mRNA_P-littoralis_Contig68.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig68.22.1
Unique NamemRNA_P-littoralis_Contig68.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig68.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig68contigP-littoralis_Contig68:85610..90445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFX5
Model size2097
Max annot lvl2880.D8LFX5|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.77e-06
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1173
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791410.4523342-UTR-P-littoralis_Contig68:85609..858151680791410.4523342-UTR-P-littoralis_Contig68:85609..85815Pylaiella littoralis U1_48UTRP-littoralis_Contig68 85610..85815 +
1680791410.478213-UTR-P-littoralis_Contig68:86988..875481680791410.478213-UTR-P-littoralis_Contig68:86988..87548Pylaiella littoralis U1_48UTRP-littoralis_Contig68 86989..87548 +
1680791410.4898381-UTR-P-littoralis_Contig68:90287..904451680791410.4898381-UTR-P-littoralis_Contig68:90287..90445Pylaiella littoralis U1_48UTRP-littoralis_Contig68 90288..90445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791410.4631562-CDS-P-littoralis_Contig68:85815..869881680791410.4631562-CDS-P-littoralis_Contig68:85815..86988Pylaiella littoralis U1_48CDSP-littoralis_Contig68 85816..86988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig68.22.1prot_P-littoralis_Contig68.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig68 85816..86988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig68.22.1

>prot_P-littoralis_Contig68.22.1 ID=prot_P-littoralis_Contig68.22.1|Name=mRNA_P-littoralis_Contig68.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=391bp
MTPICRGHRCSKRPNFGISGTRTAQFCARHAEKGMINVCIKRCGHQGCTR
QAMFGLADTETSKRKAAQFCSSHAPEGTVNLVSRRCGHEGCTKMPSFGAL
GTKKPQFCSPHALEGMVNIVSRRCEHQGCGKVPAFGVDGTKKPQFCLLHA
PEGMVNIITKRCEYPSCTKFPVYGVGGTKNAQFCSQHAPDGMVNVANRRE
RRCRYPHCPKQPAYGVRGTTTAKFCSPHATPGMVDVRSRTCHSQGCNKQP
SHGIDGTRRPLFCAQHAPEGMVNVKTKPCDHEGCRKKPSFGVMGSKRACF
CSEHAPEGMINIRLKLCGHAGCTKQASHAADGTKSAQFCFQHAPVGAVAR
RRKRCSHQDCTKMPSYGEAGTKMALFCPQHVPDGMVNVLI*
