mRNA_P-littoralis_Contig67.5.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig67.5.3
Unique NamemRNA_P-littoralis_Contig67.5.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: A0A6H5JUF1_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF1_9PHAE)

HSP 1 Score: 379 bits (972), Expect = 4.950e-126
Identity = 180/236 (76.27%), Postives = 202/236 (85.59%), Query Frame = 2
Query:  479 AWAGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQGNGEPAVLGFLSNVMAPLL 1186
            AWAGGSASSFNKW S +PEAVELHAL+ PGRM RSKED LTSV AIVEGV++ALV  GLLDKPFALFGHSFGSLVMFELARKL  D G+ PV L+VSGC PPDMC+GGGRSP +SQLPRDALVDHLI LGGMP ELR++TELVDYFLPPIRADY A+E YRY+PRPG+D  PITC ++CLGG++D GAPR+DLE W+S TAGEFR++ F GGHFFLQG GE AVL FL NV+   L
Sbjct:   27 AWAGGSASSFNKWTSKMPEAVELHALEFPGRMRRSKEDSLTSVSAIVEGVAQALVTMGLLDKPFALFGHSFGSLVMFELARKLKEDAGKIPVYLVVSGCCPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAYEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLELWSSLTAGEFRLQMFGGGHFFLQGEGEQAVLTFLGNVLTEKL 262          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: A0A0N1GBM7_9ACTN (Oleoyl-(Acyl-carrier-protein) hydrolase n=1 Tax=Actinobacteria bacterium OK074 TaxID=1592327 RepID=A0A0N1GBM7_9ACTN)

HSP 1 Score: 161 bits (407), Expect = 3.330e-42
Identity = 100/232 (43.10%), Postives = 129/232 (55.60%), Query Frame = 2
Query:  482 WAGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLD-KPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQGNGEPAVLGFLSNVM 1174
            +AGG A+ F  W + L   V++ A QLPGR +R  E  +TS   + + +++AL  T LLD  P+ALFGHS G+L  F LAR L A  G  P  LIVSGCR P           +S+L   ALVD L   GG P E+ +  EL+D  LP +RAD    + + Y P P  DCP     L  LGG DD+  P   L+ W   T GEFR+R F+GGHFFL    E +VL  L  ++
Sbjct:   30 YAGGHANLFAPWHTALRPTVDVRAFQLPGRHARRDEPPITSFGPLADRLTDAL--TPLLDGSPYALFGHSMGALAAFALARTLTAH-GTPPAQLIVSGCRAPS----DPPEEPLSRLADAALVDRLRTWGGTPQEVLDNPELLDVVLPVLRADLSVVDSHTYCPAPPLDCP-----LTVLGGTDDAVVPPAGLDAWRRETNGEFRLRLFDGGHFFLH-TAEESVLAELGRIL 248          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: A0A7W1YQQ1_9CHLR (Thioesterase n=1 Tax=Herpetosiphonaceae bacterium TaxID=2720503 RepID=A0A7W1YQQ1_9CHLR)

HSP 1 Score: 160 bits (405), Expect = 6.820e-42
Identity = 91/231 (39.39%), Postives = 121/231 (52.38%), Query Frame = 2
Query:  482 WAGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQGNGEPAVLGFLSNVM 1174
            +AGG A +F  W  LLP  VEL  + LPGR  R  E  L S+PA+VE ++  L+    LD+PFALFGHS G L+ FE+ R+L       P CL +S  R P +     R   V QLP  A ++ L  L G P E+ +  ELV+  LP +RAD+  FE Y+Y P        +TC L   GG  D    R DL  W   T+  F +R   G HFF+  +  P +L  L+  +
