mRNA_P-littoralis_Contig666.56.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.56.2
Unique NamemRNA_P-littoralis_Contig666.56.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: D8LBQ0_ECTSI (Peroxisomal enoyl-coenzyme A hydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBQ0_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 2.890e-117
Identity = 200/282 (70.92%), Postives = 214/282 (75.89%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTNFEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAP--------------------------------SRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDLGTAMRAAAPSSAARKPASEPKKKSR---GAGASAGSRPRFSKL 742
            GDHFSAGLDL+DTTNF+AIG+AT DVARRAFRFR+LALAMQESF+AVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDA FC+AEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEA+RMGFVSRVV     A                                   S++A+VV AS+  ASEIA+QSPVAVFGTKRNL+YARDH V DGLEYAATWSGAALQA DL TAMRAAA           PK+  R   GAGA AGS P FSKL
Sbjct:   61 GDHFSAGLDLSDTTNFDAIGRATKDVARRAFRFRKLALAMQESFTAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDAGFCVAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEASRMGFVSRVVAAPEAATXXXXXXXXXXXXTAGGKPRAVXXXXXXXXXXXRRSQRAEVVAASILTASEIARQSPVAVFGTKRNLLYARDHSVVDGLEYAATWSGAALQAGDLSTAMRAAA---------GNPKRSGRREAGAGAEAGSHPHFSKL 333
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: A0A6P8I096_ACTTE (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I096_ACTTE)

HSP 1 Score: 213 bits (543), Expect = 1.290e-64
Identity = 118/214 (55.14%), Postives = 149/214 (69.63%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTN-FEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDLGTAMRA 640
            G  F+AGLDL D    F   G    D AR+A   R++ L+ QESFS +E+CP+PVIAAIH AC+GG VDL CACDIRLCS DA F I EV +GLAADVGTLQR+PKIVGN+SL REL+YT R   A EA   G VS +         P +++ ++ A+ AMAS+IA +SPVAV GTK NL Y+RDH V++GL Y ATW+ + LQ +D+  A++A
Sbjct:  106 GKIFTAGLDLMDMAGVFMQAGPENADAARKAAELRKIILSYQESFSVIEKCPKPVIAAIHSACIGGGVDLVCACDIRLCSSDAWFQIKEVDIGLAADVGTLQRLPKIVGNDSLVRELSYTARRLPANEAKEAGLVSHIY--------PDKES-LISAATAMASKIASKSPVAVMGTKHNLNYSRDHSVEEGLNYMATWNMSMLQTEDIMKAVQA 310
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: UPI001F04F430 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F430)

HSP 1 Score: 209 bits (532), Expect = 3.870e-63
Identity = 114/213 (53.52%), Postives = 149/213 (69.95%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTNFEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDLGTAMRA 640
            G  F+AGLDL D ++   + +   DV+R+A+  R+  +  QESFS +ERCPQPVIAAIH ACVGG VD+ C+CDIR C+ DA F I EV++GLAADVGTLQR+PKIVGNESL REL +T R F A EA   G VSR+            +  ++  +L +AS IAK SP+A+ GTK+NL Y+RDHGVD+ LEY ATW+ + LQ +D+  A++A
Sbjct:   94 GKIFTAGLDLMDFSSI-VLQQDDKDVSRKAYNMRKTIVQCQESFSVIERCPQPVIAAIHSACVGGGVDMICSCDIRWCTSDAWFQIKEVELGLAADVGTLQRLPKIVGNESLVRELCFTARKFMAEEAKSFGLVSRIF---------QDKESLLNGALDLASHIAKMSPIAITGTKKNLNYSRDHGVDESLEYMATWNMSMLQTEDILKAVQA 296
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: A0A7D9IU21_PARCT (Delta(3,5)-Delta(2,4)-dienoyl- isomerase, mitochondrial n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IU21_PARCT)

