mRNA_P-littoralis_Contig67.55.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig67.55.2
Unique NamemRNA_P-littoralis_Contig67.55.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.210e-35
Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = 1 
Query:  163 GWSEKQKLMACYVEGIFLDIYQVPQTLGTGSNLVCTVVWLALARLFDMFGGPTV-LYIDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSRYG 504
            G+SE+QK+MA   EG F+D++ VPQT G GSNLVCT +WLAL RL  M   P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHTHIKIDQ+FSR+ 
Sbjct:   93 GFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 207
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.140e-34
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 1 
Query:  163 GWSEKQKLMACYVEGIFLDIYQVPQTLGTGSNLVCTVVWLALARLFDMFGGPTV-LYIDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSR 498
            G SE+QK+MA   EG F+D++ VPQT G GSNLVCT +WLAL RL +M+  P    +I  L L LDNCVGENKNNIVMAF+G LV  GV+G  EV F+ VGHTH K DQ+FSR
Sbjct:  208 GLSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSR 320
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.360e-26
Identity = 57/119 (47.90%), Postives = 76/119 (63.87%), Query Frame = 1 
Query:  160 RGWSEKQKLMACYVEGIFLDIYQVPQTLGTGSNLVCTVVWLALARLFDMFGG----PTVLYIDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSRYG 504
            RG+SE+QK+MA ++EG F+++Y  PQ LG G NL CT   LA+ R+ D +      P+   I      +DNCV ENKNN  + + G LV   VV  VE++FM VGHTH KIDQ+FSR+ 
Sbjct:  156 RGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFS 274
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.030e-25
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  250 GSNLVCTVVWLALARLFDMFGGPTV-LYIDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSRYG 504
            GSNLVCT +WLAL RL  M+  P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHTHIKIDQ+FSR+ 
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 95
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.360e-24
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  250 GSNLVCTVVWLALARLFDMFGGPTV-LYIDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSRYG 504
            GSNLVCT +WLAL RL  M+  P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHTHIKIDQ+FSR+ 
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 95
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.270e-21
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:  160 RGWSEKQKLMACYVEGIFLDIYQVPQTLGTGSNLVCTVVWLALARLFDMFGGPTVLY---IDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSRYG 504
            RG++E+QK+    V GI + ++ +PQ LGTGSN+VCT        LF +F   T+ +   +  + + +DN V ENKNN +M FL  LV  GV+  V + FM VGHTHI+IDQ+FS + 
Sbjct:  429 RGYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTT-------LFTLFMELTLQWKHSLGDVFIQMDNTVSENKNNFIMGFLAALVGRGVMRSVTLCFMMVGHTHIQIDQVFSCFA 539
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.580e-21
Identity = 53/84 (63.10%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:  250 GSNLVCTVVWLALARLFDMFGGPTV-LYIDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSR 498
            GSNL CT +WLAL RL  M+  P    +I    L LDNCVGENKNNIVMAF+G LV  GV+G  EV F+ +GHTHIKIDQ+FSR
Sbjct:   10 GSNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSR 93
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.960e-20
Identity = 55/93 (59.14%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:  229 VPQTLGTGSNLVCTVVWLALARLFDMFGGPTV-LYIDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSRYG 504
            VP  L  GSNLVCT +WLAL RL  M+  P    YI  L L L NCVGE KNNIV+AF+G LV  GVV   EV F+ VGHT IKID +FSR+ 
Sbjct:  277 VPALLCGGSNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSRFS 369
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BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.760e-16
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:  328 YIDVLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSR 498
            YI    + +DNCV ENKN+IV+ +LG LV  G++G VEV FM VGHTHIKIDQ+FSR
Sbjct:   10 YIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFSR 66
[Close]
BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-14
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  355 DNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQIFSRYG 504
            DNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHTHIKIDQ+FSR+ 
Sbjct:  213 DNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig67.55.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KA02_9PHAE1.210e-3562.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE3.140e-3461.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE1.360e-2647.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE1.030e-2565.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE2.360e-2465.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG9_9PHAE1.270e-2144.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE3.580e-2163.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE1.960e-2059.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE4.760e-1663.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE1.500e-1472.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig67contigP-littoralis_Contig67:350302..351464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7739.XP_002587783.1