Sbjct:   27 YAGGGALTFRPWQQLLPREVELCLIHLPGREQRLAEPALPSLPALVEALTPKLLPW--LDRPFALFGHSMGGLISFEVVRELRRQQQTEPSCLFLSAIRAPQL---RPREAPVHQLPTAAFLERLRQLNGTPEEVLSNPELVEVMLPALRADFELFERYQYLPAES-----LTCPLTVFGGLQDRDVTREDLMAWREQTSDRFELRMLPGDHFFINTH-RPLLLQLLATAL 246          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: A0A326U590_9CHLR (Surfactin synthase thioesterase subunit n=2 Tax=Thermosporothrix TaxID=768650 RepID=A0A326U590_9CHLR)

HSP 1 Score: 159 bits (403), Expect = 1.360e-41
Identity = 83/216 (38.43%), Postives = 118/216 (54.63%), Query Frame = 2
Query:  482 WAGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQ 1129
            +AGG AS++  W   LP+ +EL A+QLPG  +R KE   T +P++VE ++EAL+   +LD+PFA+FGHS G+L+ FEL R L     R+P  L +SGCR   +       P V  L  + L+D+L    G P E+    E++   LP  RAD+  +E Y+Y+        P++C +   GG  DS      L+ W   T G F      G HFFLQ
Sbjct:   29 YAGGGASAYRSWQQQLPDTIELCAVQLPGHETRLKEQAYTHLPSLVEAMAEALLP--VLDRPFAIFGHSMGALLSFELTRYLRKHAQRSPEHLFLSGCRAAHL---PRTEPDVHTLSDEGLIDYLRRFNGTPEEILQNEEMMQLLLPIFRADFTLYETYQYQHEE-----PLSCPITVFGGHQDSSVSYQQLQAWRDHTRGAFAAHMLPGNHFFLQ 234          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: UPI001F5D8756 (alpha/beta fold hydrolase n=1 Tax=Streptomyces sp. MST-110588 TaxID=2833628 RepID=UPI001F5D8756)

HSP 1 Score: 158 bits (400), Expect = 5.520e-41
Identity = 91/218 (41.74%), Postives = 120/218 (55.05%), Query Frame = 2
Query:  479 AWAGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVAT-GLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQ 1129
            A AG   S F  W  +LP   EL  +QLPGR  R +E+  T +PA++ G+S AL AT G    P  LFGHSFG+LVM++LAR+++A        L+VSG   P       R+ ++S+L    L+D L  LGG P EL +ET    + L  +RA Y   E Y   P P     P+TC ++  GG +D  A   DL+ WA  T G FR  T  GGHFFL+
Sbjct:   34 AGAGSGPSEFVTWHEVLPPDTELWPIQLPGREKRLREEPYTDLPALMAGLSAALEATEGATPLPLVLFGHSFGALVMYDLARRISARQPHRVQGLLVSGLAAPGRPT---RNQEISRLGDADLLDWLRHLGGTPTELLDETWFATWLLRDVRASYRIREAYAAAPAP-----PLTCPVIAFGGQEDFEADAADLDAWARLTTGRFRSHTLPGGHFFLR 243          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: A0A1Q7ZXI5_9BACT (Thioesterase domain-containing protein n=6 Tax=Bacteria TaxID=2 RepID=A0A1Q7ZXI5_9BACT)

HSP 1 Score: 157 bits (398), Expect = 8.560e-41
Identity = 88/218 (40.37%), Postives = 119/218 (54.59%), Query Frame = 2
Query:  482 WAGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGC---RPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFL 1126
            +AGG A +F +WP +LP + ++ A  LPGR  R  E     +  ++  ++EAL+   LLDKPFA+FGHS G+L+ +E  R L    G  PV L+VSGC   + PD C        +  LP++  V  L  L GMP E+    EL++  LP +RAD+ A E Y Y      D PP++CS+  LGG  D    R  LE W   T G F MR   G HFF+
