mRNA_P-littoralis_Contig666.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.58.1
Unique NamemRNA_P-littoralis_Contig666.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 7.190e-57
Identity = 84/140 (60.00%), Postives = 107/140 (76.43%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVLKGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAKDEGIVLP-GWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFRIMKRDYNPIWDRC 546
            M L+ V PLPL ++ Y + ++EL+L G G ++ +LL H+QN+C VYACLAVKRNAGIV T  ++ AAAKGYK+IAVPGFF+W K+ GIV+   WLT + MGRT+L G PVLF DGKKLW RFD+  R MK+ YN +WDRC
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLELLLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRC 143          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 4.230e-44
Identity = 76/139 (54.68%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVLKGYGK-NKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAKDEGIVLPGWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFRIMKRDYNPIWDR 543
            +N+++V+PLPL Y+ Y +TS+ L L+       KQ +  +QN+C VY+CLAVKRNAG+VGT  + AAAA+GY+EIAVPGFFRWA+D  I  P  LTM  +G T+ +G PVL+ +GKKLW++FD A   MK+  NPIWDR
Sbjct:    3 INVDEVLPLPLVYNDYVKTSINLALENKKLFTLKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKRIGATSTDGAPVLYTNGKKLWTKFDAAMLKMKKFCNPIWDR 141          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 4.890e-43
Identity = 76/147 (51.70%), Postives = 98/147 (66.67%), Query Frame = 1
Query:  130 MNLEK---VMPLPLNYSAYTQTSVELVL--KGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAK-----DEGIVLPGWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFRIMKRDYNPIWD 540
            MN +K   V  LPL +++Y +T + ++   +  G    +LL H+QN+C VYACL VKRNAGIV T  +HAAAAKGYK+IAV GFF+W K     D+    P WLT + MGRT++ GD VLF  GKKLW RFD   R +K+ YNP+WD
Sbjct:    1 MNAKKRDGVQSLPLEFNSYAETVISMLRDRRSSGLTDAKLLKHLQNVCIVYACLTVKRNAGIVSTQAKHAAAAKGYKDIAVLGFFKWLKENLEADQYFSQP-WLTFEVMGRTSMSGDAVLFTHGKKLWKRFDNIMRALKKFYNPVWD 146          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 7.360e-37
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVLKGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAKDEGIVLP-GWLTMDFMGRTTLEG 447
            M L+ V PLPL ++ Y + ++EL+L G G ++ +LL H+QN+C VYACLAVKRNAGIV T  ++ AAAKGYK+IAVPGFF+W K+ GIV+   WLT + MGRT+L G
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLELLLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 6.140e-36
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVLKGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAKDEGIVLP-GWLTMDFMGRTTLEG 447
            M L+ V PLPL ++ Y + ++EL+L G G ++ +LL H+QN+C VYACLAVKRNAGIV T  ++ AAAKGYK+IAVPGFF+W K+ GIV+   WLT + MGRT+L G
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLELLLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5K5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 9.990e-32
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVL-KGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAKD----EGIVLPGWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFR 507
            M L+ V  LPL +++Y +  + ++  +  G    +LL H+QN C VYACLAVKRNAGIV T  RHAAAA+GYK+IAVPGF +  ++    E   L  WLT + MG+++++G  VLF DG+KLW RFD+  R
Sbjct:  228 MKLDGVQSLPLKFNSYAEAVISMLRDRSSGLTDAKLLKHLQNGCIVYACLAVKRNAGIVSTQARHAAAAQGYKDIAVPGFIKRLQENLDKEDFFLQPWLTCEVMGKSSMKGGAVLFTDGEKLWKRFDKILR 358          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5JPS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.390e-31
