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Homology
BLAST of mRNA_P-littoralis_Contig666.31.1 vs. uniprot
Match: D8LBS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS2_ECTSI) HSP 1 Score: 204 bits (520), Expect = 8.910e-57 Identity = 200/515 (38.83%), Postives = 229/515 (44.47%), Query Frame = 1
Query: 1 NKARRSKWAALAIEVGNSRGLCTLAEAAQRFCGEPASVASTSTSTANGEAGEVETEETAAEAARGECAGSPREALNSSAPRRSSSSGQGVGTAAGKAAGLFASGCKAGEAGAHPMQKTNGAVLEGLAWSLVGRGSSEGAAAMARAERVLENMLHDE-RSPSVAVAAAGGGLKQSASVGNLPPSVQASEAVGLTVPAGSEDRSQLQTLQLGVLCSQGSVVRGGLGMGAGFCTGTAAKGLVPEKGAAAAAXXXXXXXXXXXXXXXVRAANAGLAEAGSLAKKQLAYAAQASCYYLQLSLGHAHAGAI--DLMTGKPAEAEARFKRQLEEARKAGDVILEALAERNLADTREVDDDLKGALVHLRRCRSLAGRGRNAALEADVCRRLSSVYAEIAAXXXXXXXXXXXXXXXXXXXDXGIGQEGGTAQQAREGGEESPETEKEDGADLSEDLSDTVVPETEVLLNEE-----------LEDNDFEFLKATAGDRARLFAERYETAVFGLEWPVYGGGAG 1503
+KA+RSKW ALA+EV NSRGLC LAEAAQRF GE AAAM RAER LE L E R PSVA AAA + +++V ++ +A EAVG++VPAGSE+ Q+ LQLGVL +QG V RGGLGMGA F T XXXXXXXXXXXXXXX DLMTG+P +A RF+ QL+EA+ AGD ILEALAERNLADTREVD+DL GAL HLRRCR+LA R RN+ALEAD CRRLSSVYAEIA GQ G E+E G D + E ++ ED+D EFLK+TA DRARLFAERYETAVFGLEWPV G G
Sbjct: 13 DKAKRSKWTALAMEVANSRGLCLLAEAAQRFSGE--------------------------------------------------------------------------------------------------------AAAMKRAERGLEKFLDREHRRPSVAAAAASVAKRSASTVDDVSLLARAPEAVGVSVPAGSENSDQITALQLGVLGNQGLVARGGLGMGAAFSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLMTGRPVQAAERFELQLKEAQNAGDPILEALAERNLADTREVDEDLPGALAHLRRCRALAQRSRNSALEADACRRLSSVYAEIA------------------------GQSGXXXXXXXXXXXXXXSPEREKGGDHGDGXXXXXXXTQERNRSDSGXXXXXXXXXXREDSDVEFLKSTAADRARLFAERYETAVFGLEWPVSSGNGG 399
BLAST of mRNA_P-littoralis_Contig666.31.1 vs. uniprot
Match: A0A6H5KC12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC12_9PHAE) HSP 1 Score: 185 bits (469), Expect = 5.460e-51 Identity = 145/300 (48.33%), Postives = 169/300 (56.33%), Query Frame = 1
Query: 37 IEVGNSRGLCTLAEAAQRFCGEPASVASTSTSTANGEAGEVETEETAAEAARGECAGSPREALNSSAPRRSSS---SGQGVGTAAGKAAGLFASGCKAGEAGAHPMQKTNGAVLEGLAWSLVGRGSSEGA-------------------AAMARAERVLENMLHDE-RSPSVAVAAAGGGLKQSASVGNLPPSVQASEAVGLTVPAGSEDRSQLQTLQLGVLCSQGSVVRGGLGMGAGFCTGTAAKGLVPEKG-AAAAAXXXXXXXXXXXXXXXVRAANAGLAEAGSLAKKQLAYAAQAS 864
+EV NSRGLC LAEAAQRF GE A+T + GE AGS + + RR SS Q TAA KAAGL A+GCKAG+ GAHP QK NGA+LEGLAWSL G+GS+EGA AAM RAER LE L E R PSVA +AAG + ++S ++P S +A EAVG++VPAGSE+ Q+ LQLGVL +QG V RGG GMGA F T A G V K AA +AANAG AEAGSLAKKQL YA +AS