Sbjct:   21 YAGGGAQAFQQWPDILPPSFDVWAANLPGRGKRLMESAFFQLSGLIAALTEALMP--LLDKPFAIFGHSMGALIAYETVRTLKKLHGPMPVHLLVSGCFAPQLPDPC-------HIHHLPQEEFVRELRRLNGMPKEILENQELMELVLPSLRADFTATETYVYN-----DEPPLSCSISVLGGWRDPLTTRESLEAWRIHTTGYFSMRMLPGDHFFI 224          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: UPI001574BDD2 (alpha/beta fold hydrolase n=1 Tax=Rhizobium skierniewicense TaxID=984260 RepID=UPI001574BDD2)

HSP 1 Score: 157 bits (398), Expect = 8.800e-41
Identity = 86/220 (39.09%), Postives = 119/220 (54.09%), Query Frame = 2
Query:  482 WAGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQGNGE 1141
            +AGG+A+ +  WP  L   V++  L LPGR  R +E  L  V  I +  +EAL+    LD+P+ALFGHS G+ V FE+AR+L       P CL VSG   P +   G     +  LP DA +D ++ L G P E+    +L+D  LP +RAD+ A E Y   P P     P+TC +V LGG +D   P   +E W   + G FR  +F G HFF++   E
Sbjct:   33 YAGGNAALYRDWPKWLGPKVDVCPLHLPGRGRRFREKPLYRVSDIADQAAEALLQH--LDRPYALFGHSMGASVAFEIARRLRRHGAPEPGCLFVSGRSAPHLPKEGDN---IHALPDDAFIDAVMRLNGSPPEVLKHPDLIDLILPTLRADFEAVETYHLTPEP-----PLTCPIVALGGREDPDLPATSIEAWRVHSTGTFRHESFPGDHFFIRAQDE 242          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: A0A1C4W026_9ACTN (Medium-chain acyl-[acyl-carrier-protein] hydrolase n=2 Tax=Micromonospora TaxID=1873 RepID=A0A1C4W026_9ACTN)

HSP 1 Score: 157 bits (396), Expect = 1.700e-40
Identity = 91/216 (42.13%), Postives = 120/216 (55.56%), Query Frame = 2
Query:  482 WAGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQ 1129
            +AGG AS F  WP+     +E+ A+QLPGR SR  +     V  +V  V   L   GLLD+PFALFGHS G+LV FE AR+LAA     P  L VS    P +       P+   LP D L+D +  +GG PA++  +  L+   LP +RAD+   + Y ++P P  DCP     +  LGG DD  AP   LE WA  T G FR+  F+GGHF+L+
Sbjct:   38 YAGGGASVFASWPAGTGPDIEVCAVQLPGRESRLGQRPFQDVRTLVSAVEAGL--GGLLDEPFALFGHSMGALVAFEFARRLAARGRPAPAHLFVSARPAPHLPRPW---PRAHLLPDDQLIDRIRQIGGTPAQVLADARLMRLVLPVLRADFAVNDGYVHRPGPLLDCP-----VTALGGRDDPEAPPRVLEAWARHTTGPFRLHRFDGGHFYLR 243          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: A0A7V4U0V4_9BACT (Thioesterase n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V4U0V4_9BACT)

HSP 1 Score: 155 bits (393), Expect = 4.080e-40
Identity = 80/214 (37.38%), Postives = 117/214 (54.67%), Query Frame = 2
Query:  485 AGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFL 1126
            AGG++++F  WP  LPE +E+ A+++PG  SR  ED +  +  +V+ ++E +     LD+PFA FGHS GSL+ FELA  L    G  PV L  SG   P +     R   +  LP+   V H+ +  G P E+    EL+D  +P +RAD+   E Y+Y P+P     P  C +   GG  D    ++DL+ W   T+G F +R F G HF+L
Sbjct:   30 AGGNSTAFRNWPDYLPETMEVAAVEIPGHGSRLAEDTIRRLIPLVKAIAEGI--DPYLDRPFAFFGHSMGSLLSFELAHYLRLKKGVEPVHLFFSGRGAPHL---PAREEPIHGLPQAEFVQHIRNYNGTPKEVLEHQELMDILIPILRADFEVCETYQYFPKP-----PFNCPITAFGGLQDPSTTKDDLQGWKKHTSGAFNLRMFPGDHFYL 233          
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Match: A0A410RS52_CORCK (Thioesterase domain-containing protein n=7 Tax=Myxococcaceae TaxID=31 RepID=A0A410RS52_CORCK)

