mRNA_P-littoralis_Contig678.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.8.1
Unique NamemRNA_P-littoralis_Contig678.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:8970..9406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size438
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.3652134-CDS-P-littoralis_Contig678:8969..94041680791408.3652134-CDS-P-littoralis_Contig678:8969..9404Pylaiella littoralis U1_48CDSP-littoralis_Contig678 8970..9404 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.3774283-UTR-P-littoralis_Contig678:9404..94061680791408.3774283-UTR-P-littoralis_Contig678:9404..9406Pylaiella littoralis U1_48UTRP-littoralis_Contig678 9405..9406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.8.1prot_P-littoralis_Contig678.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 8970..9404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.8.1

>prot_P-littoralis_Contig678.8.1 ID=prot_P-littoralis_Contig678.8.1|Name=mRNA_P-littoralis_Contig678.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MDDQRSRPVMIFPVVRNMPPVASMIANMQEKIDSLKASLHAVNGRLSALE
AETAAHDEEDSEKETVRKAAKIIKAVAHPCAKANNTWVFEQAGGKNELDC
PTPAVEYAKNVPPLLVTFVDVLMNEQGPGCDEDGGSESDDCDDED
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mRNA from alignment at P-littoralis_Contig678:8970..9406-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.8.1 ID=mRNA_P-littoralis_Contig678.8.1|Name=mRNA_P-littoralis_Contig678.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=437bp|location=Sequence derived from alignment at P-littoralis_Contig678:8970..9406- (Pylaiella littoralis U1_48)
CGATGGATGACCAAAGATCCCGTCCTGTCATGATTTTTCCTGTCGTCAGG
AACATGCCTCCGGTTGCATCAATGATAGCCAACATGCAGGAGAAGATTGA
TTCTTTGAAAGCTAGTCTTCACGCTGTAAACGGGAGGCTCTCGGCGCTGG
AGGCGGAGACCGCGGCACACGACGAGGAAGACTCAGAAAAAGAAACCGTC
CGAAAAGCCGCCAAGATCATCAAAGCAGTTGCGCATCCGTGCGCCAAGGC
TAACAATACGTGGGTGTTCGAACAGGCAGGTGGTAAGAACGAGTTGGACT
GTCCAACCCCCGCCGTCGAGTACGCCAAAAACGTTCCGCCTCTTCTGGTC
ACCTTCGTAGACGTGTTGATGAACGAGCAGGGGCCCGGATGTGATGAGGA
TGGCGGTTCGGAGTCCGATGATTGTGACGACGAAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:8970..9406-

>mRNA_P-littoralis_Contig678.8.1 ID=mRNA_P-littoralis_Contig678.8.1|Name=mRNA_P-littoralis_Contig678.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig678:8970..9406- (Pylaiella littoralis U1_48)
ATGGATGACCAAAGATCCCGTCCTGTCATGATTTTTCCTGTCGTCAGGAA
CATGCCTCCGGTTGCATCAATGATAGCCAACATGCAGGAGAAGATTGATT
CTTTGAAAGCTAGTCTTCACGCTGTAAACGGGAGGCTCTCGGCGCTGGAG
GCGGAGACCGCGGCACACGACGAGGAAGACTCAGAAAAAGAAACCGTCCG
AAAAGCCGCCAAGATCATCAAAGCAGTTGCGCATCCGTGCGCCAAGGCTA
ACAATACGTGGGTGTTCGAACAGGCAGGTGGTAAGAACGAGTTGGACTGT
CCAACCCCCGCCGTCGAGTACGCCAAAAACGTTCCGCCTCTTCTGGTCAC
CTTCGTAGACGTGTTGATGAACGAGCAGGGGCCCGGATGTGATGAGGATG
GCGGTTCGGAGTCCGATGATTGTGACGACGAAGAC
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