mRNA_P-littoralis_Contig669.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig669.42.1
Unique NamemRNA_P-littoralis_Contig669.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: D7G462_ECTSI (Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G462_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 2.020e-94
Identity = 140/202 (69.31%), Postives = 161/202 (79.70%), Query Frame = 3
Query:  192 LDSSQMGSFSGKKRSPQSIPAFIGPLVRSRHTVPCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKMLSWSRAGAGEDGSLAHSSPRETDGSLGDLCRGISEQVQIFGDKQR 797
            ++SS   +  G   +P  IPAFIGPLVRSR T PCPTYFEVSFL+SK  R P +RLDAIVF+NFYCSHITIK+R+Q+  TA A   GK GDPW+TILRDRPLMEDPH+EDDAQYWHVV ++EFD E++D ESTAP+RIYLYQSSPMWKT GLHHVK + WSRAG+   G       RE DG+LGDLCRGISEQV+IFGDK R
Sbjct:    1 MESSATAAVRGA--NPYPIPAFIGPLVRSRQTTPCPTYFEVSFLESKLPRKPARRLDAIVFKNFYCSHITIKQRRQRFDTATAADCGKDGDPWLTILRDRPLMEDPHHEDDAQYWHVVRSEEFDPEEYDAESTAPIRIYLYQSSPMWKTFGLHHVKAVGWSRAGSSNGG---RDDEREADGNLGDLCRGISEQVKIFGDKHR 197          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A836CPK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.780e-18
Identity = 52/148 (35.14%), Postives = 79/148 (53.38%), Query Frame = 3
Query:  246 IPAFIGPLVRSRHTVPCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAP---------LRIYLYQSSPMWKTLGLHHVKM 662
            +P  +GPLV++R   PC  YFEV+ L  + K+ P   +   VF+N+Y SH+T++ ++         GG      W T+L   PLM DPHYE DAQ+WHV+   +   E  +               +R+ L+QSSP+W+ + L H K+
Sbjct:   15 LPILLGPLVQTRSQRPCLLYFEVTLL--QPKQTPPGAV--FVFQNYYASHVTLRVQR---------GGASDAFDWETVLDRHPLMRDPHYEGDAQHWHVLPLPQRVVELANGNEGGGGEGDGGVRCVRVCLHQSSPLWERVELRHFKL 149          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A0H5QY21_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QY21_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 1.010e-17
Identity = 55/123 (44.72%), Postives = 66/123 (53.66%), Query Frame = 3
Query:  291 PCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTA-PLRIYLYQSSPMWKTLGLHHV 656
            PC  Y E+ F        P   +D IVFRNFYC  +TI +       + A G   G   W TILR   LM DPHYEDDAQY H +++DEF+ E F  E     LR YL Q SP WK+ GL  +
Sbjct:   26 PCLIYQEIQF------SAPAN-IDHIVFRNFYCFALTITQ-------STANGSSDGAPYWTTILRSYKLMTDPHYEDDAQYSHRISSDEFE-EPFSREVPVYALRFYLEQPSPNWKSFGLRDL 133          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A7S3JF62_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JF62_9SPIT)

HSP 1 Score: 64.3 bits (155), Expect = 4.720e-9
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 3
Query:  291 PCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKM 662
            P   Y++++F    S        + ++F+NFY + ITIK+ + +  T A          W TIL +  LM + H+E DAQ WH++  + F+ E+FD    + LRI+L   SP W    L  + +
Sbjct:   20 PSRAYYDINFNAKDSG------FNYMLFQNFYVASITIKQYKGENETKAELEKAAN---WKTILPNYKLMNNAHFEGDAQNWHIIGTELFN-EKFDRSDLSVLRIFLNAPSPSWLDFYLKSISV 133          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A6A5BXG1_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BXG1_NAEFO)

HSP 1 Score: 62.4 bits (150), Expect = 4.480e-8
Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3
Query:  267 LVRSRHTVPCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQ-YWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGL 647
            +V+ +   PC  Y ++ F        P Q +  I+FRN+YCSHITIK + Q  GT            ++T+L    LME+ +YE+D+Q Y  +    +F+           LR Y YQ+SP WK+  L
Sbjct:   14 IVKEQSKRPCLIYQDIKF------EKPTQ-IAFIIFRNYYCSHITIKYKAQN-GT------------FITLLSKYQLMENANYENDSQNYVRINCGKDFNSNYKKDMQFNNLRFYYYQTSPNWKSFCL 121          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A3Q1JBV0_ANATE (Nicolin 1 n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1JBV0_ANATE)