HSP 1 Score: 155 bits (391), Expect = 4.150e-40
Identity = 93/232 (40.09%), Postives = 122/232 (52.59%), Query Frame = 2
Query:  485 AGGSASSFNKWPSLLPEAVELHALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGSLVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALVDHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPITCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQGNGEPAVLGFLSNVMAP 1180
            AGG AS F  W   LPE VE  AL+LPGR +R +E     +  +V+G+++ L    LLD+PFALFGHS G L+ FEL R+L       P  L +S    P        SPQV  +  +A +  L+ L G P E+     L+D  +P IRAD+   E Y Y+  P     P+   L  LGG+DD    R  LE WA  T   F ++ F GGHFFL+ N EP +L     V+ P
Sbjct:    9 AGGGASVFRTWHRDLPETVEGCALELPGRGARIRELPSLRLEPLVQGLADTLEP--LLDRPFALFGHSMGGLISFELVRELRRRHAPLPCHLFISAFAAPQHSRW---SPQVHLMSNEAFLQFLVRLEGTPPEVLASPGLMDMLMPIIRADWAVIESYTYRREP-----PLPVPLTVLGGEDDKAVARVALEEWAEQTRESFALKMFPGGHFFLRTNAEP-LLQLFRQVLQP 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig67.5.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUF1_9PHAE4.950e-12676.27Thioesterase domain-containing protein n=2 Tax=Ect... [more]
A0A0N1GBM7_9ACTN3.330e-4243.10Oleoyl-(Acyl-carrier-protein) hydrolase n=1 Tax=Ac... [more]
A0A7W1YQQ1_9CHLR6.820e-4239.39Thioesterase n=1 Tax=Herpetosiphonaceae bacterium ... [more]
A0A326U590_9CHLR1.360e-4138.43Surfactin synthase thioesterase subunit n=2 Tax=Th... [more]
UPI001F5D87565.520e-4141.74alpha/beta fold hydrolase n=1 Tax=Streptomyces sp.... [more]
A0A1Q7ZXI5_9BACT8.560e-4140.37Thioesterase domain-containing protein n=6 Tax=Bac... [more]
UPI001574BDD28.800e-4139.09alpha/beta fold hydrolase n=1 Tax=Rhizobium skiern... [more]
A0A1C4W026_9ACTN1.700e-4042.13Medium-chain acyl-[acyl-carrier-protein] hydrolase... [more]
A0A7V4U0V4_9BACT4.080e-4037.38Thioesterase n=1 Tax=Caldithrix abyssi TaxID=18714... [more]
A0A410RS52_CORCK4.150e-4040.09Thioesterase domain-containing protein n=7 Tax=Myx... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig67contigP-littoralis_Contig67:34445..38653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKB7
Preferred nameOLAH
PFAMsThioesterase
Model size1657
Max annot lvl2759|Eukaryota
KEGG rclassRC00014,RC00039
KEGG koko:K01071
KEGG ReactionR04014,R08157,R08158
KEGG Pathwayko00061,ko01100,map00061,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016295,GO:0016296,GO:0016297,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0016790,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0047381,GO:0051791,GO:0051792,GO:0071704,GO:0072330,GO:1901576
Exons6
Evalue2.62e-127
EggNOG OGsCOG3208@1|root,2RGSQ@2759|Eukaryota
EC3.1.2.21
Descriptiondodecanoyl-[acyl-carrier-protein] hydrolase activity
