mRNA_P-littoralis_Contig668.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig668.3.1
Unique NamemRNA_P-littoralis_Contig668.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig668.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig668contigP-littoralis_Contig668:13749..16636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size506
Hectar predicted targeting categoryother localisation
Exons5
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791388.2602382-CDS-P-littoralis_Contig668:13748..138751680791388.2602382-CDS-P-littoralis_Contig668:13748..13875Pylaiella littoralis U1_48CDSP-littoralis_Contig668 13749..13875 +
1680791388.2717552-CDS-P-littoralis_Contig668:14409..145011680791388.2717552-CDS-P-littoralis_Contig668:14409..14501Pylaiella littoralis U1_48CDSP-littoralis_Contig668 14410..14501 +
1680791388.2821615-CDS-P-littoralis_Contig668:15075..151351680791388.2821615-CDS-P-littoralis_Contig668:15075..15135Pylaiella littoralis U1_48CDSP-littoralis_Contig668 15076..15135 +
1680791388.2950578-CDS-P-littoralis_Contig668:16046..162471680791388.2950578-CDS-P-littoralis_Contig668:16046..16247Pylaiella littoralis U1_48CDSP-littoralis_Contig668 16047..16247 +
1680791388.307869-CDS-P-littoralis_Contig668:16610..166341680791388.307869-CDS-P-littoralis_Contig668:16610..16634Pylaiella littoralis U1_48CDSP-littoralis_Contig668 16611..16634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig668.3.1prot_P-littoralis_Contig668.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig668 13749..16634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig668.3.1

>prot_P-littoralis_Contig668.3.1 ID=prot_P-littoralis_Contig668.3.1|Name=mRNA_P-littoralis_Contig668.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp
VHPEWRLLVLSAREFVTPRWLGAASRSGFWDQAARQAMKILEGRMFDGHG
RAGGGHVVGSMFIASTSSGSQINAERRFAGRGYKGSKFEALLRAVRSGLA
VSRTPAAGDGRDLVVWAGGGMFSAATTAAVVTASTAAAAAAAAAAVREEG
GAGGGEPMYQIRTAEAIS
back to top