HSP 1 Score: 60.8 bits (146), Expect = 3.240e-7
Identity = 30/102 (29.41%), Postives = 54/102 (52.94%), Query Frame = 3
Query:  357 LDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKM 662
            ++ I F+N+Y +++T++  ++  G  A          W T+LRD PLM++PH E  +Q ++ +   +    Q +P+    +R+ L Q S  W T  L  +KM
Sbjct:   47 IEEITFKNYYTAYVTVRLLRRLPGQDAPA-------KWCTVLRDLPLMDNPHTEQGSQDYYSLHRTQM---QVEPDHVVSVRLILRQPSSAWLTFSLEEIKM 138          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A2P1N6T8_NAEFO (GS28 n=2 Tax=Naegleria fowleri TaxID=5763 RepID=A0A2P1N6T8_NAEFO)

HSP 1 Score: 62.4 bits (150), Expect = 3.810e-7
Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3
Query:  267 LVRSRHTVPCPTYFEVSFLDSKSKRVPVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQ-YWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGL 647
            +V+ +   PC  Y ++ F        P Q +  I+FRN+YCSHITIK + Q  GT            ++T+L    LME+ +YE+D+Q Y  +    +F+           LR Y YQ+SP WK+  L
Sbjct:   14 IVKEQSKRPCLIYQDIKF------EKPTQ-IAFIIFRNYYCSHITIKYKAQN-GT------------FITLLSKYQLMENANYENDSQNYVRINCGKDFNSNYKKDMQFNNLRFYYYQTSPNWKSFCL 121          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A665TWE0_ECHNA (Nicolin 1 n=3 Tax=Carangiformes TaxID=1489907 RepID=A0A665TWE0_ECHNA)

HSP 1 Score: 60.1 bits (144), Expect = 6.210e-7
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 3
Query:  357 LDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKM 662
            ++ I F+N+Y +++T++  ++  G  A          W T+LRD PLM++PH E  +Q ++ +   +    Q +P+  A +R+ L Q S  W    L ++K+
Sbjct:   50 IEEITFKNYYTAYVTVRLLRRSPGQDAPA-------KWCTVLRDLPLMDNPHTEGGSQDYYSIHRAQM---QVEPDHVASVRLILRQPSSAWLNFSLENIKI 141          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A6G1PJA9_9TELE (Nicolin-1 Tubulin polyglutamylase complex subunit 5 n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1PJA9_9TELE)

HSP 1 Score: 56.2 bits (134), Expect = 1.280e-5
Identity = 28/102 (27.45%), Postives = 52/102 (50.98%), Query Frame = 3
Query:  357 LDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHVKM 662
            ++ I F+N+Y +++T++  ++  G   +         W T+LRD PLME+PH E  +Q +  +   +    + +P     +R+ L Q S  W T  L  +K+
Sbjct:   50 IEEITFKNYYTAYVTVRLLRRTPGQEVSA-------KWCTVLRDLPLMENPHTERGSQDYFSIHRTQM---RVEPAHVVCVRLILRQPSSAWLTFSLQEIKL 141          
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Match: A0A8J5XP54_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XP54_DIALT)