HSP 1 Score: 207 bits (527), Expect = 2.530e-62
Identity = 114/213 (53.52%), Postives = 145/213 (68.08%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTNFEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDLGTAMRA 640
            G  F+AGLDL D  +     +   DV+RRA+  R+  L  QESFS +E+CPQPVIAAIH ACVGG VD+ CACDIR C+ DA F + EV++GLAADVGTLQR+PKIVGNESL REL YT R   + EA   G VSR+            +  +++++L +AS IAK SPVAV GTK NL Y+RDH VD+ LEY A+W+ + LQ  D+  A++A
Sbjct:   98 GKIFTAGLDLMDMASVIMSQQDDQDVSRRAYNMRKTILQFQESFSVIEKCPQPVIAAIHSACVGGGVDMICACDIRWCTSDAWFQVKEVELGLAADVGTLQRLPKIVGNESLVRELCYTSRKLMSEEAKSFGLVSRIF---------QDRESLIDSALDLASHIAKMSPVAVSGTKHNLNYSRDHPVDESLEYIASWNMSMLQTDDILKAVQA 301
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: UPI00106D6319 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D6319)

HSP 1 Score: 205 bits (521), Expect = 1.750e-61
Identity = 114/213 (53.52%), Postives = 146/213 (68.54%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTNFEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDLGTAMRA 640
            G  F+AGLDL D  +   + +   DV+R+A+  R   L  QESFS +E+CPQPVIAAIH ACVGG VD+ CACDIR C+ DA F + EV++GLAADVGTLQR+PKIVGNESL REL YT R F A EA   G VSR+            +  ++E +L +AS IAK SP+AV GTK NL Y+RDH VD+ L+Y A+W+ + LQ +D+  A++A
Sbjct:   94 GKIFTAGLDLMDFASL-FMSQDGQDVSRKAYNLRNSILKFQESFSVIEKCPQPVIAAIHSACVGGGVDMVCACDIRWCTSDAWFQVKEVELGLAADVGTLQRLPKIVGNESLVRELCYTCRKFMAEEAKSFGLVSRIF---------QDKESLIEGALDLASHIAKMSPIAVSGTKHNLNYSRDHPVDESLKYIASWNMSMLQTEDIIKAVQA 296
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: A0A1W0XB33_HYPDU (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0XB33_HYPDU)

HSP 1 Score: 204 bits (520), Expect = 5.180e-61
Identity = 110/215 (51.16%), Postives = 145/215 (67.44%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTNFEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDLGTAMRAAA 646
            G HF AG+DL+D  +  +I     D AR+ F+FR L  ++Q +F+A+E CP+PVIAAIHG C+G  VD+  ACDIR C+ DA F I EV +G+AADVGTLQR PKIVGN+SL RE A TGR F A+EA+++GFVSR             +A ++  +L +A +IA +SPVA+  TK NL Y+RDH V +GL+    W G ALQ +DL TA  A+A
Sbjct:  116 GKHFCAGIDLSDIADLTSIIGTDSDPARKGFQFRSLVRSLQATFNAIEECPKPVIAAIHGGCIGAGVDMTSACDIRYCTHDAFFSIKEVDIGMAADVGTLQRFPKIVGNDSLVREFALTGRNFSASEASKIGFVSRTF---------DSRASMMSLALDVAKKIASKSPVAIQSTKINLNYSRDHSVHEGLQNQINWQGFALQTEDLMTAAMASA 321
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: UPI001B887ADC (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887ADC)

HSP 1 Score: 203 bits (517), Expect = 6.390e-61
Identity = 111/207 (53.62%), Postives = 147/207 (71.01%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTNFEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDL 622
            G  F+AG+DL D        ++  DV R+AF  ++   A QE+FS +E+CP+PVIAAIH AC+GG +D+  ACDIR CS+DA F I E+ VGLAADVGTLQR PKIVGN+SL RELAYT R F A EA +MGF+SR+         P ++  +V+++L +AS IA +SPVAV GTK +LV++RDH V +GLE+ A W+ A LQ++DL
Sbjct:   90 GKMFTAGIDLTDLDGLVGTLQSKMDVGRKAFVAKKTIKAYQETFSVIEKCPKPVIAAIHNACIGGGIDMTSACDIRYCSQDAWFQIKEIDVGLAADVGTLQRFPKIVGNDSLTRELAYTARKFYADEAKQMGFISRIF--------PDKET-MVQSALDVASLIASKSPVAVQGTKVSLVFSRDHSVPEGLEHIAMWNQAMLQSEDL 287
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: UPI00109BEF07 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BEF07)