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mRNA from alignment at P-littoralis_Contig68:85610..90445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig68.22.1 ID=mRNA_P-littoralis_Contig68.22.1|Name=mRNA_P-littoralis_Contig68.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4836bp|location=Sequence derived from alignment at P-littoralis_Contig68:85610..90445+ (Pylaiella littoralis U1_48)
CGCTACCTCTGTGTAGAGCTAGCCTGCCTGCCCTGCCTCCCCATCACGCA
TGGCCGAGTAAGAATTATCAACCTTCTTTTTTGCCGTATTCACGGTCGTG
TAGTGTATCGACACCGATCCATCCTCTCAAAGGAGTAAGGATTTTCATCA
GTGCGACGACATTGTCGGGTGGAGGACATAACGGCAGAGGCAGGAGGCCA
GCCAAGATGACGCCGATTTGTCGTGGTCACCGCTGTTCGAAGCGACCGAA
TTTCGGCATTAGTGGTACCAGAACTGCCCAGTTCTGCGCCCGACATGCTG
AGAAAGGGATGATCAATGTTTGCATCAAGAGATGTGGCCACCAAGGTTGC
ACCAGGCAGGCGATGTTTGGCCTTGCCGATACTGAAACATCTAAAAGAAA
AGCGGCCCAATTCTGCTCTAGTCACGCCCCTGAGGGTACGGTGAACCTCG
TCAGCAGGAGGTGCGGGCACGAAGGCTGCACGAAGATGCCATCATTTGGG
GCGCTCGGTACCAAAAAGCCCCAGTTCTGCTCTCCACACGCCCTTGAGGG
TATGGTGAACATCGTCAGCAGGAGGTGTGAGCACCAAGGGTGCGGCAAGG
TGCCGGCATTTGGGGTCGACGGCACCAAAAAGCCCCAGTTCTGCCTTCTA
CACGCCCCAGAGGGCATGGTCAATATCATCACCAAGAGGTGTGAGTACCC
AAGCTGCACCAAGTTTCCGGTGTATGGAGTCGGCGGCACCAAGAATGCCC
AGTTTTGCTCTCAACACGCCCCGGATGGGATGGTCAACGTCGCCAACAGG
AGGGAGAGGAGGTGCCGCTACCCTCACTGCCCCAAACAGCCGGCTTACGG
CGTCCGCGGAACGACTACGGCCAAGTTCTGCTCCCCACACGCTACGCCAG
GAATGGTCGATGTCAGGAGCAGAACATGCCACAGCCAAGGCTGCAACAAG
CAGCCGTCGCATGGAATAGATGGCACCAGAAGACCCCTGTTCTGTGCTCA
GCACGCTCCGGAGGGGATGGTCAACGTCAAAACCAAGCCGTGCGATCACG
AAGGCTGCAGAAAGAAGCCCTCGTTCGGGGTGATGGGTTCCAAGCGTGCG
TGTTTCTGCTCTGAGCATGCTCCCGAGGGGATGATCAACATCCGACTCAA
GTTGTGCGGGCACGCAGGCTGTACCAAGCAGGCCTCGCACGCAGCCGACG
GCACTAAATCAGCCCAGTTCTGCTTTCAGCACGCCCCTGTGGGAGCCGTC
GCCCGCCGAAGGAAGAGGTGCAGCCACCAAGACTGCACCAAGATGCCGTC
ATACGGCGAGGCCGGCACCAAGATGGCCCTGTTCTGCCCTCAGCACGTCC
CGGACGGAATGGTCAACGTCCTTATCTAGAGCTGCTGCGGGGTATCAAAG
GCTGAGCAAGCTGCGTTTGTGTACGGCGCGCGAGCTGGGTCAAGACGCCC
TGTGCCCGGCTCTGATCTCAGCACCCGCCTCTGAGAGGAGGTGGTCAGTC
GGCGCCTGAACGGGGAGGTGCGACCGCCGAGGCCGCACCAGACTCGCTGT
CGCGCGGTGAAAGATAGGAGCAGGTCTAGTGCAGCAGGGTCGGGACTGAG
CACTCTGAGGAAGATACATGTATATTTGCATGCCCACACGCCCTACGTAT
CGTAGCGCGTCGGCTTTTTAGGGTGGGCATGGGTGTGGTGGTACACAGGG
GAGGCGGCGGGATCAAGCGGGAAGTGTGCGCCGGGTCTATCCCGGCGCTG
AATATCGACGAAGGGAGTGGCTCCGATCGGGAATAAGAACGGGCATACAA
CCGTGTTTGCCGAGGACATGGCTGCGGTAGATGGATGCCTCGTGGGCTAA
CGAATCAAAATTGAGGAGGCTGGACGGCAAAACTTTGGTTTGGCACCGGG
CTCAACCGACTGGAGCCACAGGATTGCAATGACATGCAGGTGAGGGTCCG
