mRNA_P-littoralis_Contig680.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.11.1
Unique NamemRNA_P-littoralis_Contig680.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig680.11.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.880e-37
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 1 
Query:   25 NATIRVDHVSKRASLVDVAKMVLDCGEDHAQAALNKLLGPTADADEDCPRLQINNRGGFTQVANVDFLIEIIWLLPGAIPDDVRREMCHAVCRLCEEDVSLVTDTEARHIVMREASLRAHAQGGKKD---NIPAGFELL 432
            +A IRVD  S + S+ DVAK+VL C ++ A+ A+ KLLG T+D D D  R+QINNRG  T VA V+ L+EI+WLLPG I DDVRR++ H VC+    D  LV ++E RHI MREASL A+A     D   +IP G+  L
Sbjct:    2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETRHIAMREASLHANASKVATDQSRDIPPGYSFL 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2U9_9PHAE3.880e-3751.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:21019..21693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP49
Model size612
Max annot lvl2880.D8LP49|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.89e-30
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.0790558-CDS-P-littoralis_Contig680:21018..211951680791416.0790558-CDS-P-littoralis_Contig680:21018..21195Pylaiella littoralis U1_48CDSP-littoralis_Contig680 21019..21195 -
1680791416.0944886-CDS-P-littoralis_Contig680:21258..216931680791416.0944886-CDS-P-littoralis_Contig680:21258..21693Pylaiella littoralis U1_48CDSP-littoralis_Contig680 21259..21693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.11.1prot_P-littoralis_Contig680.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 21019..21693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.11.1

>prot_P-littoralis_Contig680.11.1 ID=prot_P-littoralis_Contig680.11.1|Name=mRNA_P-littoralis_Contig680.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
MATATSLDNATIRVDHVSKRASLVDVAKMVLDCGEDHAQAALNKLLGPTA
DADEDCPRLQINNRGGFTQVANVDFLIEIIWLLPGAIPDDVRREMCHAVC
RLCEEDVSLVTDTEARHIVMREASLRAHAQGGKKDNIPAGFELLGDLRRK
ALELEERKISLKRKRCDIVIHMYRSLEELDITLDTRAQVHMLDTLAQNHK
TRR*
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mRNA from alignment at P-littoralis_Contig680:21019..21693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.11.1 ID=mRNA_P-littoralis_Contig680.11.1|Name=mRNA_P-littoralis_Contig680.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=675bp|location=Sequence derived from alignment at P-littoralis_Contig680:21019..21693- (Pylaiella littoralis U1_48)
ATGGCCACCGCAACGAGCCTCGACAACGCTACCATTCGCGTCGACCATGT
CTCCAAAAGGGCATCGCTGGTAGATGTTGCAAAGATGGTGTTGGATTGTG
GCGAAGACCACGCCCAAGCTGCGCTGAACAAGCTTCTCGGACCAACCGCT
GACGCCGACGAAGACTGTCCGAGACTTCAAATCAACAACAGGGGAGGGTT
TACGCAAGTCGCGAATGTTGATTTTCTGATCGAGATCATCTGGTTGCTAC
CGGGTGCAATCCCGGACGACGTTCGCCGGGAGATGTGCCACGCGGTGTGC
CGTTTGTGCGAAGAGGATGTCAGCCTGGTGACCGATACTGAGGCGCGTCA
TATCGTCATGCGAGAGGCGAGCCTACGCGCTCACGCCCAGGGGGGCAAGA
AGGACAACATACCGGCCGGCTTTGAGCTTTTAGGGGTCCAAGATCAATAA
GAGCTCGCAAAGGAAATGGTGCAACAGTTCTTAAAGGGCCGGGACCAGGA
CCTCCGGCGGAAGGCCCTCGAACTTGAAGAACGGAAGATCTCGCTAAAGC
GCAAACGCTGTGATATTGTTATCCACATGTACCGATCCTTGGAGGAGCTT
GATATCACGCTCGATACGCGCGCTCAAGTTCACATGTTAGACACATTGGC
CCAAAATCACAAAACCAGACGTTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig680:21019..21693-

>mRNA_P-littoralis_Contig680.11.1 ID=mRNA_P-littoralis_Contig680.11.1|Name=mRNA_P-littoralis_Contig680.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig680:21019..21693- (Pylaiella littoralis U1_48)
ATGGCCACCGCAACGAGCCTCGACAACGCTACCATTCGCGTCGACCATGT
CTCCAAAAGGGCATCGCTGGTAGATGTTGCAAAGATGGTGTTGGATTGTG
GCGAAGACCACGCCCAAGCTGCGCTGAACAAGCTTCTCGGACCAACCGCT
GACGCCGACGAAGACTGTCCGAGACTTCAAATCAACAACAGGGGAGGGTT
TACGCAAGTCGCGAATGTTGATTTTCTGATCGAGATCATCTGGTTGCTAC
CGGGTGCAATCCCGGACGACGTTCGCCGGGAGATGTGCCACGCGGTGTGC
CGTTTGTGCGAAGAGGATGTCAGCCTGGTGACCGATACTGAGGCGCGTCA
TATCGTCATGCGAGAGGCGAGCCTACGCGCTCACGCCCAGGGGGGCAAGA
AGGACAACATACCGGCCGGCTTTGAGCTTTTAGGGGACCTCCGGCGGAAG
GCCCTCGAACTTGAAGAACGGAAGATCTCGCTAAAGCGCAAACGCTGTGA
TATTGTTATCCACATGTACCGATCCTTGGAGGAGCTTGATATCACGCTCG
ATACGCGCGCTCAAGTTCACATGTTAGACACATTGGCCCAAAATCACAAA
ACCAGACGTTAG
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