mRNA_P-littoralis_Contig669.42.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: D7G462_ECTSI (Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G462_ECTSI) HSP 1 Score: 288 bits (736), Expect = 2.020e-94 Identity = 140/202 (69.31%), Postives = 161/202 (79.70%), Query Frame = 3
Query: 192 LDSSQMGSFSGKKRSPQSIPAFIGPLVRSRHTVPCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKMLSWSRAGAGEDGSLAHSSPRETDGSLGDLCRGISEQVQIFGDKQR 797
++SS + G +P IPAFIGPLVRSR T PCPTYFEVSFL+SK R P +RLDAIVF+NFYCSHITIK+R+Q+ TA A GK GDPW+TILRDRPLMEDPH+EDDAQYWHVV ++EFD E++D ESTAP+RIYLYQSSPMWKT GLHHVK + WSRAG+ G RE DG+LGDLCRGISEQV+IFGDK R
Sbjct: 1 MESSATAAVRGA--NPYPIPAFIGPLVRSRQTTPCPTYFEVSFLESKLPRKPARRLDAIVFKNFYCSHITIKQRRQRFDTATAADCGKDGDPWLTILRDRPLMEDPHHEDDAQYWHVVRSEEFDPEEYDAESTAPIRIYLYQSSPMWKTFGLHHVKAVGWSRAGSSNGG---RDDEREADGNLGDLCRGISEQVKIFGDKHR 197
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A836CPK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK3_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.780e-18 Identity = 52/148 (35.14%), Postives = 79/148 (53.38%), Query Frame = 3
Query: 246 IPAFIGPLVRSRHTVPCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAP---------LRIYLYQSSPMWKTLGLHHVKM 662
+P +GPLV++R PC YFEV+ L + K+ P + VF+N+Y SH+T++ ++ GG W T+L PLM DPHYE DAQ+WHV+ + E + +R+ L+QSSP+W+ + L H K+
Sbjct: 15 LPILLGPLVQTRSQRPCLLYFEVTLL--QPKQTPPGAV--FVFQNYYASHVTLRVQR---------GGASDAFDWETVLDRHPLMRDPHYEGDAQHWHVLPLPQRVVELANGNEGGGGEGDGGVRCVRVCLHQSSPLWERVELRHFKL 149
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A0H5QY21_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QY21_9EUKA) HSP 1 Score: 89.7 bits (221), Expect = 1.010e-17 Identity = 55/123 (44.72%), Postives = 66/123 (53.66%), Query Frame = 3
Query: 291 PCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTA-PLRIYLYQSSPMWKTLGLHHV 656
PC Y E+ F P +D IVFRNFYC +TI + + A G G W TILR LM DPHYEDDAQY H +++DEF+ E F E LR YL Q SP WK+ GL +
Sbjct: 26 PCLIYQEIQF------SAPAN-IDHIVFRNFYCFALTITQ-------STANGSSDGAPYWTTILRSYKLMTDPHYEDDAQYSHRISSDEFE-EPFSREVPVYALRFYLEQPSPNWKSFGLRDL 133
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A7S3JF62_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JF62_9SPIT) HSP 1 Score: 64.3 bits (155), Expect = 4.720e-9 Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 3
Query: 291 PCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKM 662
P Y++++F S + ++F+NFY + ITIK+ + + T A W TIL + LM + H+E DAQ WH++ + F+ E+FD + LRI+L SP W L + +
Sbjct: 20 PSRAYYDINFNAKDSG------FNYMLFQNFYVASITIKQYKGENETKAELEKAAN---WKTILPNYKLMNNAHFEGDAQNWHIIGTELFN-EKFDRSDLSVLRIFLNAPSPSWLDFYLKSISV 133
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A6A5BXG1_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BXG1_NAEFO) HSP 1 Score: 62.4 bits (150), Expect = 4.480e-8 Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3
Query: 267 LVRSRHTVPCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQ-YWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGL 647
+V+ + PC Y ++ F P Q + I+FRN+YCSHITIK + Q GT ++T+L LME+ +YE+D+Q Y + +F+ LR Y YQ+SP WK+ L
Sbjct: 14 IVKEQSKRPCLIYQDIKF------EKPTQ-IAFIIFRNYYCSHITIKYKAQN-GT------------FITLLSKYQLMENANYENDSQNYVRINCGKDFNSNYKKDMQFNNLRFYYYQTSPNWKSFCL 121
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A3Q1JBV0_ANATE (Nicolin 1 n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1JBV0_ANATE) HSP 1 Score: 60.8 bits (146), Expect = 3.240e-7 Identity = 30/102 (29.41%), Postives = 54/102 (52.94%), Query Frame = 3