Cds size792
COG categoryQ
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig67.5.3prot_P-littoralis_Contig67.5.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig67 34913..38256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791391.8796859-UTR-P-littoralis_Contig67:34444..349121680791391.8796859-UTR-P-littoralis_Contig67:34444..34912Pylaiella littoralis U1_48UTRP-littoralis_Contig67 34445..34912 -
1680791391.9785478-UTR-P-littoralis_Contig67:38256..386531680791391.9785478-UTR-P-littoralis_Contig67:38256..38653Pylaiella littoralis U1_48UTRP-littoralis_Contig67 38257..38653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791391.8938854-CDS-P-littoralis_Contig67:34912..351591680791391.8938854-CDS-P-littoralis_Contig67:34912..35159Pylaiella littoralis U1_48CDSP-littoralis_Contig67 34913..35159 -
1680791391.9093978-CDS-P-littoralis_Contig67:35583..357381680791391.9093978-CDS-P-littoralis_Contig67:35583..35738Pylaiella littoralis U1_48CDSP-littoralis_Contig67 35584..35738 -
1680791391.9274085-CDS-P-littoralis_Contig67:36365..365181680791391.9274085-CDS-P-littoralis_Contig67:36365..36518Pylaiella littoralis U1_48CDSP-littoralis_Contig67 36366..36518 -
1680791391.937657-CDS-P-littoralis_Contig67:36841..368991680791391.937657-CDS-P-littoralis_Contig67:36841..36899Pylaiella littoralis U1_48CDSP-littoralis_Contig67 36842..36899 -
1680791391.9506426-CDS-P-littoralis_Contig67:37380..374781680791391.9506426-CDS-P-littoralis_Contig67:37380..37478Pylaiella littoralis U1_48CDSP-littoralis_Contig67 37381..37478 -
1680791391.9637766-CDS-P-littoralis_Contig67:38175..382561680791391.9637766-CDS-P-littoralis_Contig67:38175..38256Pylaiella littoralis U1_48CDSP-littoralis_Contig67 38176..38256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig67.5.3

>prot_P-littoralis_Contig67.5.3 ID=prot_P-littoralis_Contig67.5.3|Name=mRNA_P-littoralis_Contig67.5.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=264bp
MASPLSGTSTWSVRCRAQPLWGGPSDQAWAGGSASSFNKWPSLLPEAVEL
HALQLPGRMSRSKEDCLTSVPAIVEGVSEALVATGLLDKPFALFGHSFGS
LVMFELARKLAADTGRTPVCLIVSGCRPPDMCLGGGRSPQVSQLPRDALV
DHLIDLGGMPAELRNETELVDYFLPPIRADYGAFECYRYKPRPGEDCPPI
TCSLVCLGGDDDSGAPRNDLEHWASFTAGEFRMRTFEGGHFFLQGNGEPA
VLGFLSNVMAPLL*
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mRNA from alignment at P-littoralis_Contig67:34445..38653-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig67.5.3 ID=mRNA_P-littoralis_Contig67.5.3|Name=mRNA_P-littoralis_Contig67.5.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4209bp|location=Sequence derived from alignment at P-littoralis_Contig67:34445..38653- (Pylaiella littoralis U1_48)