mRNA from alignment at P-littoralis_Contig668:13749..16636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig668.3.1 ID=mRNA_P-littoralis_Contig668.3.1|Name=mRNA_P-littoralis_Contig668.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2888bp|location=Sequence derived from alignment at P-littoralis_Contig668:13749..16636+ (Pylaiella littoralis U1_48)
GTACACCCCGAGTGGAGGCTCCTTGTCCTTTCAGCTCGAGAGTTTGTGAC
ACCACGCTGGCTTGGCGCGGCGTCGAGGTCGGGTTTTTGGGATCAGGCTG
CCCGGCAAGCGATGAAGATTTTAGAAGGTGAGACTTTCGACGTACTGACT
GATATTCCAATGCCTCAACCGGTGCAATCGTGTTGCTTATTTCGCAGGCA
AACTTACACTTCAACATTGGTTTCTTGATATGGAGAGGTATTTCACGGAA
TGGAGCACTGCTCGTGCACGACTGTTATTTCGTATATATGTCGTACAAGG
TGCGCATAGAACGAATTGCGCAAACCCTGTGTGTAGCTTAAAATAAACGA
AAGCGTAACTCGCGCCGAGTTTGGCGAGGTACAGAATAGGGTAAGCCCTG
CCGAGCTACCTCTAGTGGGCATTGTTGTCGGCGATTCTTTTTGGTTCTGA
TGTTTGTGATGGCGGTCGCAGTGGTCATTCTCCGCCCGTCATCAGTATGC
AAAAACACGCTGATTGCACGCAACTAGCGGTCGCTTTCGCGATCGCAACC
GTTTGGAACACTCCGGATGATCGTCCTTGTAGTATATTGTTATCATATCA
TCGATGGTATCTCCATCGGCACCGAAATATCGATTTTTCGTCTAAACTAT
CCCTTGATCAGGCCGGATGTTTGATGGCCATGGACGTGCGGGTGGGGGGC
ACGTCGTCGGCAGCATGTTCATCGCAAGCACAAGTTCTGGCTCGCAGATC
AATGTGAGTGTAGACAACTGCGTCTCCCTTTCACGCCGTAAAATGAAACC
GTTGCGAAATCGACATTTGGTTCTTGAAGGTTATACTTCGAAGTACGTTT
TATGGTGGCGGCGGGGGTGCGCTAGGTTGTGATGACTGGTGGAATAACGC
ACGCAGAACAGCGATCCCTGTAGGCATTGTCAAGCGATTGGCCGCTTAGA
GAGGGCACCGGAAGGACAAGTAATGCCGCATCCGGGTTTCCATTTAGGAT
AGAGCAAACCATGTTCCACGACAGAGGTGCTTCAGGTGATCCATGACCGT
ACATGGAGGTGATGAAAACATCGATTTCTGGTGACTACACGCATTTCAGA
TATTGAATGCCACACTTAGTTTGGACGTTCCAATCCGACAGGTCAAGAGG
CAACGCCAAGATTTATTGAAAGCCTCCGCACCAAATGGAAACCCACAGAA
GGAGGATCTTTGCTGGCAGACAGACTTTATGTTCCAAACGATACGGTTAC
GGTCGTACACATCAATCTTGCTCAACTTCCCAGCGATTTGTTGGCGCTGC
ATTCCTTGACTCCTGTCTTGTCTTCAGGCGGAACGTCGCTTTGCCGGAAG
GGGGTACAAGGGCAGCAAGTTTGAGGCTCTTCTACGGGTAAGCCGCACCC
AGGTTTTAATGGCTAGTTCCCTTGAGCTTGCAAAATGGAACAGGAGTGTT
GCGTTAAAGGGTGGTGACCATCTCCGCCTAAGCATCCTGATTTTCCCGCC
ATTACGCAGTCCACGGGGCGTAATTTGAAACACTCGATTAACATCAACAA
AATGGTAATGACGCTCTGCCAGCATTGATTGAAGCATGTGAATGCACGTT
GCCAAATATTTGAATACGTTGACAGAACTTCCAACGCGGCAAAAACCAAA
CGTACGTGTGTTCGAATCAAAATGCTGCCTTGCTTGTTCGTTGGTGTAAG
TATTATTCAAGAATAAGGCTCGAGTTGCGGAGCACTCATGTTTGTCGTAA
GGCATGGCTCGCATCGATTCACTGCCTGGTTTGTTGTTTGGCGCAGTGCA
ATGAGTTGCCGTAACGACCTTTATGATTCTCGTTGCGACTGAGTGAGACC
ACGTTTGCGCCAACCATACAAATTGGAGAAGGCTTTGGCTCCCCTGGTCG
ATAGTTTGCCCAGGAAATAGAACGAGCAAATCATCAATTGAATGCCACCG
AGCTAATTTCAAAGGCCAGTCTCCCCTTCCCTTTTCATGAAAATATGAAA
GATGGAATTTCTACTTCTTCATGAGTGTTGTTTTCAGAGCAACGATAGGA
GCGCGTTGTCAGTATACTCAGCAGAGGTAAGGCACTGCGGACGCACCATG
CCCGTCTCTTGGTAAATTTACATTGTATGGAAACCTTTTGTTTACTTCAT
TACCGAAAACCTTCGTCACGGAGAGCGATCTCAACGGTTCCATGTAAGCT
TGCGACTAAATCAAACGCCCCAAGTTGTCGTAGAGTCAACGCGTGGAACG
CCCTCAAACCCTAGTACGGTAACATCCCACTCGTCGCGTGCATGACAGGC
CGTACGTTCGGGGCTTGCGGTGTCGAGGACTCCTGCCGCTGGTGACGGTC
GAGATCTCGTGGTGTGGGCAGGTGGCGGGATGTTCTCGGCGGCGACTACA
GCCGCTGTTGTCACTGCTTCTACCGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGTTCGCGAGGAAGGGGGCGCCGGTGGAGGAGAGCCAATGTATCAGG
TAAGCGAATCAGTTGGGGTTTGCATTGGAAGTCGATCACGCATGGCTATG
ACCATATCGCTGCAGTTCGGACGTGTCGGAACAACACATCAAGAGCAGAG
GCGACCCTTTGCGAGGCCAGGTGGGGAAAAAGCTTTGATGTTGTCAAGGT
TTCACAATATGCAAGAGCCCTTCGTCGCACTCAGTTTCTGGATCATTATT
TTCTGCGAACATTTGAGCCAAATCAACACGATGACGAGAACCTACTTAGT
GTGCAGTTCGGCTCAGTACTTTTGACACACTCAGATCGTCTCCACCCCCC
TTGTGACGTTTTATCGCCACCAAATTCCCAACTTTGTTCGGTTGACAATG
CACGACGACCAGATTCGGACCGCTGAGGCCATCTCAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig668:13749..16636+

>mRNA_P-littoralis_Contig668.3.1 ID=mRNA_P-littoralis_Contig668.3.1|Name=mRNA_P-littoralis_Contig668.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig668:13749..16636+ (Pylaiella littoralis U1_48)
GTACACCCCGAGTGGAGGCTCCTTGTCCTTTCAGCTCGAGAGTTTGTGAC
ACCACGCTGGCTTGGCGCGGCGTCGAGGTCGGGTTTTTGGGATCAGGCTG
CCCGGCAAGCGATGAAGATTTTAGAAGGCCGGATGTTTGATGGCCATGGA
CGTGCGGGTGGGGGGCACGTCGTCGGCAGCATGTTCATCGCAAGCACAAG
TTCTGGCTCGCAGATCAATGCGGAACGTCGCTTTGCCGGAAGGGGGTACA
AGGGCAGCAAGTTTGAGGCTCTTCTACGGGCCGTACGTTCGGGGCTTGCG
GTGTCGAGGACTCCTGCCGCTGGTGACGGTCGAGATCTCGTGGTGTGGGC
AGGTGGCGGGATGTTCTCGGCGGCGACTACAGCCGCTGTTGTCACTGCTT
CTACCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCGCGAGGAAGGG
GGCGCCGGTGGAGGAGAGCCAATGTATCAGATTCGGACCGCTGAGGCCAT
CTCA
back to top