Query: 357 LDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKM 662
++ I F+N+Y +++T++ ++ G A W T+LRD PLM++PH E +Q ++ + + Q +P+ +R+ L Q S W T L +KM
Sbjct: 47 IEEITFKNYYTAYVTVRLLRRLPGQDAPA-------KWCTVLRDLPLMDNPHTEQGSQDYYSLHRTQM---QVEPDHVVSVRLILRQPSSAWLTFSLEEIKM 138
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A2P1N6T8_NAEFO (GS28 n=2 Tax=Naegleria fowleri TaxID=5763 RepID=A0A2P1N6T8_NAEFO) HSP 1 Score: 62.4 bits (150), Expect = 3.810e-7 Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3
Query: 267 LVRSRHTVPCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQ-YWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGL 647
+V+ + PC Y ++ F P Q + I+FRN+YCSHITIK + Q GT ++T+L LME+ +YE+D+Q Y + +F+ LR Y YQ+SP WK+ L
Sbjct: 14 IVKEQSKRPCLIYQDIKF------EKPTQ-IAFIIFRNYYCSHITIKYKAQN-GT------------FITLLSKYQLMENANYENDSQNYVRINCGKDFNSNYKKDMQFNNLRFYYYQTSPNWKSFCL 121
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A665TWE0_ECHNA (Nicolin 1 n=3 Tax=Carangiformes TaxID=1489907 RepID=A0A665TWE0_ECHNA) HSP 1 Score: 60.1 bits (144), Expect = 6.210e-7 Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 3
Query: 357 LDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKM 662
++ I F+N+Y +++T++ ++ G A W T+LRD PLM++PH E +Q ++ + + Q +P+ A +R+ L Q S W L ++K+
Sbjct: 50 IEEITFKNYYTAYVTVRLLRRSPGQDAPA-------KWCTVLRDLPLMDNPHTEGGSQDYYSIHRAQM---QVEPDHVASVRLILRQPSSAWLNFSLENIKI 141
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A6G1PJA9_9TELE (Nicolin-1 Tubulin polyglutamylase complex subunit 5 n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1PJA9_9TELE) HSP 1 Score: 56.2 bits (134), Expect = 1.280e-5 Identity = 28/102 (27.45%), Postives = 52/102 (50.98%), Query Frame = 3
Query: 357 LDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKM 662
++ I F+N+Y +++T++ ++ G + W T+LRD PLME+PH E +Q + + + + +P +R+ L Q S W T L +K+
Sbjct: 50 IEEITFKNYYTAYVTVRLLRRTPGQEVSA-------KWCTVLRDLPLMENPHTERGSQDYFSIHRTQM---RVEPAHVVCVRLILRQPSSAWLTFSLQEIKL 141
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A8J5XP54_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XP54_DIALT) HSP 1 Score: 55.8 bits (133), Expect = 2.490e-5 Identity = 38/125 (30.40%), Postives = 57/125 (45.60%), Query Frame = 3
Query: 345 PVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDP----ESTAPLRIYLYQSSPMWKTLGLHHVKMLSWSRAGAGEDGSLA 707
P RL AI F+N+Y + + + R + A G W L LM+DPH+EDDAQ +H + Q P +S LR+ +Q SP W G ++ ++R + G+LA
Sbjct: 38 PPARLRAITFQNYYSAAVAVHVRGRALPPATDLSGASAS-TWHVALETTQLMDDPHFEDDAQRFHSF---DLTSPQLAPVDVLDSAHALRLTYFQPSPAWADFGAR--RLACFTREDSAAAGALA 156 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig669.42.1 >prot_P-littoralis_Contig669.42.1 ID=prot_P-littoralis_Contig669.42.1|Name=mRNA_P-littoralis_Contig669.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=199bp MGSFSGKKRSPQSIPAFIGPLVRSRHTVPCPTYFEVSFLDSKSKRVPVQRback to top mRNA from alignment at P-littoralis_Contig669:143705..145684+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig669.42.1 ID=mRNA_P-littoralis_Contig669.42.1|Name=mRNA_P-littoralis_Contig669.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1980bp|location=Sequence derived from alignment at P-littoralis_Contig669:143705..145684+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig669:143705..145684+ >mRNA_P-littoralis_Contig669.42.1 ID=mRNA_P-littoralis_Contig669.42.1|Name=mRNA_P-littoralis_Contig669.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig669:143705..145684+ (Pylaiella littoralis U1_48)back to top |