Identity = 64/131 (48.85%), Postives = 89/131 (67.94%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVL-KGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAKD----EGIVLPGWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFR 507
            M L+ V  LPL +++Y +T V ++  +  G    +LL H+QN   VYACLAVKRNAGIV T  +HAAAA+GYK+IAVP FF+W ++    E   L  WLT + MG+T+++G  VLF +G+K+W RFD+  R
Sbjct:  400 MKLDGVQSLPLEFNSYAETVVSMLRDRSSGLTDAKLLKHLQNGRIVYACLAVKRNAGIVSTQAKHAAAAQGYKDIAVPSFFKWLQENLDKEDSFLQPWLTFEVMGKTSMKGGAVLFTNGEKMWKRFDKILR 530          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.090e-28
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVL-KGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAKD----EGIVLPGWLTMDFMGRTTLEG 447
            M L+ V  LPL +++Y +T + ++  +  G    +LL H+QN+C VYACLAVKRNAGIV T  +HAAA +GYK+IAVPGFF+W ++    E   L  WLT + MG+T+++G
Sbjct:    4 MKLDGVQSLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAPQGYKDIAVPGFFKWLQENLDKEDFFLQLWLTFEVMGKTSMKG 114          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.210e-28
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVL--KGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAK-----DEGIVLPGWLTMDFMGRTTLEG 447
            M L+ V  LPL +++Y +T + ++   +  G    +LL H+QN+C VYACLAVKRNAGIV T  +HAA AKGYK+IAVPGFF+W K     D+    P WLT + MGRT++ G
Sbjct:    4 MKLDGVQSLPLEFNSYAETVISMLRDKRSSGLTDTKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAVAKGYKDIAVPGFFKWLKENLEADQYFSQP-WLTFEVMGRTSMSG 115          
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Match: A0A6H5JF32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF32_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 9.290e-27
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  130 MNLEKVMPLPLNYSAYTQTSVELVL-KGYGKNKKQLLTHMQNICTVYACLAVKRNAGIVGTTVRHAAAAKGYKEIAVPGFFRWAKD----EGIVLPGWLTMDFMGRTTLEG 447
            M L+ V  LPL +++Y +T + ++  +  G    +LL  +QN+C VYACLAVKRNAG+V T  +HA AA+GYK+IAVPGFF+W ++    E   L  WLT + MG+T+++G
Sbjct:    4 MKLDGVQSLPLKFNSYAETVISMLRDRSSGLTDAKLLKPLQNVCIVYACLAVKRNAGMVFTQAKHATAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFEVMGKTSMKG 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JUY9_9PHAE7.190e-5760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L481_9PHAE4.230e-4454.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FPI6_ECTSI4.890e-4351.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDP2_9PHAE7.360e-3757.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZP4_9PHAE6.140e-3657.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X3_9PHAE9.990e-3248.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPS0_9PHAE1.390e-3148.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ8_9PHAE1.090e-2848.65Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR6_9PHAE1.210e-2850.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF32_9PHAE9.290e-2746.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:154202..155412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size562
Hectar predicted targeting categoryother localisation
Exons2
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791387.0633137-CDS-P-littoralis_Contig666:154201..1546491680791387.0633137-CDS-P-littoralis_Contig666:154201..154649Pylaiella littoralis U1_48CDSP-littoralis_Contig666 154202..154649 +