HSP 1 Score: 203 bits (517), Expect = 7.390e-61
Identity = 116/215 (53.95%), Postives = 150/215 (69.77%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTN--FEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDLGTAMRA 640
            G  F+AGLDL +      ++ G    D++R+A + R + L  QESF+ +++C +PVIAAIH ACVGG VD+ CACDIRLCS DA F + EV++GLAADVGTLQR+PKI+GNESL REL YT R F A EA   G VS +         P R++ +V A+L MAS IAK SPVAV GTK NL Y+RDHGVD+ L Y ATW+ + LQ++D+  A++A
Sbjct:   94 GKIFTAGLDLMEMAGVLMQSTG-GDQDISRKAAKLRDVVLQYQESFTVIDKCSKPVIAAIHSACVGGGVDMICACDIRLCSADAWFQVKEVELGLAADVGTLQRLPKIIGNESLVRELCYTARRFLAHEAKDAGLVSHIY--------PDRES-LVSAALNMASTIAKMSPVAVMGTKHNLNYSRDHGVDEALNYIATWNMSMLQSEDILKAVQA 298
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: A0A2B4RA31_STYPI (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RA31_STYPI)

HSP 1 Score: 203 bits (516), Expect = 1.470e-60
Identity = 113/207 (54.59%), Postives = 143/207 (69.08%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTNFEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDL 622
            G  F+AGLDL D  +        P  +RRA   R+L L +Q+SF  +E+CPQPVIAA H ACVGG VD+ C+CDIRLCS DA F I E+ +GLAAD+GTLQ+ PKI+GN+SL REL +TGR F A EA + GFVSRV        +P R + V EA L +A +IAK+SPVA+ GTK NL ++RDH   +GLEY ATW+ A LQ +D+
Sbjct:  109 GKIFTAGLDLMDMGSNLMSSDLEP--SRRAHLLRKLILFLQDSFRTIEKCPQPVIAAFHSACVGGGVDMICSCDIRLCSSDAWFQIKEIDIGLAADLGTLQKFPKIIGNDSLARELCFTGRRFTAEEALQFGFVSRV--------SPGRDSLVKEA-LELAGQIAKKSPVAMAGTKHNLNFSRDHSAQEGLEYMATWNMAMLQTEDI 304
[Close]
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Match: A0A6P4Y9I2_BRABE (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isoform X1 n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Y9I2_BRABE)

