mRNA_P-littoralis_Contig668.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig668.5.1
Unique NamemRNA_P-littoralis_Contig668.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig668.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig668contigP-littoralis_Contig668:19678..20460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size278
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791388.4926443-CDS-P-littoralis_Contig668:19677..198181680791388.4926443-CDS-P-littoralis_Contig668:19677..19818Pylaiella littoralis U1_48CDSP-littoralis_Contig668 19678..19818 +
1680791388.5089607-CDS-P-littoralis_Contig668:20325..204601680791388.5089607-CDS-P-littoralis_Contig668:20325..20460Pylaiella littoralis U1_48CDSP-littoralis_Contig668 20326..20460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig668.5.1prot_P-littoralis_Contig668.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig668 19678..20460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig668.5.1

>prot_P-littoralis_Contig668.5.1 ID=prot_P-littoralis_Contig668.5.1|Name=mRNA_P-littoralis_Contig668.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MYPTQDNIRTVCELTDDDGFHLRPGVNLGVRIGIIRESLEGDRVVEAFTV
KRYEDEGRAGFELGYVSPHLPYAADFAVRTGVKPHFDLRVNA
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mRNA from alignment at P-littoralis_Contig668:19678..20460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig668.5.1 ID=mRNA_P-littoralis_Contig668.5.1|Name=mRNA_P-littoralis_Contig668.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig668:19678..20460+ (Pylaiella littoralis U1_48)
ATGTATCCAACACAGGACAATATCCGCACGGTATGCGAGTTGACCGACGA
TGATGGTTTTCACCTTAGGCCAGGCGTGAATCTTGGGGTTAGAATCGGGA
TCATCCGAGAAAGCTTGGAAGGTGACAGAGTCGTCGAAGCGGTGAGTCAG
TCACTATACCCGTACATTTCACAACGAAGACAGCAATCTCAGCCCTCTAG
AGCTGCCCATTATTCCCCCTTCGGCCCTGAGCCCGGCTTACAGGCGGGTT
GTCCACAACAAGGAAGTTGTCACCACCGAGCTGTTCGTTGCTCTTGATGA
TGCGGGTTTCATTGTTGCCGTCGCTGATGTTGCCGCTACGGCTGCCGCTG
CTGCTGTTGTACTTGTCCCTGACAGTGTTTGAGGGGGGTGGTAGCGGCAG
TGATATTGCTGCTGTAGCTAATGAAGTCGAAGTTGAAACTATCTTGACCT
TTGCAACCGGCGATATATACTTGCTCACAGTGTTTTTGTTGTTCCTTTCA
CAAACACCACACCCCTGAAACACCGTACACAATTTTATTTATTTCCAGTT
TGATGGCTGTTTTTCCCGCTCACACGCGCAGCAGTCCACAGGACTAACAG
AAATGTTTTCCCACCCTTTCCGCTCCGCTCGCCCATAATGTGTTTCAATT
TACGGTAAAGAGGTACGAAGACGAGGGAAGGGCAGGATTTGAGCTGGGCT
ACGTTTCCCCGCACCTGCCTTACGCAGCAGACTTTGCAGTGCGGACAGGG
GTCAAACCCCACTTCGACTTGAGGGTCAATGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig668:19678..20460+

>mRNA_P-littoralis_Contig668.5.1 ID=mRNA_P-littoralis_Contig668.5.1|Name=mRNA_P-littoralis_Contig668.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig668:19678..20460+ (Pylaiella littoralis U1_48)
ATGTATCCAACACAGGACAATATCCGCACGGTATGCGAGTTGACCGACGA
TGATGGTTTTCACCTTAGGCCAGGCGTGAATCTTGGGGTTAGAATCGGGA
TCATCCGAGAAAGCTTGGAAGGTGACAGAGTCGTCGAAGCGTTTACGGTA
AAGAGGTACGAAGACGAGGGAAGGGCAGGATTTGAGCTGGGCTACGTTTC
CCCGCACCTGCCTTACGCAGCAGACTTTGCAGTGCGGACAGGGGTCAAAC
CCCACTTCGACTTGAGGGTCAATGCC
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