1680791387.1280522-CDS-P-littoralis_Contig666:155299..1554121680791387.1280522-CDS-P-littoralis_Contig666:155299..155412Pylaiella littoralis U1_48CDSP-littoralis_Contig666 155300..155412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.58.1prot_P-littoralis_Contig666.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 154202..155412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.58.1

>prot_P-littoralis_Contig666.58.1 ID=prot_P-littoralis_Contig666.58.1|Name=mRNA_P-littoralis_Contig666.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
IGSQEAFGFKIQIFGARAAPSRDGARSTTRSVTARTEQHRAQTMNLEKVM
PLPLNYSAYTQTSVELVLKGYGKNKKQLLTHMQNICTVYACLAVKRNAGI
VGTTVRHAAAAKGYKEIAVPGFFRWAKDEGIVLPGWLTMDFMGRTTLEGD
PVLFQDGKKLWSRFDEAFRIMKRDYNPIWDRCDGVL*
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mRNA from alignment at P-littoralis_Contig666:154202..155412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.58.1 ID=mRNA_P-littoralis_Contig666.58.1|Name=mRNA_P-littoralis_Contig666.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1211bp|location=Sequence derived from alignment at P-littoralis_Contig666:154202..155412+ (Pylaiella littoralis U1_48)
ATAGGATCCCAAGAGGCGTTTGGGTTTAAAATTCAAATATTTGGAGCGCG CGCAGCACCCTCTCGGGATGGAGCACGAAGCACGACGCGCAGTGTCACAG CTAGAACAGAGCAGCATCGCGCACAAACCATGAATCTCGAAAAGGTGATG CCCCTCCCGCTGAACTACTCGGCGTACACCCAGACCTCTGTCGAGCTTGT GTTAAAAGGCTACGGAAAGAACAAGAAACAACTGCTGACGCATATGCAGA ACATCTGCACGGTGTACGCGTGCTTGGCGGTGAAACGCAACGCGGGGATT GTGGGCACCACGGTGAGACATGCTGCTGCCGCGAAGGGTTACAAGGAGAT TGCCGTGCCAGGATTCTTCAGGTGGGCGAAAGACGAGGGCATCGTGCTTC CTGGGTGGCTCACTATGGATTTCATGGGACGCACTACACTGGAGGGAGGT GAGAAAAAACCAAAATGTATTGTATGTGAACGATACAACAACAGCAGTAG ATCCTCTGCCCGTACAGCTGAAGTGCAGATCTTCTGCCCGCACAGCAGGT GTGTGTCTGTGTGTGTTGTCATCCCATCATTTCTGGGCGCCGGTCTACAC CTTTCGGTATAAAGTGGGTGCATCAGCCGGGGTCACACAGGAGGAAGGTC ACGCACGAGCTTTTTATATTTTATTTGATTTATTGTACACACCTTTCCTC TTGCGGTACGTGCCTTTGATTTTTAATGCAAGTGGGTATACTTCGAAACA TACGATACATATCATGTGACAGTTCTTCCTACCTATCTACAGCAGTGCGT CTCTTGTTGCCGTGTAGCAGCAGTCCCTGTGGCGTTTACGAGTAGTCGAT ATTCTGCCTAGGCTACATCAGTACTAGTATGGTTTACCTCTGCTGTAGGT AGGACAATCTTGTTCATGTCTTCATCGAGTGGTCCGCCGGTTGCGAAAAG TACTCACACCACAACGAACCATCTCCCCAGCATTAGAATTGATGTCGGCG CCGTTGTGCGTTTTTGCTGCTGCTGCGGCGCAAGCGCATTTTAtTGAAAG AGTGCCCGCTGACGGTAATATCCTGGTTGTATCTGTCGTGCTTCGCAGAT CCGGTTCTCTTCCAAGACGGGAAGAAGCTGTGGAGTCGGTTCGACGAGGC GTTTCGCATAATGAAGCGGGACTACAACCCCATCTGGGACAGGTGCGATG GGGTGTTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig666:154202..155412+

>mRNA_P-littoralis_Contig666.58.1 ID=mRNA_P-littoralis_Contig666.58.1|Name=mRNA_P-littoralis_Contig666.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig666:154202..155412+ (Pylaiella littoralis U1_48)
ATAGGATCCCAAGAGGCGTTTGGGTTTAAAATTCAAATATTTGGAGCGCG
CGCAGCACCCTCTCGGGATGGAGCACGAAGCACGACGCGCAGTGTCACAG
CTAGAACAGAGCAGCATCGCGCACAAACCATGAATCTCGAAAAGGTGATG
CCCCTCCCGCTGAACTACTCGGCGTACACCCAGACCTCTGTCGAGCTTGT
GTTAAAAGGCTACGGAAAGAACAAGAAACAACTGCTGACGCATATGCAGA
ACATCTGCACGGTGTACGCGTGCTTGGCGGTGAAACGCAACGCGGGGATT
GTGGGCACCACGGTGAGACATGCTGCTGCCGCGAAGGGTTACAAGGAGAT
TGCCGTGCCAGGATTCTTCAGGTGGGCGAAAGACGAGGGCATCGTGCTTC
CTGGGTGGCTCACTATGGATTTCATGGGACGCACTACACTGGAGGGAGAT
CCGGTTCTCTTCCAAGACGGGAAGAAGCTGTGGAGTCGGTTCGACGAGGC
GTTTCGCATAATGAAGCGGGACTACAACCCCATCTGGGACAGGTGCGATG
GGGTGTTGTGA
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