Sbjct: 1 MEVANSRGLCLLAEAAQRFSGESRE-ATTGREDNKPSSDXXXXXXXXVGTTPGERAGSVSQTAPEAGGRRRSSMTQDEQATRTAAEKAAGLIAAGCKAGDLGAHPTQKMNGAMLEGLAWSLAGQGSAEGASLLFRGFVVGRRGEIGERAAAMKRAERGLEKFLDSEHRRPSVAASAAGVAKRSASSADDVPLSARAQEAVGVSVPAGSENSDQITALQLGVLGTQGLVARGGFGMGAAFSTSAVAMGSVSAKARAAVVGDAAGALAVVAAARTAAKAANAGWAEAGSLAKKQLTYATKAS 299
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 1503 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_002910.1 |
| Cds size | 1503 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791386.051949-CDS-P-littoralis_Contig666:88737..88865 | 1680791386.051949-CDS-P-littoralis_Contig666:88737..88865 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig666 88738..88865 - |
| 1680791386.0657132-CDS-P-littoralis_Contig666:89000..89394 | 1680791386.0657132-CDS-P-littoralis_Contig666:89000..89394 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig666 89001..89394 - |
| 1680791386.07785-CDS-P-littoralis_Contig666:90412..90518 | 1680791386.07785-CDS-P-littoralis_Contig666:90412..90518 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig666 90413..90518 - |
| 1680791386.0948038-CDS-P-littoralis_Contig666:90948..91208 | 1680791386.0948038-CDS-P-littoralis_Contig666:90948..91208 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig666 90949..91208 - |
| 1680791386.1074066-CDS-P-littoralis_Contig666:91672..91873 | 1680791386.1074066-CDS-P-littoralis_Contig666:91672..91873 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig666 91673..91873 - |
| 1680791386.1190379-CDS-P-littoralis_Contig666:92689..92969 | 1680791386.1190379-CDS-P-littoralis_Contig666:92689..92969 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig666 92690..92969 - |
| 1680791386.131024-CDS-P-littoralis_Contig666:93023..93157 | 1680791386.131024-CDS-P-littoralis_Contig666:93023..93157 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig666 93024..93157 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig666.31.1 >prot_P-littoralis_Contig666.31.1 ID=prot_P-littoralis_Contig666.31.1|Name=mRNA_P-littoralis_Contig666.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=501bp
NKARRSKWAALAIEVGNSRGLCTLAEAAQRFCGEPASVASTSTSTANGEA
GEVETEETAAEAARGECAGSPREALNSSAPRRSSSSGQGVGTAAGKAAGL
FASGCKAGEAGAHPMQKTNGAVLEGLAWSLVGRGSSEGAAAMARAERVLE
NMLHDERSPSVAVAAAGGGLKQSASVGNLPPSVQASEAVGLTVPAGSEDR