Preferred nameEXOC1
PFAMsSec3-PIP2_bind,Sec3_C
Model size507
Max annot lvl33208|Metazoa
KEGG koko:K19983
Hectar predicted targeting categoryother localisation
GOsGO:0000145,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008289,GO:0009894,GO:0009898,GO:0009987,GO:0010506,GO:0016020,GO:0016192,GO:0016241,GO:0016324,GO:0017016,GO:0017048,GO:0017049,GO:0019222,GO:0019899,GO:0023052,GO:0031267,GO:0031323,GO:0031329,GO:0031503,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0035556,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0045177,GO:0046903,GO:0048015,GO:0048017,GO:0048193,GO:0048518,GO:0048522,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051601,GO:0051641,GO:0051716,GO:0065007,GO:0070201,GO:0070727,GO:0071944,GO:0090087,GO:0098552,GO:0098562,GO:0098590,GO:0098592,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936,GO:1903530,GO:1903532,GO:1904951
Exons3
Evalue1.27e-11
EggNOG OGsKOG2148@1|root,KOG2148@2759|Eukaryota,38EC2@33154|Opisthokonta,3B9M0@33208|Metazoa,3CWXP@33213|Bilateria,48923@7711|Chordata
DescriptionExocyst complex component
Cds size321
COG categoryU
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791395.1520128-UTR-P-littoralis_Contig67:350301..3504621680791395.1520128-UTR-P-littoralis_Contig67:350301..350462Pylaiella littoralis U1_48UTRP-littoralis_Contig67 350302..350462 +
1680791395.1698334-UTR-P-littoralis_Contig67:350959..3509841680791395.1698334-UTR-P-littoralis_Contig67:350959..350984Pylaiella littoralis U1_48UTRP-littoralis_Contig67 350960..350984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791395.1827855-CDS-P-littoralis_Contig67:350984..3510481680791395.1827855-CDS-P-littoralis_Contig67:350984..351048Pylaiella littoralis U1_48CDSP-littoralis_Contig67 350985..351048 +
1680791395.1944008-CDS-P-littoralis_Contig67:351207..3514641680791395.1944008-CDS-P-littoralis_Contig67:351207..351464Pylaiella littoralis U1_48CDSP-littoralis_Contig67 351208..351464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig67.55.2prot_P-littoralis_Contig67.55.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig67 350985..351464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig67.55.2

>prot_P-littoralis_Contig67.55.2 ID=prot_P-littoralis_Contig67.55.2|Name=mRNA_P-littoralis_Contig67.55.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MACYVEGIFLDIYQVPQTLGTGSNLVCTVVWLALARLFDMFGGPTVLYID
VLLLSLDNCVGENKNNIVMAFLGCLVLIGVVGRVEVNFMQVGHTHIKIDQ
IFSRYG*
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mRNA from alignment at P-littoralis_Contig67:350302..351464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig67.55.2 ID=mRNA_P-littoralis_Contig67.55.2|Name=mRNA_P-littoralis_Contig67.55.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1163bp|location=Sequence derived from alignment at P-littoralis_Contig67:350302..351464+ (Pylaiella littoralis U1_48)
AAGAATGCCAGTTTCTGAAGCTCACACAAGGGAGAGACTTTATGCTCTGC
AATGTTTGTACGCTAGCGAACCAAACCCTTCATGGAACACCCGGGGGAGA
GGCTACGACTGACTCCTCGATCAGAGAGTCGACAGAAGCGGCTCTCGCTA
CACATCTAAAGGTAAATAGTCACCCGTTCAACCCAGCCAAAAAAAGATAA
TTAAAGACAACAAATACTAAATTGTCACGTCGAGTTCATGCGTCATCGTC
CTCTGATAATAACCTCCGGCGCAACCTGCGTGAAGAAACGTGTGCTTTGT
CCGATGACAAACCGTTCTGTCCCCTGCAACACTGCAGACCGTCAATCTTG
ATCGCCAGGTACTGATGGACATCAAGTATCGTGCCCTTCGCGCGGTTTCC
GGAAGAAAACATTTGCGTTGCGTTTCGATGATGGTCGATGCAGCAAACCA
GGATAAATGGGACGTGCCCCATCTCTTTcCCGAGACGCACGAAAGTGACG
GGTGGaataGATAGATGGTACTTTAGTGGCATAGATCACAAACGCCTTAC
GACTGGTCATCATGTGAACGGGATAGACACGACCAGAGGTGCCTTGATAA
CCCGCGTTCAACAACTTATTGAATGATCCCCACCTTGCCCAACCCTATTT
CGTACCAGGGGTTGGAGTGAAAAGCAAAAGCTCATGGCCTGTTACGTGGA
AGGTATTTTTCTCGACATCTATCAAGTTCCCCAGACCCTTGGGACAGGTA
TGAAAGTCGGTGCTTTCTCCTCTGTAGTTTTCAACTAACGAACTGCGTAC
AGCAGCCTGTACAGGTCATTTCTGCAAAGTCCTGGCATGAGATTGCAAGA
AATCCTTATCTACTCTATAATTTCACTCTTTCCTGCTCTGTTTGTTTCCT
TGTCAGGGAGTAACCTTGTCTGCACTGTGGTGTGGCTAGCGTTGGCTCGA
CTGTTTGACATGTTCGGCGGCCCCACGGTACTGTACATCGACGTGTTGCT
TCTATCCCTGGACAATTGTGTCGGTGAAAACAAAAACAACATTGTCATGG
CCTTCCTGGGATGCTTGGTGCTGATAGGGGTCGTTGGGAGAGTGGAAGTA
AACTTTATGCAAGTTGGACACACACACATAAAAATCGATCAGATTTTTTC
CAGGTACGGATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig67:350302..351464+

>mRNA_P-littoralis_Contig67.55.2 ID=mRNA_P-littoralis_Contig67.55.2|Name=mRNA_P-littoralis_Contig67.55.2|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig67:350302..351464+ (Pylaiella littoralis U1_48)
ATGGCCTGTTACGTGGAAGGTATTTTTCTCGACATCTATCAAGTTCCCCA
GACCCTTGGGACAGGGAGTAACCTTGTCTGCACTGTGGTGTGGCTAGCGT
TGGCTCGACTGTTTGACATGTTCGGCGGCCCCACGGTACTGTACATCGAC
GTGTTGCTTCTATCCCTGGACAATTGTGTCGGTGAAAACAAAAACAACAT
TGTCATGGCCTTCCTGGGATGCTTGGTGCTGATAGGGGTCGTTGGGAGAG
TGGAAGTAAACTTTATGCAAGTTGGACACACACACATAAAAATCGATCAG
ATTTTTTCCAGGTACGGATAG
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