mRNA_P-littoralis_Contig684.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig684.15.1
Unique NamemRNA_P-littoralis_Contig684.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig684.15.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.940e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   85 GAGGIFDCGANAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 240
            G GGI+DCG+NAVY+QP+   P     G  + CGRC RHGH+A  CAAP+RFEG
Sbjct:  477 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCERHGHHAIDCAAPRRFEG 530
[Close]
BLAST of mRNA_P-littoralis_Contig684.15.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.940e-12
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   85 GAGGIFDCGANAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 240
            G GGI+DCG+NAVY+QP+   P     G  + CGRCGR+ H+A  CAAP+RFEG
Sbjct:  363 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRNDHHAIDCAAPRRFEG 416
[Close]
BLAST of mRNA_P-littoralis_Contig684.15.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.930e-12
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   85 GAGGIFDCGANAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 240
            G GGI+DCG+NAVY+QP+   P        + C RCGRHGH+A  CAAP+RFEG
Sbjct:  233 GVGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286
[Close]
BLAST of mRNA_P-littoralis_Contig684.15.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.290e-7
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   85 GAGGIFDCGANAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 240
            G GGI+DCG++AVY+QP+   P     G  + CGR      +A  CAAP+RFEG
Sbjct:  435 GVGGIYDCGSDAVYHQPESLPPPDAPMGTVHRCGRXXXXXXHAIDCAAPRRFEG 488
[Close]
BLAST of mRNA_P-littoralis_Contig684.15.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.550e-6
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   85 GAGGIFDCGANAVYYQPDL--PKVYTAGMAYACGRCGRHG 198
            G GGI+DCG+NAVY+QP+   P     G  + CGRCGRHG
Sbjct:  435 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRHG 474
[Close]
BLAST of mRNA_P-littoralis_Contig684.15.1 vs. uniprot
Match: A0A6H5JBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 7.750e-6
Identity = 26/54 (48.15%), Postives = 31/54 (57.41%), Query Frame = 1 
Query:   85 GAGGIFDCGANAVYYQPDLPKVYTA--GMAYACGRCGRHGHNATYCAAPKRFEG 240
            G GGI+DCG NAVY+QP+ P    A  G  + C         A  CAAP+RFEG
Sbjct:  121 GVGGIYDCGCNAVYHQPESPPPPGAPMGTVHRCXXXXXXXXXAIDCAAPRRFEG 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig684.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KYB5_9PHAE7.940e-1359.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS7_9PHAE4.940e-1257.41CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JV09_9PHAE6.930e-1257.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD9_9PHAE9.290e-748.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LA89_9PHAE1.550e-657.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBM3_9PHAE7.750e-648.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig684contigP-littoralis_Contig684:151229..151608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size380
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.5810208-CDS-P-littoralis_Contig684:151230..1516081680791421.5810208-CDS-P-littoralis_Contig684:151230..151608Pylaiella littoralis U1_48CDSP-littoralis_Contig684 151231..151608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig684.15.1prot_P-littoralis_Contig684.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig684 151231..151608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig684.15.1

>prot_P-littoralis_Contig684.15.1 ID=prot_P-littoralis_Contig684.15.1|Name=mRNA_P-littoralis_Contig684.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
QRQRCQQQQQQPTPRACSQQSPQVKSQLGAGGIFDCGANAVYYQPDLPKV
YTAGMAYACGRCGRHGHNATYCAAPKRFEGHCWTCGEYGHTSRFCAVKRG
HGVLLSRRVTAVHGASNTDDDGREYV
back to top

mRNA from alignment at P-littoralis_Contig684:151229..151608-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig684.15.1 ID=mRNA_P-littoralis_Contig684.15.1|Name=mRNA_P-littoralis_Contig684.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=380bp|location=Sequence derived from alignment at P-littoralis_Contig684:151229..151608- (Pylaiella littoralis U1_48)
CAGCGGCAGCGGTGTCAGCAGCAGCAGCAGCAGCCCACACCCCGCGCCTG
CTCACAGCAATCCCCCCAGGTGAAGTCGCAGCTTGGGGCCGGGGGAATTT
TTGATTGCGGGGCGAATGCGGTGTACTACCAGCCGGATTTGCCGAAGGTG
TACACAGCGGGCATGGCATATGCGTGTGGGCGGTGCGGCAGGCACGGGCA
TAACGCCACATATTGCGCTGCACCGAAACGGTTCGAGGGGCATTGCTGGA
CGTGCGGTGAGTACGGCCACACGTCTCGCTTTTGTGCCGTCAAGCGAGGA
CATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGTGCACGGTGCGAGTAA
CACTGACGACGACGGGCGAGAGTACGTTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig684:151229..151608-

>mRNA_P-littoralis_Contig684.15.1 ID=mRNA_P-littoralis_Contig684.15.1|Name=mRNA_P-littoralis_Contig684.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig684:151229..151608- (Pylaiella littoralis U1_48)
CAGCGGCAGCGGTGTCAGCAGCAGCAGCAGCAGCCCACACCCCGCGCCTG
CTCACAGCAATCCCCCCAGGTGAAGTCGCAGCTTGGGGCCGGGGGAATTT
TTGATTGCGGGGCGAATGCGGTGTACTACCAGCCGGATTTGCCGAAGGTG
TACACAGCGGGCATGGCATATGCGTGTGGGCGGTGCGGCAGGCACGGGCA
TAACGCCACATATTGCGCTGCACCGAAACGGTTCGAGGGGCATTGCTGGA
CGTGCGGTGAGTACGGCCACACGTCTCGCTTTTGTGCCGTCAAGCGAGGA
CATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGTGCACGGTGCGAGTAA
CACTGACGACGACGGGCGAGAGTACGTT
back to top