SQLQTLQLGVLCSQGSVVRGGLGMGAGFCTGTAAKGLVPEKGAAAAAGAA
GALAAVAGARNAVRAANAGLAEAGSLAKKQLAYAAQASCYYLQLSLGHAH
AGAIDLMTGKPAEAEARFKRQLEEARKAGDVILEALAERNLADTREVDDD
LKGALVHLRRCRSLAGRGRNAALEADVCRRLSSVYAEIAAAAVAAAGSPP
SSDGGGGGGDGGIGQEGGTAQQAREGGEESPETEKEDGADLSEDLSDTVV
PETEVLLNEELEDNDFEFLKATAGDRARLFAERYETAVFGLEWPVYGGGA
G back to topmRNA from alignment at P-littoralis_Contig666:88738..93157- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig666.31.1 ID=mRNA_P-littoralis_Contig666.31.1|Name=mRNA_P-littoralis_Contig666.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4420bp|location=Sequence derived from alignment at P-littoralis_Contig666:88738..93157- (Pylaiella littoralis U1_48)
AACAAGGCCAGGCGGTCAAAGTGGGCCGCGCTCGCTATCGAAGTGGGCAA
CTCGCGCGGGCTCTGTACTCTCGCAGAAGCGGCGCAAAGGTTTTGCGGTG
AGCCTGCGTCGGTGGCGTCGACGTCGACGTCGACGTCAGGAGGACCGACC
GAGACCGGAAACAGCGGCGCTGTCATCCCTGCCGCGAGAGCTAACGGCGA
AGCGGGAGAAGTCGAAACAGAAGAAACGGCGGCAGAAGCAGCTCGCGGGG
AGTGTGCCGGGAGCCCGAGGGAAGCGCTGAATAGCAGCGCGCCGAGGCGC
AGCAGCAGCAGCGGACAGGGCGTTGGAACCGCGGCGGGGAAGGCGGCTGG
GCTATTTGCGTCCGGGTGCAAGGCGGGAGAGGCTGGAGCACACCCGATGC
AAAAAACGAACGGTGCTGTGCTTGAGGGACTCGCGTGGTCGCTCGTCGGA
CGGGGCAGCTCCGAAGGGGTAAGTTCCGGAGGAGTGGTGGAGTGGGGGTC
CCAAACGAGGGGTTCATCATTCAAGTGTGATGATATTGCGGTCGACGGCA
GTTGTGGTGATAATGCGGTGTAGAGTGAGTCTGGACCCGTGTGCGCAAGC
TGGTGTATCGTTTATCTCCTGATTCATCTTCTGCCCCCTCTCTCGTGTGC
TCCTCCGGACTGATAGTGAACGAGAGGGGAGGGGCGAAGTAGAGCGTGCG
GGCGCTTGCCGCCCGCACGGCTCTACTTCTGCTGTATCCACCAGTCCACG
CTGCTGCACAGGCCCCACTGGTGGTCATACTTGAGTTATCATACGTGTGC
GTCATGCCAATTCAGTTTCTCTCATGCACGCCGCATATCTTACAGAATCC
GACAGCTTGCTGCACCCTTCCAGCAATGTTGGGGGAAAGGGTCTCATCTC
TTGATTCCAGGAAATATGTTTGCGTACCTCATCGTTATCCCGGAACATTG
ATCTGGGATCTGGGAATACTTGGAGGGGTCTACTTGAAAGTGCAAGACCT
GATGAATATCACATACCTGCTCTCGCTGATATCTTTTTCCTGAACGGTGC
AATACCATGACACCAGCATGCTCGGAAAGAACCTCCGTAGCAAGGGATTG
ATAACCCCTATGCCCAATCCAAAGCTGCTCGAAGACGCACGCAAGCCCAC
CTCTTTGGACCAGCACAGCGAGCACCCCCTCCCCCCCCTCTCCCGTCCAC
TTTGCGCCGGTTTTGTTTGGTGGGATCAACAAACCAACGACGTGATTCGT
TCTTGTTCTCGCGATCGGCACTGCGGCGATGCAGGCTGCTGCCATGGCAC
GAGCGGAGAGGGTCTTGGAAAATATGCTCCACGACGAAAGGTCTCCGTCG
GTGGCGGTCGCCGCCGCCGGCGGCGGCCTCAAGCAGTCGGCGAGCGTCGG
CAACCTGCCCCCGTCGGTGCAGGCATCGGAAGCCGTCGGCTTGACCGTTC
CTGCTGGTAGTGAGGACAGGAGCCAGCTTCAAACGGTGATTGGTTGGTAT
GTACCATAAGAAGGAGCAGCACCACATTTTCCGCAGGCGGGATGTGTCAA
ACCTGTGTAAGCCTCGATATGATTGCGCACACAATTCTTAAAAGGCGACA
GATTGAAGAAAACACAGAAAGGATATTTTCTGAGCCGTCGTAAAAATGAT
TTTCTTTTTAAATTATGGAGGGGCTGTATGTGATGTCTCTGTTACCGTAC