HSP 1 Score: 201 bits (512), Expect = 3.710e-60
Identity = 112/213 (52.58%), Postives = 151/213 (70.89%), Query Frame = 2 
Query:    2 GDHFSAGLDLADTTNFEAIGKATPDVARRAFRFRRLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVGPAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDDGLEYAATWSGAALQAQDLGTAMRA 640
            G  F+AGLDL DT +   +  A  D+AR+A R        QE+FS +E+CP+PVIAA+H ACVGG VDL  ACDIRLC++DA F I EV +GLAADVGTLQR+PK++GN+SL RELA+T R F A EA +MG VSR+         P R+A ++E +L +AS IA +SP+AV GTK ++VY+RDH V +GL++ A W+   LQ++D+  A++A
Sbjct:   93 GKIFTAGLDLGDTMSSLFVEGA--DIARKAIRLGPKIRQYQETFSVIEKCPKPVIAAVHSACVGGGVDLITACDIRLCTQDAWFQIKEVDIGLAADVGTLQRLPKVIGNDSLARELAFTSRRFEAEEAKQMGLVSRIY--------PDREA-LLEGALELASTIASKSPIAVQGTKVSMVYSRDHPVQEGLDHVALWNSTMLQSEDVVEAVQA 294
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.56.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBQ0_ECTSI2.890e-11770.92Peroxisomal enoyl-coenzyme A hydratase n=2 Tax=Ect... [more]
A0A6P8I096_ACTTE1.290e-6455.14delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
UPI001F04F4303.870e-6353.52delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A7D9IU21_PARCT2.530e-6253.52Delta(3,5)-Delta(2,4)-dienoyl- isomerase, mitochon... [more]
UPI00106D63191.750e-6153.52delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A1W0XB33_HYPDU5.180e-6151.16Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
UPI001B887ADC6.390e-6153.62delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
UPI00109BEF077.390e-6153.95delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A2B4RA31_STYPI1.470e-6054.59Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A6P4Y9I2_BRABE3.710e-6052.58delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:148617..151861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBQ0
Preferred nameECH1
PFAMsECH_1
Model size795
Max annot lvl2759|Eukaryota
KEGG koko:K12663
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016853,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0031907,GO:0031974,GO:0032787,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051750,GO:0055114,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:1901575
Exons3
Evalue1.15e-91
EggNOG OGsKOG1681@1|root,KOG1681@2759|Eukaryota
Descriptiondelta3,5-delta2,4-dienoyl-CoA isomerase activity
Cds size627
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791386.9595869-UTR-P-littoralis_Contig666:148616..1486661680791386.9595869-UTR-P-littoralis_Contig666:148616..148666Pylaiella littoralis U1_48UTRP-littoralis_Contig666 148617..148666 -
1680791387.0175233-UTR-P-littoralis_Contig666:151743..1518611680791387.0175233-UTR-P-littoralis_Contig666:151743..151861Pylaiella littoralis U1_48UTRP-littoralis_Contig666 151744..151861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791386.9764767-CDS-P-littoralis_Contig666:148666..1490951680791386.9764767-CDS-P-littoralis_Contig666:148666..149095Pylaiella littoralis U1_48CDSP-littoralis_Contig666 148667..149095 -
1680791386.9905648-CDS-P-littoralis_Contig666:150412..1506041680791386.9905648-CDS-P-littoralis_Contig666:150412..150604Pylaiella littoralis U1_48CDSP-littoralis_Contig666 150413..150604 -
1680791387.0043132-CDS-P-littoralis_Contig666:151737..1517431680791387.0043132-CDS-P-littoralis_Contig666:151737..151743Pylaiella littoralis U1_48CDSP-littoralis_Contig666 151738..151743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.56.2prot_P-littoralis_Contig666.56.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 148667..151743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.56.2

>prot_P-littoralis_Contig666.56.2 ID=prot_P-littoralis_Contig666.56.2|Name=mRNA_P-littoralis_Contig666.56.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=209bp
MQESFSAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDARFCIAEV
KVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAARMGFVSRVVG
PAAGAAAPSRQADVVEASLAMASEIAKQSPVAVFGTKRNLVYARDHGVDD
GLEYAATWSGAALQAQDLGTAMRAAAPSSAARKPASEPKKKSRGAGASAG
SRPRFSKL*
back to top

