDLG KE   GL+FV +SR + L DL+ +P  F +
Sbjct: 1346 PVAKIQAMHTGGNEAKKADSDTAHGLEAYILLARGARVMLTANLQTDIGLVNGSMGTVQDIIFNEDQGPPCLPIAVLISFDNYKGPTITSLKGERVVPIAPIQRTWTGKSGVSCSRLQIPIRLAWAITVHKSQGLTLQKAIIDLGEKEFTAGLSFVAVSRVRALEDLLFKPFNFER 1521          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A6S7LS63_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LS63_PARCT)

HSP 1 Score: 132 bits (332), Expect = 1.570e-35
Identity = 71/173 (41.04%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    1 PVAKVTAVHTGANAKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSG------------------------GGLVRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEFRQ 447
            P+A + A H+ A AK+ ++D   GLE  ++LAKGA+VMLT NL+  VGL NG  G VV+++Y ++  PP LP+ V+V+F  Y G                        G   R QLPLR  WA+T+HKSQG TL KA ID+G  E   G+++V +SR K L   ++EP+ + +
Sbjct:   43 PIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNESRPLCIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYER 215          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A7D9HJE5_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HJE5_PARCT)

HSP 1 Score: 132 bits (332), Expect = 2.970e-35
Identity = 71/173 (41.04%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    1 PVAKVTAVHTGANAKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSG------------------------GGLVRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEFRQ 447
            P+A + A H+ A AK+ ++D   GLE  ++LAKGA+VMLT NL+  VGL NG  G VV+++Y ++  PP LP+ V+V+F  Y G                        G   R QLPLR  WA+T+HKSQG TL KA ID+G  E   G+++V +SR K L   ++EP+ + +
Sbjct:   69 PIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPLCIPIIPITVASQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYER 241          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A6S7JIW3_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JIW3_PARCT)

HSP 1 Score: 139 bits (349), Expect = 3.170e-35
Identity = 74/170 (43.53%), Postives = 101/170 (59.41%), Query Frame = 1
Query:    1 PVAKVTAVHTGANAKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSGGG-----------------------LVRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEF 441
            P+A++ A H+G+NAK  +A    GL+  + + KGAKVMLT NL+  VGL NG  G +V+++YA D  PP LP+ V+VKF  Y G                         L R QLPL   WA+T+HKSQG TL KA +D+G KE   G+T+V LSRA+ L  L++EP+ +
Sbjct:  917 PIAEICARHSGSNAKSVSAQEMFGLQPTILICKGAKVMLTMNLWASVGLCNGASGTIVDIIYAKDHHPPDLPIAVLVKFDEYRGPNFCSIPFCVPIPPVTASVNIDNKTLERQQLPLTLAWALTIHKSQGMTLEKAWVDIGKKECTLGITYVALSRARNLTSLVIEPMTY 1086          
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Match: A0A1X7VQQ4_AMPQE (ATP-dependent DNA helicase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VQQ4_AMPQE)

HSP 1 Score: 130 bits (326), Expect = 5.300e-35
Identity = 76/166 (45.78%), Postives = 98/166 (59.04%), Query Frame = 1
Query:    1 PVAKVTAVHTGANAKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFVGY---------------------SGGGLVRTQLPLRRYWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPI 435
            P+A + AVHTGANA +   D A GLE  + LA+ A+VMLT NL+ +VGLVNG  G V  + Y +  PP  LP+ V+V+F  Y                     SGG   R QLPL+  WA+T+HKSQG TL K VID+G KE   GLTFV  SR ++L D++  P+
Sbjct:    8 PIATIKAVHTGANAAKTPPDDAGGLEPVVMLARTARVMLTSNLWVEVGLVNGAMGTVEAICYKETMPP-HLPVAVMVRFDHYTGPTVHDGTVPITPIRHNWSSSGGQCSRLQLPLKLAWAVTIHKSQGLTLDKVVIDVGKKEFSCGLTFVACSRVRKLKDILFMPL 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig689.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE2.260e-8077.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE2.640e-7377.33ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5JFG8_9PHAE8.850e-6776.47Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE4.250e-5474.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE4.390e-5268.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2Z6QFX4_9GLOM5.060e-3644.32ATP-dependent DNA helicase n=2 Tax=Rhizophagus cla... [more]
A0A6S7LS63_PARCT1.570e-3541.04Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A7D9HJE5_PARCT2.970e-3541.04Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A6S7JIW3_PARCT3.170e-3543.53ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A1X7VQQ4_AMPQE5.300e-3545.78ATP-dependent DNA helicase n=2 Tax=Amphimedon quee... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig689contigP-littoralis_Contig689:18811..19333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15726636
PFAMsHerpes_Helicase,PIF1
Model size447
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.7e-36
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,3A1N8@33154|Opisthokonta,3BR8V@33208|Metazoa
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size447
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791427.0053785-CDS-P-littoralis_Contig689:18810..190711680791427.0053785-CDS-P-littoralis_Contig689:18810..19071Pylaiella littoralis U1_48CDSP-littoralis_Contig689 18811..19071 +
1680791427.0199628-CDS-P-littoralis_Contig689:19147..193331680791427.0199628-CDS-P-littoralis_Contig689:19147..19333Pylaiella littoralis U1_48CDSP-littoralis_Contig689 19148..19333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig689.2.1prot_P-littoralis_Contig689.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig689 18811..19333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig689.2.1

