mRNA_P-littoralis_Contig677.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig677.37.1
Unique NamemRNA_P-littoralis_Contig677.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig677.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig677contigP-littoralis_Contig677:141349..142111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size763
Hectar predicted targeting categorymitochondrion
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791406.3369646-UTR-P-littoralis_Contig677:141348..1415301680791406.3369646-UTR-P-littoralis_Contig677:141348..141530Pylaiella littoralis U1_48UTRP-littoralis_Contig677 141349..141530 +
1680791406.3599699-UTR-P-littoralis_Contig677:141959..1421111680791406.3599699-UTR-P-littoralis_Contig677:141959..142111Pylaiella littoralis U1_48UTRP-littoralis_Contig677 141960..142111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791406.3501415-CDS-P-littoralis_Contig677:141530..1419591680791406.3501415-CDS-P-littoralis_Contig677:141530..141959Pylaiella littoralis U1_48CDSP-littoralis_Contig677 141531..141959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig677.37.1prot_P-littoralis_Contig677.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig677 141531..141959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig677.37.1

>prot_P-littoralis_Contig677.37.1 ID=prot_P-littoralis_Contig677.37.1|Name=mRNA_P-littoralis_Contig677.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MMRWHILLATCNSRARVLQVFLGRKTVHTVFVRPRPIQQVCVRVCCRVYV
SCRCFVDVLFVTWSVRRTGFDFVDHISQKKNDQGVISVHQCFPALGSHRQ
GLQMVACIYRILRGKFSCLSLPWCNQHACRARGVRGICHTPP*
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mRNA from alignment at P-littoralis_Contig677:141349..142111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig677.37.1 ID=mRNA_P-littoralis_Contig677.37.1|Name=mRNA_P-littoralis_Contig677.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=763bp|location=Sequence derived from alignment at P-littoralis_Contig677:141349..142111+ (Pylaiella littoralis U1_48)
GGGGGCGGGGCGGTAGAGCAGAGCTACCTACCTACGGCCGCGGCGTGTAG
GTGCAAATTCGGAAGTATATAATAGTAGGTGGATGAAGATGACTTTGACT
TCGTTCCCCGTGTTTGAATGTAAAAAGCAAAGTTGAGGCAGATTGAGGGT
CCTGATGACGGTATCAGTACAGCAGTAGTGGTATGATGCGATGGCATATT
TTGCTTGCCACCTGCAACTCTCGGGCACGTGTTTTGCAGGTTTTTTTGGG
CCGTAAAACTGTACACACGGTTTTTGTGCGCCCTCGTCCAATCCAACAAG
TGTGTGTGCGTGTATGCTGTCGGGTGTATGTGTCGTGCCGGTGCTTTGTT
GATGTACTTTTTGTTACATGGTCTGTCAGACGGACGGGTTTTGATTTCGT
GGATCACATCAGTCAAAAAAAAAATGATCAAGGTGTAATTAGTGTGCACC
AGTGCTTTCCAGCACTCGGAAGTCACAGACAAGGTTTGCAAATGGTTGCA
TGTATCTACCGTATACTAAGGGGCAAATTTAGTTGCTTGTCGCTGCCTTG
GTGCAACCAACATGCCTGTAGAGCTCGCGGGGTACGGGGGATATGTCACA
CCCCCCCGTGAGAAATGACTTGTTTCCTCCTGGAGACTTGAGTTGCCGTT
GCCTGGTTTTTGGTGAACATCGCGCATTCCGACGACAGGCATTTGAATGA
AATGCTTCACCACGTCGGTGAGAGTAATAAAGCTGCACCTCCTCTACGTG
GGTATGAGAAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig677:141349..142111+

>mRNA_P-littoralis_Contig677.37.1 ID=mRNA_P-littoralis_Contig677.37.1|Name=mRNA_P-littoralis_Contig677.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig677:141349..142111+ (Pylaiella littoralis U1_48)
ATGATGCGATGGCATATTTTGCTTGCCACCTGCAACTCTCGGGCACGTGT
TTTGCAGGTTTTTTTGGGCCGTAAAACTGTACACACGGTTTTTGTGCGCC
CTCGTCCAATCCAACAAGTGTGTGTGCGTGTATGCTGTCGGGTGTATGTG
TCGTGCCGGTGCTTTGTTGATGTACTTTTTGTTACATGGTCTGTCAGACG
GACGGGTTTTGATTTCGTGGATCACATCAGTCAAAAAAAAAATGATCAAG
GTGTAATTAGTGTGCACCAGTGCTTTCCAGCACTCGGAAGTCACAGACAA
GGTTTGCAAATGGTTGCATGTATCTACCGTATACTAAGGGGCAAATTTAG
TTGCTTGTCGCTGCCTTGGTGCAACCAACATGCCTGTAGAGCTCGCGGGG
TACGGGGGATATGTCACACCCCCCCGTGA
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