mRNA from alignment at P-littoralis_Contig666:148617..151861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.56.2 ID=mRNA_P-littoralis_Contig666.56.2|Name=mRNA_P-littoralis_Contig666.56.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3245bp|location=Sequence derived from alignment at P-littoralis_Contig666:148617..151861- (Pylaiella littoralis U1_48)
AGGCGACCACTTTTCGGCGGGACTGGACCTGGCTGACACAACAAACTTCG
AAGCCATCGGGAAGGCGACCCCAGACGTTGCTCGAAGAGCGTTTCGTTTC
CGGAGGCTTGCCTTAGCGATGCAGGTACAGCGTTTCGCCTTGCCTTCTTG
GCTCGGCGTAAGGTTGGCGAAGAGGTGCATGATGTGTTGCGTACAATGTG
GATGGAAAGCGAGGGCTCGTCAAGGGGTGCTCCGGAAAGCAGACCCTCTG
CGCCCCCAACCACCATCGTGCCGGTAACGATTGTACGTGGTTGTGCGCTC
AGAAGACCCTTTCACAGATAACTACCACAACTATATAGATGATATGGCGC
AGAGGTGTCCGCCTGTAGAACGGCGTGATTCTATCATTTTTTATTTAACA
ACAATAACAACAACACGCATTGGCCGAGAAGAAACGACTGCTGGACTACG
TACGTGTGGGTATGCCGTTTGCACGTTTGCACGCCTTCGAGGGGCGGTCC
GACCGAAGCAAGCGACTAAACCGAGACAGTCAGTGTCGCCTCCTGTGAGC
GGAAGCGGGACGCTCATCCTCATCGCGCAGCGTACACCTGCCCATCGACA
GAAAACGTTCCAGGTTCCTCCGTGACTCTGGCCAGGGTATTACACAAGGC
AGCCACAAACAATACAGACACACCCCTTGATGGCTGTCTGCAGAGGACGT
CAACAGAAAAATTTGGTCCTTTCGGAGCTGTCGTCGCCTCTTGACGAGCA
AATAATTTTTTGCGAGGTGCCGAATTCCGCCAAATGAAAAAGTGATCAGC
CCTTCGGGATTACAGCTCCCCCTCCTTCATCGGCCTTTTCCGAACACATC
CCGCGGCGATCCCTTCGCGCTTCTGGGTGCGACGTGGCTGCCGTTCTGCT
TGGAGCTGAACCCCGACCCCGCCCCGCCCTGTATTTTTTCTGAGAGGATG
AGGGCGCTGTCATTCGTGTGCTACATACATACAGGTATCAAACCCTTTTT
TTTAGGGCCACTGCGACTGCGGATGATTACTTGCACATTAAGGATGCCCA
TTCGAACCCAAAATACAGGATCTGTCGCACCCCCCCCATCCCTCGGTTCG
GCTAGGAGGGTGTGCGAGTAACGATAAACTGGCCCGAGGCAGGCGACTAC
ATTCAAAGTGGACCTCTCTGGCCCCCGTCTGATCCCCAGTACACCCCCCC
CTTCCACGGGTTGTCTCTAACCCCCTGTCCTATCGGAATTGCGACACAAA
CACGCAGGAGTCTTTCTCCGCCGTGGAACGGTGCCCCCAGCCCGTCATTG
CGGCGATCCACGGGGCGTGCGTCGGAGGAGCCGTGGATTTGGCGTGCGCG
TGCGACATCAGGCTGTGCTCGGAGGACGCTAGGTTCTGCATTGCCGAGGT
CAAGGTTGGCTTGGCGGCGGACGTCGGGACGTTGCAAAGAATGCCTAAGG
TGCGAAGAAATAGTAGCAACCGCAAATGTAACAATAATAGGATGCGCGTT
GCAGGGAATGCTCCCCGGATGATTTCGTTGCGTTGGTCCATTGATTTTTC
ATGGATTTTGATGATCGAGCTGGGGCACGATTCACACGGTTGCAGCGCGT
CGAATGAGGAGCGCACCCTTTTTTTGGGTACACTGATTCCAGGGCCTCGG
GTGTGGTCTTGTTCTTGATATTTGACGTGAATAGGAGCAAAGGAAAAAGT
GCCCCCAAGTTGGTGTTGATGCGATTGGTTGCACGCGCACAGGCAGTGAA
ACGTGACCGAAACAACGCCCCTCGATTAATGAGTTTCTTGGTGGTTGTTA
AGATTATACCCCCCATGTACATGCACGCGCTCTTTTGGAGGCGCGGAGCT
TATTCGGCTTAATCGCCTGGCGACGCAAAAGGTACACATACACACCTCTA
CTTGAGTCATCTATCTCTAACCATGACACGCGGCACCTGTTGAACGGTTT
GCGTTCGACCGTTTTTGCGCACGGTTGACCTCCCCTAGCGGTGTGTCACT
ATTTTTCTCTAGCATGTGTGGTTTTAACTGCGAGGGAAAAACTGGCGCTT
CGATGAAACGGTGCTCAACCACTGGCTCAGCCGGCCGGCTTTTGATTCCG
GGCTCGAATCGGAATTTTCCAAGCTGCGGACGGTTTGTTTGGCGAATCAA
ATGCCGATTTGGTTGAGCGATGCCACTGAAGTCCCCGTTGTTTCGTCATT
TTCACACAGAAATGTTGATGGAGAATCCACTCCAAGTGACGTGGATGGCT
GCTTGCTTTTATGGTCCGAGCAGGGGGAGGGTTGGACAAACTTGGAAGAC
CCAATCCCGGATGACCGTCGGTTTTTATTGTTCCTAGTTTGGTGGGGGGG
CGTGCGCATTATATGCGTGAGCGGTTGGCTGGACATGATTTCACGGAGCG
AATAGAGGGTGGCCTGGGAGTCCTTTTTGTTCAAGCTATGCCTCGATCGC
TCGCTACTTTATCAGAGTCGGGGAGTGTAGATCGTCGTCGCTTGCTTCCG
TACACCCATTTAAGCCCACCGCTGCATCGTCGATCAGTCGTTCAACTTGC
GCCTAGGGTTGTTCGCGTAGCTCTCCCCTCAACTCTATTGCCACCACCGG
CAGCAACAACTTGCGCCTGACATATTGATCGCGTATCATGTGTAGCTCTC
AACACCAGTGTCAGTCACTACCACCACCAACAGCTACCGCAACCGCAACC
GCAACCGCAAAACCAACGACAATTTCACGAACATCATCCTGCCCAAATTT
TCACCAACCACCACAGATAGTCGGCAACGAGTCGCTGTGCAGAGAGCTCG
CCTACACCGGGCGAACGTTCGGAGCGGCCGAGGCCGCACGCATGGGGTTC
GTCTCGCGCGTCGTCGGACCCGCCGCGGGAGCAGCAGCCCCCTCCCGGCA
GGCGGACGTCGTCGAGGCCTCGCTCGCCATGGCCTCAGAGATCGCGAAGC
AAAGCCCCGTCGCCGTCTTCGGTACCAAGCGGAACCTCGTCTACGCCAGG
GACCACGGCGTGGACGACGGGCTGGAGTACGCGGCGACGTGGAGCGGGGC
GGCGCTGCAGGCCCAAGACTTGGGGACGGCCATGCGCGCGGCGGCTCCGA
GTTCAGCGGCGCGAAAGCCCGCGTCGGAGCCGAAGAAAAAGAGCAGAGGG
GCGGGAGCGTCGGCGGGTTCGCGCCCCCGGTTTTCGAAATTGTAGACAAC
TGGGAGAGAGGTGACAAGACAGTAGTAAACTATAAATTATGGTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig666:148617..151861-