GGACCGTCTTCGCGAGACTGTCATACTGTTACAAGTATACCAAATCAGAA TATCGGTGACTTGTTGACTTGTTCCAGGATCAGCCAGAACACAGCGCCCG CAGCAGGACCGCACCCACAGCACCGCCGTGCAACGCTTGTTTACGTACCA CTGTCGCAAGAGCTGCTGCAGGGCTACGGCCTCCCTACCTCTATTCGATC AACCAGCGCACTCGCGATGTGCTCCCTGAGGTAATCGAAGTCTCCCTCCC AGTCCGCAGCGGCGGCTCGGTCTCGTTGCCGTCGTTTGGCGGCGCGATCG AAGACGTTCACTGCTGGCGTGCTGCCGTCACCTCCGCTACCTCCTCCGCT TCCAGCGAACGGTCGGCGTGCTAATCTTGATCCCAAGTGGATCCGCCATG GCTTCACCGCTGTCAGGCACCTCGACATGGTCTGTGCGATGTCGTGCACA GCCACTCTGGGGAGGTCCAAGTGACCAAGTGAATGTGCTGTCGTGATTAG GGAGTAGGACAGCGGGGCACCGCAGGCACATATGATAAGCCGGGTGGTAT CGAAATGTGTTGGCATTAACGTTCGGGAGCAATCAATAATATGTTTCACA CACACACATGGGCACACCTGCCCAGGCATGAGCTCTGCTACTCTTGAGAA GTGGGTCGTCTGTCGTCGGGCGAAGCCGGATGCCTCAGTTCGGCTCTTCT GCGCTGTGAGACGAGCCCGGTCTTTTCGTCTTTCCCTCTGTGTCGTGTGG TGCTGACCTGATCATGTTTTTTTTTTCCCGACTCAATACAACAGACGGCA TGTTCTGCATAGGTATATTGACTATACTGTATCGCCTCCCTCCCACCAAC AATCACTTCGTACCTGAATTACTGTAATTATCCTGCATCAATCGCGATAC TCGATACGCGGTATGCGATTTCGATACTGTATCGGCATATCGCCCCCAAA ATTATCGTTTTGTGTGCTTTGAGCGCATCGCAGCGTGTGTCCATATGCTA CAGCAGTGGCGGTAAACCGTGACCCACGTGGTGTTGAGGTCATCATGGCT CTCTTGGTTTTACCATTGTGAAAACCTTTCACTGTACAGGACAACGGAGA CAACGGGCGGTGCCGATACTTCAGCAGTAGTGCTCTAATCTCTTCTATGA TATTGTTGTGTTTCGTGGTAAACAGGCATGGGCAGGCGGCAGCGCGAGCT CGTTCAACAAGTGGCCTTCCCTGCTACCGGAGGCAGTAGAGCTACACGCG CTTCAGCTCCCCGGAAGGATGAGGTGCGGCGCATTGTGTGTCAATAAAAA ACGCCGTGGGCGGCTTCCGATAGCATCCTCGCGCTTGTCGACGAACAAGC GGTGTTCCAATCGAATGGCAAAAGTATCGAATGCCAAAAGTGTACGCGCA CATTCACACGAGCCCGCTTGGAAAAAGCTGCAGTTTCATTGAGTTGCCCG CTCCTGCATCTCGGTACAAGTAGTACCACCGGGGCGGTTAGTACCGCATC TTTTTTACCTCCTCACCACCTACTGCCCAGAGTAAATGGTGGTTTGTATG GATCATGCGCTGACGTATGCATGGGTATTACGGCAGTAAAGTCGAGGGTC CAATTTACGTCTACATTCACTAGTCTGTGGCGTGCTAGCACCGAACAGCG TACGCTCGCGGACCTTGTGATTCTCGTGATGTTTGCTCCAACCATGCCCA CTCAATGTGATGCAACATATTGCGCATGTTTTTTGTAATGGCTGTTGGTG ATAGCCGGTCTAAGGAGGACTGCCTGACGAGCGTCCCTGCCATCGTTGAA GGGGTTTCGGAGGTAAGAGGGAGGGTGGGCGGGATATATTTGTGCGCATT TGGTGCGAAGCAGTCGTGATGTGGTCTATGATGGCGATACTTTGGGCCAG CAACGGCCAGAAAGACATTGGGAAGGGGTAGGTGGGAGGGTGGGGCTAAG AGGACAGATACCTGGTGAAGAAATGAGGCAGCGAGGGGGCGGGAGAGGTG TCAAAACCGACCGTACGCAGCCACGTCGCATTTTTCGCTTTCCTCCGAGC GCTTGGTTTCGGTTCCCCGCTTTACTCGCGTGACTCCGCCGTCCGCACAC CGCCAACACACCGGCCGATCGCCCCCGCCCGCCAGGCCCTGGTCGCGACG GGACTGCTCGACAAGCCGTTCGCACTATTTGGGCACAGCTTTGGGTCTCT CGTGATGTTCGAGCTGGCGCGAAAGCTTGCCGCAGATACCGGGAGGACCC CGGTTTGCCTTATCGTATCCGGCTGCCGCCCTCCAGACGTAAGTTGCGAC AGAAGTACACCAACTAAAACATGACGGACCGCGAATAATTGCTACCAATG TTTTTACCGTATTTTGCTCTGTGTACCGTGGTGTGTTTTTTCCCTCGTAG TGGCAGCTTCGAACATATCTGTAACGCTCGACCGATTCGCTCGTCGCAGA CTAGACCAGTTTCTGCAAACACCCGGAGGAAGCCAACCCCCCTCAACATG CCTCGTAGTTTCCAGTGCTTTCGCACCAGTATTGATCGCGTCTAGCGAGG CGAGCTATGGTGTGCACGGATGTTACTTGTGCCAGACGTGTGTGTGACCA CCCGCATATGGCACCTACGGTAACCGCGTGCCCAAGGCTCATAGAACACG CTCGCCTGGTCCAATCTCCTTACCCTATTGCCGCTTCGTTTTTTTTTGTA AACTTCGCGCTAGTAGAAAGGGGATGCGTGTGGGTAGAGTACAATCTCGA