ATAGTCTAACGAGAGATTTCTCCGGAGTCGTCGTAGTAAGAAAAAGTAGC
AATATAGAAAGAACGTGGATTAAACTGCAAGCTTCGCAATTCGCGACCCA
CACCTCTGGGCATAACCATCAGTGCTACACACCAACATACCCGTACACTC
TCAGGACAGACATCCTGAAGCACACAGTCTGTACGACGATCACCAAACCT
AGACCACCTTTCCTTTTTCCGACCTTTTTTTACCCTTTTGCCGCCGCAGC
TGCAGCTCGGCGTCCTGTGCAGCCAAGGATCGGTAGTGAGGGGGGGGCTC
GGGATGGGTGCCGGCTTCTGCACCGGCACCGCGGCGAAGGGTCTTGTCCC
GGAGAAGGGTGCCGCGGCAGCGGCGGGAGCAGCAGGAGCGCTCGCTGCGG
TGGCCGGCGCTCGGAATGCAGTCAGGGCGGCGAACGCCGGGTTAGCGGAG
GCCGGATCGCTCGCCAAGAAGCAGTTAGCGTACGCCGCTCAGGCAAGCTG
TTACTACTTGTATATCGGAGCAATTTTGTTTTGTGTTCCGTGAGTGTACG
TAGGAGGGCGCGGGAGGCGGGAGAGGGGGTCAACCGAGGCGCAGGAAGGA
AGAGCAGCCGGGACACTCCCGAGGAATCGGCTAGCTTACACGTGGGCCGT
GCGTGGGGTATTCACGAGACTTCCTCCTCTCACGTGCCGTCAACGATGCC
ACGCTGGTCACTTTATTTCATCTACCATTGTAGAACAAGTAGTATACTTC
TGGACCGCGTGGCAGACACCATTCCCTGCCCGCGTTTTTCCCTCTTCTCG
CTCTCTGTTATTCCGTTTCGCGTACGTGCCGGCCGTATCCATCTCCTACC
TCTACACCCAACTTTTAAACTCATTGATACAGCCACTCGTTTTGTGCGTC
CCCGTGGCTGGCGCGGCAGGCCACGACGGTTTCACCGAGGCAACTATCGC
TGGGTCACGCGCACGCGGGGGCGATCGACCTTATGACGGGGAAGCCGGCG
GAGGCGGAGGCGCGCTTCAAACGCCAGCTCGAAGAGGCGCGAAAGGTCGG
TAGGAGCGTCAGTCAAACATGTCAAAACACGAACGTCTGAAATCTCATTT
AAATATGTACGTGTTCGGGTTATCGTACAAAGTTTTAGCTCACCGGTCTT
GCCGAAAAACACCCCCTAGGCCAGCTGCCCTAGGCGCTACTCTGTTTGAT
GTCCAACAAAACTACCACACCCCCTTTTGTTTTCTGAAACCGACATCCGA
GGGAAAAGTCGGTGGCCAGCTCTTTTTTTGTTTTGTGGAACTCCCGTGTT
CGAAAGGGTGGATCCAGAACGCCCCCGCCTCGCCCCTCCCCGCTTCCCGG
GATACCTGATCAGAAAAATAGGGGGATGGATAGCACCCCACCCGACCGGG
GACATTCCTTCACAACTTCGCGATGCATGTCCATACTCCTCTCTCCTGCC
CTCCTGGCTTTGGATGCATACGTATGCTGCACGGCCGTCCGTTATTGCCC
GCGACAAGCGAGAAGACAAACAAAACATGAGCGATCGGAGTCTTGCGTTT
GTAGGTGATAAAAACTGGGTTCAGGAATCATGGCCAACGGGGAGCGAATG
GTGCAACCTCCAAAATCTGCAAGTGGAAAGTTGTACCCGGCATGAAAAAG
ACCTTTGAGATAAAGATGAAAAAGGCCCTTGCTATCACATGTGGTATGAT
GGGCCTGATGCTATAGCGAAGAACATGGGGAATTTTCAACCCTCACACAC
GCCCAGAAACACATTGAATGATCTCTATGTACGGTGTGCTTTCTCAGACT
TTCGCGCTGCTGGCAGCGGGCGGAAGCCGGAACGGAGAGCAGCAGGGCCC
ACCAAGACTACTGCGATATCCTCACCCCCGACCGCCAACAACAACGAAAA
AATTAAAAAATGGATGAACACGGAAACATTACAGCAGAAAGACTATGTGA
TGTGTAAATGGTGCACATATGCCTGGTGTGCGACCACGGGCTACAGTAGA
TATTGGCGATTAGCAAATGTGGCAATCAACAACTTTTATCAACCTAGACG
CACGTGCGAGCAGGCTGGGGATGTCATTCTCGAGGCCCTCGCGGAGCGCA
ACCTGGCCGATACGAGAGAGGTGGACGACGACCTCAAGGGAGCACTGGTT
CACCTCCGACGCTGCCGCTCTCTGGCCGGGAGGGGACGAAACGCCGCGCT
CGAGGCCGACGTCTGTCGACGCTTATCTTCGGTTTACGCAGAGATCGCCG
CCGCCGCTGTTGCCGCCGCAGGCTCCCCCCCCTCCTCTGATGGTGGCGGC