GGTATAGTTTTTTCATGCCCAGGTGGGCTGTTGTGGTGCTGCGACGGGAT
CAACGTAGTGTGGTCCTGTTCGTGTTACGTTCGTCTTTCGTACCGGCCAC
AGCTTTCCGGTTCGGCAGCAAACGGTCTCAGCGTTGATTCCGAGCCTCGT
ACACCTTTGTTGACTTGCCAGAAGGTTTCGCATTTTTCCAAAAATTTAAG
TTGTACGGTATACGCTGGCATCGGAGGTCCCTTTTTTCGTAAAACGCGGG
CAAATATGTGCGGTGCCGAGTTCGCGTACCTTGCACAGTAACGTTTGGAG
CCCAAAGGAGGCACTACCGCACGATCACAACTAACATACATACGATGACA
AGATGTTGGGGGATCAAGCCCTGCTCCTTCTAATCGCTGTTTGGACGAAG
ATATCTCGCTCCGCCAGTCTTCGAACATCGGTCTGTCTATCATCCTGGAG
GTCGTCGAGTTACCACGTACACTATCTACCACCTCTCCTCGAGCTGTCGA
TGGCTCCAAAACCATTCGCCTACCGCATGCGTTTTGTAGGGAAGCAGAGA
GTGCCGGGGGGGTGGTCTCTGCTGCTGCCCTAAGCGCACAGAAGTCTGTT
GTTTCCTCTTTGGCCATCACACGCCTACACGCCTACGCAACATCGAACAA
TATCTGCTCGTGCGGCACGCTTGGTCATCGCCCGCCACGTAACAGCGATG
TTAGTGCCAACACAGCAGTAAATCTAGCCTTGCCCGCCTTTTTCAGTTGC
CCCACCACGTTCGGTGTTCCTCTTGTCCTTGGGAATTCGGTGGCAAAGAA
GTGGCGAATCTGACAAAACAAGCAGCCTTTTTTTTTTTGGCATTCGCGTG
CGTTCAGAGGCGAAGATGGTGAATACGGGATTTTTTTCACGGGGCTGCGT
TAATGCTGGCATGCGTGATGTGCGCGATGGTGCTGTAGTACTGCTGTGTT
CCATGATGCGTGCTTCGTCCCAAAGCTGGTCGTGGCAAGCTCGGTTTGGG
GTCGCGGATATCTCAAGGAGAGGACACCACATCATTCAAATAAAGTTGGC
GAAATTTCAAAATTTTCAATTTTCAATTTTGCTTCGTTTTTTTGTGGACC
CCGTCTGAAAGAAAGCAACACCCAGAGCTTACCACGCCCTCCATGCCCTC
TGCCTCCAGAAGCGAGAACCGCACTTCCGGCCCACCAGCCCTTTTTGCCC
ACGCACTACCACCAAATACATACTCGTATATTGTGACCATTTTTTGCTCG
GTAATAGCTGCCGTACTTTCACCCCGCTGCAAGGTGGCACCGACTGCTGT
CTTCTGACATTTCACAACGCATACCTTTTGATACCGACGTACTCGTCATG
GAGACGCCACCGAACCCTGTGGCATGTTGAACACTGATTGCTGGTGATTG
TTCCCTTATTGTAACTTGTTCTTACATAATCGGAAGTAAATGCAAGCCAC
GTATCACAGAGTACACATATGTACGCTCTTCATCGGTCACAAGCCTTGTT
AATTGAAGAATAATTGCGGCACTTCCGTTGGCGCCGTCGTGGATTTCCTC
GAAGCCAAATGATGTCTCTTGCGATAGAGTGTTTGCGCAAAAGGATTCAT
TATCTCAAATATTCTTTCTTGGAAAAAAAAATAATAAGCGCGGTGAATAA
GAATTCCTCTTTAATATAATTTGAAAATGAGTTTGCGCAAAAGGAGTTCC
CTTTTGACAGAACACCCACAATCTCGTATGCTAGTGCAGAGCAACAATCA
GACACACACGCCTAGACACACGGCTGATGATGTGCTGCTGCTGTAGGATA
GCCAAGACAACGAGTCTTTGGTTCAAGTAATGGGAAGGGTGCCGGGTCAA
GCGAAGTGAATGCAAACTCAGGGGTCACGGGCAGTAGGGATGGGGCAAGT
TCGGCAGAGAGGCTGTAGTTGTGGAAGAAGGCATCATTGGTGTGTGTCAA
CTATTCTGCTGTACTTTGACTGAGTACAGAGCAGCTGACTGCTGTTTGAT
ACGTTCTATTTTCAAGTGCAAAAAAAAAAGGTCGTTTGCATTTTCAGCGT
GCCAGGTGTAAAGCTCGAGCGATACTTCTCTCCACCGGTTGAATGAACCC
ACCTCCAACCCAACCTCCTGCGGACGGAGAGCAGTATACAGAGGAGACAG
CAAAGAAGTTTTCGCCTTGATACGTGGTGTAGAGAGCGAGAGCGTGACTG
CTGTGACTGCCGGTGTTCTGATGTCTGTGTCCCGCGACAGCTGTATGCCT
