mRNA_P-littoralis_Contig678.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.16.1
Unique NamemRNA_P-littoralis_Contig678.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:21929..22762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size656
Hectar predicted targeting categoryother localisation
Exons2
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.240749-UTR-P-littoralis_Contig678:21928..222121680791408.240749-UTR-P-littoralis_Contig678:21928..22212Pylaiella littoralis U1_48UTRP-littoralis_Contig678 21929..22212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.2527454-CDS-P-littoralis_Contig678:22212..224631680791408.2527454-CDS-P-littoralis_Contig678:22212..22463Pylaiella littoralis U1_48CDSP-littoralis_Contig678 22213..22463 +
1680791408.2640173-CDS-P-littoralis_Contig678:22641..227621680791408.2640173-CDS-P-littoralis_Contig678:22641..22762Pylaiella littoralis U1_48CDSP-littoralis_Contig678 22642..22762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.16.1prot_P-littoralis_Contig678.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 22213..22762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.16.1

>prot_P-littoralis_Contig678.16.1 ID=prot_P-littoralis_Contig678.16.1|Name=mRNA_P-littoralis_Contig678.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MTHTGGGCRASESFGQRDDFAHSLGDKARVCVECKPALEQQGRASNQKER
AADGVVTSRSRRRKSARVLKPISPAASDTLEERRSSTVVLHKADPFERDS
ELLARGSLDLQQAAKLVVLNLGAD
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mRNA from alignment at P-littoralis_Contig678:21929..22762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.16.1 ID=mRNA_P-littoralis_Contig678.16.1|Name=mRNA_P-littoralis_Contig678.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig678:21929..22762+ (Pylaiella littoralis U1_48)
TGACAGCGCGCATGGCGCCGGTGGTGCTGGTTCTGGAGTATCAGATGAGC
TTTGTGACGCATGCACGCCACCAGCCACTTCAAGGTACGGGGCCGTACGT
ACCCCTGATTTTCTTTCGGTTCATTTGAGCGGTTGCGGTTTGCCGTGGCC
GAATTTTCGGTTCGTTTGGGCGACTCCTAGGTAGTGATGAACAAGGTATG
CAAACCAGCCATTTAAAACAAAGCACACGTCTCCGTTGTTTATTTTGATA
CCTGTCAAGCAGCTACCGTTGCGCAGTTTGCAGCATGACGCACACAGGAG
GCGGTTGCCGTGCATCCGAGAGCTTTGGCCAACGCGACGACTTTGCCCAC
AGCCTTGGCGATAAAGCGAGAGTCTGTGTGGAATGTAAGCCCGCCCTGGA
GCAGCAGGGACGAGCTTCCAACCAAAAGGAGAGGGCCGCTGACGGAGTTG
TCACGTCCAGGAGTAGACGAAGGAAATCTGCGCGTGTATTGAAGCCCATC
AGCCCTGCTGCCAGTGACACCTTGGAAGAGAGGAGGTGAAGCACCAGCAC
GCCGTCATTTTGCCTGTTTTGTCGGTTAGTGTCGATGTATACCATTATTA
TGTGGTGCGTCGTTGTTTATCACATAGTTCACTATTCTGTTACGTTTAGT
TTTTGTAATCCGAGTCGCCTATTTACCTTCTTTACCCCAAACACACTCAA
CTATCTTCAACAGATCGTCGACGGTCGTACTTCACAAGGCAGACCCCTTC
GAGAGAGACTCGGAGCTTCTGGCACGCGGTAGCCTCGATCTTCAGCAAGC
GGCTAAACTTGTTGTGCTGAACCTAGGGGCCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:21929..22762+

>mRNA_P-littoralis_Contig678.16.1 ID=mRNA_P-littoralis_Contig678.16.1|Name=mRNA_P-littoralis_Contig678.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig678:21929..22762+ (Pylaiella littoralis U1_48)
ATGACGCACACAGGAGGCGGTTGCCGTGCATCCGAGAGCTTTGGCCAACG
CGACGACTTTGCCCACAGCCTTGGCGATAAAGCGAGAGTCTGTGTGGAAT
GTAAGCCCGCCCTGGAGCAGCAGGGACGAGCTTCCAACCAAAAGGAGAGG
GCCGCTGACGGAGTTGTCACGTCCAGGAGTAGACGAAGGAAATCTGCGCG
TGTATTGAAGCCCATCAGCCCTGCTGCCAGTGACACCTTGGAAGAGAGGA
GATCGTCGACGGTCGTACTTCACAAGGCAGACCCCTTCGAGAGAGACTCG
GAGCTTCTGGCACGCGGTAGCCTCGATCTTCAGCAAGCGGCTAAACTTGT
TGTGCTGAACCTAGGGGCCGAC
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