AAAAACAGAGAAAGCCACGCTAGCTGTCGTTTCGGCACCGGGTACCGGTG GTTTCACGTTCTTGAATCTAATGGTGCGACACTCCCCCCCCCCACGCACA CATACGCACACAACGAACACTGGCTGTCGGTGCGCATGATTGTTTTTTTC GTGTGGACGCCCCAGATGTGCTTGGGGGGTGGGCGGTCACCTCAGGTTAG CCAGTTGCCGCGAGACGCCTTGGTCGACCACCTCATCGATCTTGGGGGTA TGCCAGCCGAGCTGAGGAACGAAACTGAGCTTGTCGACTATTTTCTCCCC CCGATTCGGGCAGACTACGGGTGCGAGAGAGGAGTCGGAAAGCTCGGATG GAACATCCCTTGCAACTGCATAGAGTAGTCCGAAAGGGGGTGTTGAACGG AGAAAACAATGGGATTGATTGCTTGAAAACTAGTTTATAAGGTGCAACCT TTTCGGCGGCGGTGTAGTTTTGCTGTGAAGGGGCGTAAAATACGAATTTT GCACGTTTTTAGCGGATATGACATTATATGACATCTCTGTGGTTTTTACG CCTGGGCAAAATCGTTTGCAGAAGATCGCTCGTGCGCTGACAGCAACGCA CCCCGCGTGAGCTCTTTCGATCTCGTGCACGTACGTATCGCGTCTGCACG CCGAGTCTTAAATCAAGTCCGTGGCCGCTACTTCTCTCGATCGCGTTTTG TTTCCCCCCACCCGGTCGGATTTGGCTGTCGAAAACAATTGAAGTGCCTT TGAGTGCTACAGGTACAAACCTCGCCCGGGGGAAGATTGCCCGCCGATCA CGTGCTCCCTCGTCTGCCTCGGCGGGGATGACGACAGCGGGGCCCCGCGG AATGATCTGGAGCACTGGGCAAGCTTCACGGCGGGGGAGTTCCGCATGCG GACGTTCGAGGGGGGGCACTTCTTCTTGCAGGGCAACGGAGAGCCGGCGG TGTTGGGATTTTTGAGTAACGTGATGGCTCCACTGCTGTGACGGGGGTAC GACGTGTGTGGTGCGCCTTTGTTTGGGCCGCTGCTGCGCTATTGAGAGGG GCGACGAGTCCAATAAGGGTGAAACGTCGCGGAGCGCTCGCCGGAGGGGG GGGCAACGGCGAGCGGCGCTTGGGCTTGTTATTATTTAGTTGTGTGTTGG GTAAATGGTGGGCATGCTGTTTTTTTTCGAGTATTGTCAATACGTAAGAA GCAATGATTTTCATTCAGGGAGGAGCGGGAAGAGTGCTTCGGTGCCACTG TCTGTTGTGGCGACGTTGTTGCGTTGGTCCTAGACCGGTTCGAGTCATTT TGGTGTGTGGGTAATTGGGCTGTCGGTGTTCAAGAGCGTGCTCGGTGCGT GGCCCCGTTTCGACGCTATCTTACTTCTGGATAAGCCACGTGATACCCTT TATTTCTACAAACCAGACGCTGCTACGACGTCGAGACGACACGAACACCA GTCAAGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig67:34445..38653-

>mRNA_P-littoralis_Contig67.5.3 ID=mRNA_P-littoralis_Contig67.5.3|Name=mRNA_P-littoralis_Contig67.5.3|organism=Pylaiella littoralis U1_48|type=CDS|length=792bp|location=Sequence derived from alignment at P-littoralis_Contig67:34445..38653- (Pylaiella littoralis U1_48)
ATGGCTTCACCGCTGTCAGGCACCTCGACATGGTCTGTGCGATGTCGTGC
ACAGCCACTCTGGGGAGGTCCAAGTGACCAAGCATGGGCAGGCGGCAGCG
CGAGCTCGTTCAACAAGTGGCCTTCCCTGCTACCGGAGGCAGTAGAGCTA
CACGCGCTTCAGCTCCCCGGAAGGATGAGCCGGTCTAAGGAGGACTGCCT
GACGAGCGTCCCTGCCATCGTTGAAGGGGTTTCGGAGGCCCTGGTCGCGA
CGGGACTGCTCGACAAGCCGTTCGCACTATTTGGGCACAGCTTTGGGTCT
CTCGTGATGTTCGAGCTGGCGCGAAAGCTTGCCGCAGATACCGGGAGGAC
CCCGGTTTGCCTTATCGTATCCGGCTGCCGCCCTCCAGACATGTGCTTGG
GGGGTGGGCGGTCACCTCAGGTTAGCCAGTTGCCGCGAGACGCCTTGGTC
GACCACCTCATCGATCTTGGGGGTATGCCAGCCGAGCTGAGGAACGAAAC
TGAGCTTGTCGACTATTTTCTCCCCCCGATTCGGGCAGACTACGGTGCCT
TTGAGTGCTACAGGTACAAACCTCGCCCGGGGGAAGATTGCCCGCCGATC
ACGTGCTCCCTCGTCTGCCTCGGCGGGGATGACGACAGCGGGGCCCCGCG
GAATGATCTGGAGCACTGGGCAAGCTTCACGGCGGGGGAGTTCCGCATGC
GGACGTTCGAGGGGGGGCACTTCTTCTTGCAGGGCAACGGAGAGCCGGCG
GTGTTGGGATTTTTGAGTAACGTGATGGCTCCACTGCTGTGA
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