HSP 1 Score: 55.8 bits (133), Expect = 2.490e-5
Identity = 38/125 (30.40%), Postives = 57/125 (45.60%), Query Frame = 3
Query:  345 PVQRLDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMEDPHYEDDAQYWHVVTADEFDREQFDP----ESTAPLRIYLYQSSPMWKTLGLHHVKMLSWSRAGAGEDGSLA 707
            P  RL AI F+N+Y + + +  R +    A    G      W   L    LM+DPH+EDDAQ +H     +    Q  P    +S   LR+  +Q SP W   G    ++  ++R  +   G+LA
Sbjct:   38 PPARLRAITFQNYYSAAVAVHVRGRALPPATDLSGASAS-TWHVALETTQLMDDPHFEDDAQRFHSF---DLTSPQLAPVDVLDSAHALRLTYFQPSPAWADFGAR--RLACFTREDSAAAGALA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig669.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G462_ECTSI2.020e-9469.31Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A836CPK3_9STRA6.780e-1835.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0H5QY21_9EUKA1.010e-1744.72Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A7S3JF62_9SPIT4.720e-931.45Hypothetical protein n=1 Tax=Euplotes harpa TaxID=... [more]
A0A6A5BXG1_NAEFO4.480e-833.59Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A3Q1JBV0_ANATE3.240e-729.41Nicolin 1 n=1 Tax=Anabas testudineus TaxID=64144 R... [more]
A0A2P1N6T8_NAEFO3.810e-733.59GS28 n=2 Tax=Naegleria fowleri TaxID=5763 RepID=A0... [more]
A0A665TWE0_ECHNA6.210e-728.43Nicolin 1 n=3 Tax=Carangiformes TaxID=1489907 RepI... [more]
A0A6G1PJA9_9TELE1.280e-527.45Nicolin-1 Tubulin polyglutamylase complex subunit ... [more]
A0A8J5XP54_DIALT2.490e-530.40Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig669contigP-littoralis_Contig669:143705..145684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G462
Model size1013
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.97e-97
EggNOG OGs2EA9C@1|root,2SGHZ@2759|Eukaryota
Ec32 ortholog descriptionnicolin 1
Ec32 orthologEc-02_001420.1
Cds size597
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791391.0100963-UTR-P-littoralis_Contig669:143704..1439101680791391.0100963-UTR-P-littoralis_Contig669:143704..143910Pylaiella littoralis U1_48UTRP-littoralis_Contig669 143705..143910 +
1680791391.0597923-UTR-P-littoralis_Contig669:145474..1456841680791391.0597923-UTR-P-littoralis_Contig669:145474..145684Pylaiella littoralis U1_48UTRP-littoralis_Contig669 145475..145684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791391.023883-CDS-P-littoralis_Contig669:143910..1440421680791391.023883-CDS-P-littoralis_Contig669:143910..144042Pylaiella littoralis U1_48CDSP-littoralis_Contig669 143911..144042 +
1680791391.035921-CDS-P-littoralis_Contig669:144774..1450371680791391.035921-CDS-P-littoralis_Contig669:144774..145037Pylaiella littoralis U1_48CDSP-littoralis_Contig669 144775..145037 +
1680791391.048528-CDS-P-littoralis_Contig669:145272..1454741680791391.048528-CDS-P-littoralis_Contig669:145272..145474Pylaiella littoralis U1_48CDSP-littoralis_Contig669 145273..145474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig669.42.1prot_P-littoralis_Contig669.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig669 143911..145474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig669.42.1