GGCGGCGGGGATGGCGGGATCGGTCAGGAGGGAGGCACGGCACAGCAGGC
AAGGGAGGGAGGGGAGGAGTCGCCGGAGACCGAGAAGGAGGATGGTGCTG
ATTTGTCGGAAGATCTTTCGGATACTGTGGTCCCAGAGACCGAGGTACTT
TTGAATGGTGCACGCATGTGTGTGTATTATTTCTGTTTTTGCTGGGATAC
GGCTCATTTATTGTCTAGGCCGGCCGTTGGTTCCATTGTTTCTCTCAACC
CTCTCTCCCGCTCGATATCATACGTGCGTACGTTGCAGATAGAGGAGCTA
GAAGACAACGATTTTGAATTTTTGAAGGCAACGGCGGGCGACCGGGCCCG
TCTGTTCGCTGAGCGTTACGAAACGGCCGTGTTCGGGCTGGAATGGCCGG
TTTACGGCGGCGGCGCTGGG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig666:88738..93157- >mRNA_P-littoralis_Contig666.31.1 ID=mRNA_P-littoralis_Contig666.31.1|Name=mRNA_P-littoralis_Contig666.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1503bp|location=Sequence derived from alignment at P-littoralis_Contig666:88738..93157- (Pylaiella littoralis U1_48)
AACAAGGCCAGGCGGTCAAAGTGGGCCGCGCTCGCTATCGAAGTGGGCAA
CTCGCGCGGGCTCTGTACTCTCGCAGAAGCGGCGCAAAGGTTTTGCGGTG
AGCCTGCGTCGGTGGCGTCGACGTCGACGTCGACAGCTAACGGCGAAGCG
GGAGAAGTCGAAACAGAAGAAACGGCGGCAGAAGCAGCTCGCGGGGAGTG
TGCCGGGAGCCCGAGGGAAGCGCTGAATAGCAGCGCGCCGAGGCGCAGCA
GCAGCAGCGGACAGGGCGTTGGAACCGCGGCGGGGAAGGCGGCTGGGCTA
TTTGCGTCCGGGTGCAAGGCGGGAGAGGCTGGAGCACACCCGATGCAAAA
AACGAACGGTGCTGTGCTTGAGGGACTCGCGTGGTCGCTCGTCGGACGGG
GCAGCTCCGAAGGGGCTGCTGCCATGGCACGAGCGGAGAGGGTCTTGGAA
AATATGCTCCACGACGAAAGGTCTCCGTCGGTGGCGGTCGCCGCCGCCGG
CGGCGGCCTCAAGCAGTCGGCGAGCGTCGGCAACCTGCCCCCGTCGGTGC
AGGCATCGGAAGCCGTCGGCTTGACCGTTCCTGCTGGTAGTGAGGACAGG
AGCCAGCTTCAAACGCTGCAGCTCGGCGTCCTGTGCAGCCAAGGATCGGT
AGTGAGGGGGGGGCTCGGGATGGGTGCCGGCTTCTGCACCGGCACCGCGG
CGAAGGGTCTTGTCCCGGAGAAGGGTGCCGCGGCAGCGGCGGGAGCAGCA
GGAGCGCTCGCTGCGGTGGCCGGCGCTCGGAATGCAGTCAGGGCGGCGAA
CGCCGGGTTAGCGGAGGCCGGATCGCTCGCCAAGAAGCAGTTAGCGTACG
CCGCTCAGGCAAGCTGTTACTACTTGCAACTATCGCTGGGTCACGCGCAC
GCGGGGGCGATCGACCTTATGACGGGGAAGCCGGCGGAGGCGGAGGCGCG
CTTCAAACGCCAGCTCGAAGAGGCGCGAAAGGCTGGGGATGTCATTCTCG
AGGCCCTCGCGGAGCGCAACCTGGCCGATACGAGAGAGGTGGACGACGAC
CTCAAGGGAGCACTGGTTCACCTCCGACGCTGCCGCTCTCTGGCCGGGAG
GGGACGAAACGCCGCGCTCGAGGCCGACGTCTGTCGACGCTTATCTTCGG
TTTACGCAGAGATCGCCGCCGCCGCTGTTGCCGCCGCAGGCTCCCCCCCC
TCCTCTGATGGTGGCGGCGGCGGCGGGGATGGCGGGATCGGTCAGGAGGG
AGGCACGGCACAGCAGGCAAGGGAGGGAGGGGAGGAGTCGCCGGAGACCG
AGAAGGAGGATGGTGCTGATTTGTCGGAAGATCTTTCGGATACTGTGGTC
CCAGAGACCGAGGTACTTTTGAATGAGGAGCTAGAAGACAACGATTTTGA
ATTTTTGAAGGCAACGGCGGGCGACCGGGCCCGTCTGTTCGCTGAGCGTT
ACGAAACGGCCGTGTTCGGGCTGGAATGGCCGGTTTACGGCGGCGGCGCT
GGG back to top
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