>mRNA_P-littoralis_Contig666.56.2 ID=mRNA_P-littoralis_Contig666.56.2|Name=mRNA_P-littoralis_Contig666.56.2|organism=Pylaiella littoralis U1_48|type=CDS|length=627bp|location=Sequence derived from alignment at P-littoralis_Contig666:148617..151861- (Pylaiella littoralis U1_48)
ATGCAGGAGTCTTTCTCCGCCGTGGAACGGTGCCCCCAGCCCGTCATTGC
GGCGATCCACGGGGCGTGCGTCGGAGGAGCCGTGGATTTGGCGTGCGCGT
GCGACATCAGGCTGTGCTCGGAGGACGCTAGGTTCTGCATTGCCGAGGTC
AAGGTTGGCTTGGCGGCGGACGTCGGGACGTTGCAAAGAATGCCTAAGAT
AGTCGGCAACGAGTCGCTGTGCAGAGAGCTCGCCTACACCGGGCGAACGT
TCGGAGCGGCCGAGGCCGCACGCATGGGGTTCGTCTCGCGCGTCGTCGGA
CCCGCCGCGGGAGCAGCAGCCCCCTCCCGGCAGGCGGACGTCGTCGAGGC
CTCGCTCGCCATGGCCTCAGAGATCGCGAAGCAAAGCCCCGTCGCCGTCT
TCGGTACCAAGCGGAACCTCGTCTACGCCAGGGACCACGGCGTGGACGAC
GGGCTGGAGTACGCGGCGACGTGGAGCGGGGCGGCGCTGCAGGCCCAAGA
CTTGGGGACGGCCATGCGCGCGGCGGCTCCGAGTTCAGCGGCGCGAAAGC
CCGCGTCGGAGCCGAAGAAAAAGAGCAGAGGGGCGGGAGCGTCGGCGGGT
TCGCGCCCCCGGTTTTCGAAATTGTAG
back to top