>prot_P-littoralis_Contig689.2.1 ID=prot_P-littoralis_Contig689.2.1|Name=mRNA_P-littoralis_Contig689.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
PVAKVTAVHTGANAKRATADTAEGLERELYLAKGAKVMLTKNLYQQVGLV
NGIRGEVVELVYADDAPPPKLPLYVVVKFVGYSGGGLVRTQLPLRRYWAI
TMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPIEFRQ
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mRNA from alignment at P-littoralis_Contig689:18811..19333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig689.2.1 ID=mRNA_P-littoralis_Contig689.2.1|Name=mRNA_P-littoralis_Contig689.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=523bp|location=Sequence derived from alignment at P-littoralis_Contig689:18811..19333+ (Pylaiella littoralis U1_48)
CCCGTCGCTAAGGTTACCGCCGTCCACACGGGCGCGAACGCCAAGAGGGC AACAGCAGACACCGCGGAGGGCCTGGAGAGGGAGCTCTACTTAGCCAAGG GAGCCAAGGTTATGCTCACCAAGAACCTGTACCAACAAGTTGGGCTGGTA AACGGCATTCGAGGCGAAGTCGTAGAGTTGGTGTATGCAGATGATGCGCC CCCGCCGAAGCTCCCCCTTTACGTCGTGGTCAAGTTCGTAGGGTACTCGG GGGGGGGACTGGTCGTCTCAGGAGAGGTATAGAGGTTGTGTGCCTATTTC TCCCGTAGACACCACTTGGCAGGACGGGGGGACGCAGGTCAGGACGCAGC TGCCACTTCGGCGATACTGGGCGATTACGATGCACAAATCGCAGGGTCAG ACGTTAGCCAAGGCCGTCATCGACTTGGGGCCCAAGGAGGCCTGTACGGG GCTTACTTTCGTCTGTCTCAGTAGGGCTAAGAGACTTGTGGACCTCATCG TAGAGCCAATTGAGTTTCGACAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig689:18811..19333+

>mRNA_P-littoralis_Contig689.2.1 ID=mRNA_P-littoralis_Contig689.2.1|Name=mRNA_P-littoralis_Contig689.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig689:18811..19333+ (Pylaiella littoralis U1_48)
CCCGTCGCTAAGGTTACCGCCGTCCACACGGGCGCGAACGCCAAGAGGGC
AACAGCAGACACCGCGGAGGGCCTGGAGAGGGAGCTCTACTTAGCCAAGG
GAGCCAAGGTTATGCTCACCAAGAACCTGTACCAACAAGTTGGGCTGGTA
AACGGCATTCGAGGCGAAGTCGTAGAGTTGGTGTATGCAGATGATGCGCC
CCCGCCGAAGCTCCCCCTTTACGTCGTGGTCAAGTTCGTAGGGTACTCGG
GGGGGGGACTGGTCAGGACGCAGCTGCCACTTCGGCGATACTGGGCGATT
ACGATGCACAAATCGCAGGGTCAGACGTTAGCCAAGGCCGTCATCGACTT
GGGGCCCAAGGAGGCCTGTACGGGGCTTACTTTCGTCTGTCTCAGTAGGG
CTAAGAGACTTGTGGACCTCATCGTAGAGCCAATTGAGTTTCGACAG
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