CTGCTGCGGACGCACGCCAGCCCACACTCGCTACTTTCAAAGAGTCGCTC
CTCAAATGCTATGTTTTGCACGGCTGGCACGCTTCCACCACATGAACCAG
CGGCGAAGGTGTTGGCACAGTGATTGCAGGGTTGTCGGGAACCCTTTTTG
AGCTCGCTGCCTTCAGAAATCACGGCGCAGTGATCGGTGTTATCAACTGA
AACGTAGTGGTGTATCGTCATCTTCTCTCCTAGAACACTGTTGCGGAGAG
GCCGGGGTGATTCGGCCAATCACGTGATGTGCCGACATGGGCTCGCCTGG
CAGATCAAATATTCTTTCCAAATATCCCTTCATCCCGGGATTTTCCGGAA
TTTTGAGAAAATAAATCCTTTCTGTTGCAGTCACGGAGCCTCTCGGGGAA
ACCTCGCGGGAACCAAGAAAGGATATTTGAAATAATAAATCCCTTTGCGC
AAACACTCTAATGCGCTCCCTTTGTCAGGTCGACCAAACCGCGAGCGGAA
ACACAGCAGCGTGAGGCAGAGAGGAGAGCGGGCCATCTGTTTTCGCCCCC
GTGACGTGGGTGAAGTCGAACGGCGCTGCTGAACCGGCGCGTTGGTGAAC
AGTGCTTACGCGGAGGCTCGCGTTTTTCATTTGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig68:85610..90445+

>mRNA_P-littoralis_Contig68.22.1 ID=mRNA_P-littoralis_Contig68.22.1|Name=mRNA_P-littoralis_Contig68.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1173bp|location=Sequence derived from alignment at P-littoralis_Contig68:85610..90445+ (Pylaiella littoralis U1_48)
ATGACGCCGATTTGTCGTGGTCACCGCTGTTCGAAGCGACCGAATTTCGG
CATTAGTGGTACCAGAACTGCCCAGTTCTGCGCCCGACATGCTGAGAAAG
GGATGATCAATGTTTGCATCAAGAGATGTGGCCACCAAGGTTGCACCAGG
CAGGCGATGTTTGGCCTTGCCGATACTGAAACATCTAAAAGAAAAGCGGC
CCAATTCTGCTCTAGTCACGCCCCTGAGGGTACGGTGAACCTCGTCAGCA
GGAGGTGCGGGCACGAAGGCTGCACGAAGATGCCATCATTTGGGGCGCTC
GGTACCAAAAAGCCCCAGTTCTGCTCTCCACACGCCCTTGAGGGTATGGT
GAACATCGTCAGCAGGAGGTGTGAGCACCAAGGGTGCGGCAAGGTGCCGG
CATTTGGGGTCGACGGCACCAAAAAGCCCCAGTTCTGCCTTCTACACGCC
CCAGAGGGCATGGTCAATATCATCACCAAGAGGTGTGAGTACCCAAGCTG
CACCAAGTTTCCGGTGTATGGAGTCGGCGGCACCAAGAATGCCCAGTTTT
GCTCTCAACACGCCCCGGATGGGATGGTCAACGTCGCCAACAGGAGGGAG
AGGAGGTGCCGCTACCCTCACTGCCCCAAACAGCCGGCTTACGGCGTCCG
CGGAACGACTACGGCCAAGTTCTGCTCCCCACACGCTACGCCAGGAATGG
TCGATGTCAGGAGCAGAACATGCCACAGCCAAGGCTGCAACAAGCAGCCG
TCGCATGGAATAGATGGCACCAGAAGACCCCTGTTCTGTGCTCAGCACGC
TCCGGAGGGGATGGTCAACGTCAAAACCAAGCCGTGCGATCACGAAGGCT
GCAGAAAGAAGCCCTCGTTCGGGGTGATGGGTTCCAAGCGTGCGTGTTTC
TGCTCTGAGCATGCTCCCGAGGGGATGATCAACATCCGACTCAAGTTGTG
CGGGCACGCAGGCTGTACCAAGCAGGCCTCGCACGCAGCCGACGGCACTA
AATCAGCCCAGTTCTGCTTTCAGCACGCCCCTGTGGGAGCCGTCGCCCGC
CGAAGGAAGAGGTGCAGCCACCAAGACTGCACCAAGATGCCGTCATACGG
CGAGGCCGGCACCAAGATGGCCCTGTTCTGCCCTCAGCACGTCCCGGACG
GAATGGTCAACGTCCTTATCTAG
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