>prot_P-littoralis_Contig669.42.1 ID=prot_P-littoralis_Contig669.42.1|Name=mRNA_P-littoralis_Contig669.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=199bp
MGSFSGKKRSPQSIPAFIGPLVRSRHTVPCPTYFEVSFLDSKSKRVPVQR
LDAIVFRNFYCSHITIKRRQQQRGTAAATGGGKGGDPWVTILRDRPLMED
PHYEDDAQYWHVVTADEFDREQFDPESTAPLRIYLYQSSPMWKTLGLHHV
KMLSWSRAGAGEDGSLAHSSPRETDGSLGDLCRGISEQVQIFGDKQRA*
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mRNA from alignment at P-littoralis_Contig669:143705..145684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig669.42.1 ID=mRNA_P-littoralis_Contig669.42.1|Name=mRNA_P-littoralis_Contig669.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1980bp|location=Sequence derived from alignment at P-littoralis_Contig669:143705..145684+ (Pylaiella littoralis U1_48)
CTTTTTACAGCTACCAGGTATCATTTTAGAGCGATATGGCATCGCTGGTA GAGCAGGCGAGATAACATATACTTCGAGTAAACAACTGCTGTTGTTTGTT CAAGAACAAGAGGGTGGAAGCTTTGGGCGTCTCCCATCGCCGAAGACGTA GTACGTAATATGCAACACGGCTTACACTTTATCTGTGATTTTTAGATTCG TCACAAATGGGGTCATTTTCGGGCAAGAAGCGAAGTCCGCAATCCATACC AGCTTTCATCGGCCCGTTGGTGCGGAGCCGACACACCGTACCGTGCCCGA CTTACTTCGAGGTGTCATTTCTGGACAGCAAGTCAAAGGTGTGTGTGGTA TGTGTGTGTGTTGTGTGTGTATGTTGTCATCCCTTTGATTGGACGCCACT CTACACCTTTCGGGTGGGTAGACGCTCCAACCGGGGTCACACAGGGGGGA AGTCAACACAACAGGAGTTTTTTTTTCTCCACTTCCCTCTCCTGTGCTTG CCTTTTTGGATGAGCTTTTATCTCGAGAAAGGGGACAGCAGTCCCTTTCC CTCGTCGATGCTACGATCGAATTTTGTTTACTCACGAATTGATCGCTTTC CACTTTCACGCGCAATGTGAGAAGAAGCCCAGATCGTGTTGCTGCATTGG GTTTCGAACTCACGTGTGAATGTCAGAAGGTTGCGTGGATAACCAACTGA ACCACCGGGGCGATCGGATCAGTACTTTCTGTATTTGATCCAATCTTGGA GTCTAGTTTGTTGTACCGAGCTCGTTTCCTCGCTCGTGCACAGCGCCACA CCCGCTGAACTCTGTTCTCACTCGTGTCGTTTGCATCATGGCAACGCACG CCGACGTTGTACAGCAGTACGTATGGTGTCACAATGTGCTGGCTAATTTG CTCGTGTCGCTTGAGCGCACACATCAGATATGCGCATCGTTTAAATGTGT GCAAGTACAACAGATGCTGGCTGGAATTTTGTCGTCATGGTTTTTGCTGG ATGGGTTTGGTGCACTCCTCTGCTGACCTCGCCATTATACACCGGGTCTG ACCATATGGCTGTAAACCAGAGAGTACCTGTGCAGAGGCTAGACGCGATC GTGTTCCGGAATTTCTATTGCTCGCACATCACCATCAAGCGGCGCCAACA GCAACGCGGCACAGCAGCAGCTACGGGCGGTGGAAAAGGCGGAGACCCGT GGGTGACTATTTTGCGAGACAGACCTTTGATGGAGGATCCTCACTACGAA GACGATGCACAATACTGGCACGTGGTTACAGCGGACGAGTTTGATAGGGA GCAGTTTGACCCAGAATCAACTGCCCCTCTCAGGTGAGCCAGCCAGCATG TTTTTCTTCACAGGTATGGTGCAGTACAGCGGATGTATCGTCTTGTTCAC CCTCTTTACCCCGGGTTCTAACGACATCATACTCCTAACGCTTCAGGGCT GCGATCCAATAGCACGCTCGGGTGACATATGACCCCCGAGCGTATCATCA CCTAAAATTTGTTTTGTTCCTCCCGTCCCTTACTTGGTGATGAATAATAA CGGATCTTTTATTTCCAGGATCTACCTGTACCAGTCCTCTCCCATGTGGA AGACCCTTGGGTTGCATCACGTGAAAATGCTAAGCTGGTCGAGAGCTGGC GCGGGAGAAGACGGCAGCTTGGCCCACAGCAGTCCGAGAGAGACGGACGG TAGCCTCGGAGACTTGTGCAGGGGCATCAGCGAGCAAGTACAGATCTTCG GCGACAAACAGAGGGCGTAGGCGATTTGTCTTGAACTAACTTTTAGGGAG CTTCCTGTACAAGGGAAAACATGTAGCTGGGGTTTAGCCTTTCCCATGCA GGGCTCTCCTCGTGGTGTTTTTTTCGCGGTCTCCCCGTCGTAAAGTTGTC AGTATCGTCTGGTGGCGATGGTGGGGTGGCTGGCAGCCCCTTGCTTCGGT CGGTACCCGTTGAAATTCGATTGTGGTTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig669:143705..145684+

>mRNA_P-littoralis_Contig669.42.1 ID=mRNA_P-littoralis_Contig669.42.1|Name=mRNA_P-littoralis_Contig669.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig669:143705..145684+ (Pylaiella littoralis U1_48)
ATGGGGTCATTTTCGGGCAAGAAGCGAAGTCCGCAATCCATACCAGCTTT
CATCGGCCCGTTGGTGCGGAGCCGACACACCGTACCGTGCCCGACTTACT
TCGAGGTGTCATTTCTGGACAGCAAGTCAAAGAGAGTACCTGTGCAGAGG
CTAGACGCGATCGTGTTCCGGAATTTCTATTGCTCGCACATCACCATCAA
GCGGCGCCAACAGCAACGCGGCACAGCAGCAGCTACGGGCGGTGGAAAAG
GCGGAGACCCGTGGGTGACTATTTTGCGAGACAGACCTTTGATGGAGGAT
CCTCACTACGAAGACGATGCACAATACTGGCACGTGGTTACAGCGGACGA
GTTTGATAGGGAGCAGTTTGACCCAGAATCAACTGCCCCTCTCAGGATCT
ACCTGTACCAGTCCTCTCCCATGTGGAAGACCCTTGGGTTGCATCACGTG
AAAATGCTAAGCTGGTCGAGAGCTGGCGCGGGAGAAGACGGCAGCTTGGC
CCACAGCAGTCCGAGAGAGACGGACGGTAGCCTCGGAGACTTGTGCAGGG
GCATCAGCGAGCAAGTACAGATCTTCGGCGACAAACAGAGGGCGTAG
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